Click
here to close Hello! We notice that
you are using Internet Explorer, which is not supported by Echinobase
and may cause the site to display incorrectly. We suggest using a
current version of Chrome,
FireFox,
or Safari.
Exceptional population genomic homogeneity in the black brittle star Ophiocomina nigra (Ophiuroidea, Echinodermata) along the Atlantic-Mediterranean coast.
Leiva C
,
Pérez-Sorribes L
,
González-Delgado S
,
Ortiz S
,
Wangensteen OS
,
Pérez-Portela R
.
Abstract
The Atlantic-Mediterranean marine transition is characterised by strong oceanographic barriers and steep environmental gradients that generally result in connectivity breaks between populations from both basins and may lead to local adaptation. Here, we performed a population genomic study of the black brittle star, Ophiocomina nigra, covering most of its distribution range along the Atlantic-Mediterranean region. Interestingly, O. nigra is extremely variable in its coloration, with individuals ranging from black to yellow-orange, and different colour morphs inhabiting different depths and habitats. In this work, we used a fragment of the mitochondrial COI gene and 2,374 genome-wide ddRADseq-derived SNPs to explore: (a) whether the different colour morphs of O. nigra represent different evolutionary units; (b) the disruptive effects of major oceanographic fronts on its population structure; and (c) genomic signals of local adaptation to divergent environments. Our results revealed exceptional population homogeneity, barely affected by oceanographic fronts, with no signals of local adaptation nor genetic differentiation between colour morphs. This remarkable panmixia likely results from a long pelagic larval duration, a large effective population size and recent demographic expansions. Our study unveils an extraordinary phenotypic plasticity in O. nigra, opening further research questions on the ecological and molecular mechanisms underpinning coloration in Ophiuroidea.
Boissin,
Defining reproductively isolated units in a cryptic and syntopic species complex using mitochondrial and nuclear markers: the brooding brittle star, Amphipholis squamata (Ophiuroidea).
2008, Pubmed,
Echinobase
Boissin,
Defining reproductively isolated units in a cryptic and syntopic species complex using mitochondrial and nuclear markers: the brooding brittle star, Amphipholis squamata (Ophiuroidea).
2008,
Pubmed
,
Echinobase
Boissin,
Did vicariance and adaptation drive cryptic speciation and evolution of brooding in Ophioderma longicauda (Echinodermata: Ophiuroidea), a common Atlanto-Mediterranean ophiuroid?
2011,
Pubmed
,
Echinobase
Borrero-Pérez,
Phylogeography of the Atlanto-Mediterranean sea cucumber Holothuria (Holothuria) mammata: the combined effects of historical processes and current oceanographical pattern.
2011,
Pubmed
,
Echinobase
Carreras,
Population genomics of an endemic Mediterranean fish: differentiation by fine scale dispersal and adaptation.
2017,
Pubmed
Catchen,
Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations.
2017,
Pubmed
Catchen,
Stacks: an analysis tool set for population genomics.
2013,
Pubmed
Clement,
TCS: a computer program to estimate gene genealogies.
2000,
Pubmed
El Ayari,
The hidden side of a major marine biogeographic boundary: a wide mosaic hybrid zone at the Atlantic-Mediterranean divide reveals the complex interaction between natural and genetic barriers in mussels.
2019,
Pubmed
Ellegren,
Genome sequencing and population genomics in non-model organisms.
2014,
Pubmed
Excoffier,
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows.
2010,
Pubmed
Foll,
A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective.
2008,
Pubmed
Formenti,
The era of reference genomes in conservation genomics.
2022,
Pubmed
Galaska,
Crossing the Divide: Admixture Across the Antarctic Polar Front Revealed by the Brittle Star Astrotoma agassizii.
2017,
Pubmed
,
Echinobase
Galaska,
Geographic structure in the Southern Ocean circumpolar brittle star Ophionotus victoriae (Ophiuridae) revealed from mtDNA and single-nucleotide polymorphism data.
2017,
Pubmed
,
Echinobase
Garcia-Cisneros,
Low genetic diversity and recent demographic expansion in the red starfish Echinaster sepositus (Retzius 1816).
2016,
Pubmed
,
Echinobase
Garcia-Cisneros,
Intraspecific genetic structure, divergence and high rates of clonality in an amphi-Atlantic starfish.
2018,
Pubmed
,
Echinobase
Jeffries,
Comparing RADseq and microsatellites to infer complex phylogeographic patterns, an empirical perspective in the Crucian carp, Carassius carassius, L.
2016,
Pubmed
Jenkins,
Meta-analysis of northeast Atlantic marine taxa shows contrasting phylogeographic patterns following post-LGM expansions.
2018,
Pubmed
Jombart,
Discriminant analysis of principal components: a new method for the analysis of genetically structured populations.
2010,
Pubmed
Jombart,
adegenet: a R package for the multivariate analysis of genetic markers.
2008,
Pubmed
Kimura,
The Average Number of Generations until Fixation of a Mutant Gene in a Finite Population.
1969,
Pubmed
Kopelman,
Clumpak: a program for identifying clustering modes and packaging population structure inferences across K.
2015,
Pubmed
Lau,
Genomic insights of evolutionary divergence and life history innovations in Antarctic brittle stars.
2023,
Pubmed
,
Echinobase
Leiva,
Population substructure and signals of divergent adaptive selection despite admixture in the sponge Dendrilla antarctica from shallow waters surrounding the Antarctic Peninsula.
2019,
Pubmed
Librado,
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data.
2009,
Pubmed
Liu,
Stairway Plot 2: demographic history inference with folded SNP frequency spectra.
2020,
Pubmed
Meirmans,
genodive version 3.0: Easy-to-use software for the analysis of genetic data of diploids and polyploids.
2020,
Pubmed
Osman,
Globally resolved surface temperatures since the Last Glacial Maximum.
2021,
Pubmed
Pascual,
Impact of life history traits on gene flow: A multispecies systematic review across oceanographic barriers in the Mediterranean Sea.
2017,
Pubmed
Patarnello,
Pillars of Hercules: is the Atlantic-Mediterranean transition a phylogeographical break?
2007,
Pubmed
Peterson,
Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species.
2012,
Pubmed
Posada,
jModelTest: phylogenetic model averaging.
2008,
Pubmed
Pritchard,
Inference of population structure using multilocus genotype data.
2000,
Pubmed
Puritz,
dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms.
2014,
Pubmed
Pérez-Portela,
Genetic homogeneity, lack of larvae recruitment, and clonality in absence of females across western Mediterranean populations of the starfish Coscinasterias tenuispina.
2021,
Pubmed
,
Echinobase
Pérez-Portela,
Cryptic divergence and strong population structure in the colonial invertebrate Pycnoclavella communis (Ascidiacea) inferred from molecular data.
2008,
Pubmed
Pérez-Portela,
Spatio-temporal patterns of genetic variation in Arbacia lixula, a thermophilous sea urchin in expansion in the Mediterranean.
2019,
Pubmed
,
Echinobase
Rambaut,
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7.
2018,
Pubmed
Ramos-Onsins,
Statistical properties of new neutrality tests against population growth.
2002,
Pubmed
Riesgo,
Population structure and connectivity in the Mediterranean sponge Ircinia fasciculata are affected by mass mortalities and hybridization.
2016,
Pubmed
Riesgo,
Genetic diversity, connectivity and gene flow along the distribution of the emblematic Atlanto-Mediterranean sponge Petrosia ficiformis (Haplosclerida, Demospongiae).
2019,
Pubmed
Rogers,
Population growth makes waves in the distribution of pairwise genetic differences.
1992,
Pubmed
Rozas,
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets.
2017,
Pubmed
Saenz-Agudelo,
Population genomic analyses reveal hybridization and marked differences in genetic structure of Scurria limpet sister species with parapatric distributions across the South Eastern Pacific.
2022,
Pubmed
Schroth,
Speciation and phylogeography in the cosmopolitan marine moon jelly, Aurelia sp.
2002,
Pubmed
Siegel,
The stochastic nature of larval connectivity among nearshore marine populations.
2008,
Pubmed
Sponer,
Phylogeographic analysis of the brooding brittle star Amphipholis squamata (Echinodermata) along the coast of New Zealand reveals high cryptic genetic variation and cryptic dispersal potential.
2002,
Pubmed
,
Echinobase
Stöhr,
Global diversity of brittle stars (Echinodermata: Ophiuroidea).
2012,
Pubmed
,
Echinobase
Suchard,
Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10.
2018,
Pubmed
Sundqvist,
Directional genetic differentiation and relative migration.
2016,
Pubmed
Taboada,
Contrasted phylogeographic patterns on mitochondrial DNA of shallow and deep brittle stars across the Atlantic-Mediterranean area.
2016,
Pubmed
,
Echinobase
Tamura,
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.
2013,
Pubmed
Tiffin,
Advances and limits of using population genetics to understand local adaptation.
2014,
Pubmed
Torrado,
Individual-based population genomics reveal different drivers of adaptation in sympatric fish.
2020,
Pubmed
Weber,
Genetic data, reproduction season and reproductive strategy data support the existence of biological species in Ophioderma longicauda.
2014,
Pubmed
,
Echinobase
Weber,
Species delimitation in the presence of strong incomplete lineage sorting and hybridization: Lessons from Ophioderma (Ophiuroidea: Echinodermata).
2019,
Pubmed
,
Echinobase
Yuasa,
Elucidation of the speciation history of three sister species of crown-of-thorns starfish (Acanthaster spp.) based on genomic analysis.
2021,
Pubmed
,
Echinobase