Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041626417.1 PREDICTED: Lytechinus variegatus uncharacterized LOC121429430 (LOC121429430), transcript variant X2, mRNA TTTGTGGGTGGATGAGAAGAAACACTCGTTCTAGATATAACTTCGGGGCAAACTGGGGTGTCATCTTCGT TCTCTTTAGTTTTGACTCCATTTTCAAACAAGTATCAATTCAAGTAAAGAGGATAAAGCAGCTACTAGTA TACAGGCCTGTTACAGAGGATATCTAGGACGTAAACTTTATCTACAACTACTTCTAAATAAATTCAACAA GGATGAGGAGCAGAGGAGGAAACACATGTTAAAGCAAGTCGAGGAAGGAGAATTATTGCTTGAAAATCAC AGATTGGAGGTAGAATTCGAAGACAACAAGTGTGTCAGGAGAAACAGACTACAGAGATATGAGTCAAGGA TAATCACGATCCAACGTGCTTGGAGGAACTATAAACGCAGGAAAGAACATACAAGGAGAGGCACATCAAA AGCAACTTCCTCTGGAAGTGATGATGATGATGACGACAATGACGATGATGATATAGACAACGTTCACAAT GAGGATGTAAATAATGGAGACAATAATATAGATGACAATGATGATGATGAATTTTTATCAAACGACGTAA ACGGTAACCAGCTGTCGGGTGAAAGTGATATACATTCTTCACAAATTGACCAACAGAGGGAGACAAACCA AAGCGTGGAGGGAGAGGGAGATAATCAACATCAGGATTCAACGTCTTCAGGTGGTGAGAGTCAGGCAGAA CCCATTGGCATGACAGCAGTGGGAGGATCCAAGAAAGGGATCGCCATGCTGCATGACCTGGGTAGCAGCG TGGAGCTGGATGACAAAGCCTGCTACGAGACATCACCAGATACACCAAGCCGAAGACGTCAGGGAATCAA CCGCCTAAGTCTCGCGGAGGAGTTAGCAGCTATGGAGGAAAGAATTATGGAGGATTCGGTAGATTTTGAC TCTCAGAACGAGGAGAGCGACTATTATGCAAGCTCTAGTTGTGTGACCTCGCCCGAAGGGGACGGCGGGG ATGGGAACGAACACATCGGCAAGAGACCAGTGGTGTCCCTGTCCAGGAATATAGGAGGGAAACAAACTCC CAGCCCTAGTGAAATGAGGACTACAGAGGGCTCCCCTCACATTGAGTCGTTTGACCAGAATAAAAACACA AACGATTTCAACGCAAACGCTTCTTCCTTCCTGATGGAGGAGACAGAACTCAGCGAGGCTCTTGCAAAAC TCAAGACTAAGTTAGGTACGGCTTACATGGACAACGAGACCCCTTCCTCAACCCTTAATCCCATTTGTGG GGAGCAAAGCATAAATAGAGTAGGGGAAACGACTCCCAGTGAAAGCAATCCAGTGACACATTCAATGACT TCCTCCGTTCTGTGCAGCACCACGACACTGACTCACAGTCCATCTAGCCAAGTGCACAGTTCCACAGACA CAACAAGTGCAACGGTTACGACGAGCGTGACGACTACGACAACATGCAATCGAGGCACGAACACACAGAC TCTGGTCACGAGCACCGCCACCACTGCACCTTGTTCGAACTCTGACCCCTCCCTCATTGGGAAGAGGTTG ATAAGGGAAGGTGGGGCGCCCCCTAGAGGTGGGGTATGTAAGAGTTTATCTGGCATAGAGACAGCCTTGC CTGTGTTAGATTGGGATTCTCTGGAGAAACACCTTGCTAAAATGGAAAGGGAAGAAGAACAGCAACAGAG TGCTAAACAGTCCCAGAAGAACTCTCGTCAGGAGATCCTCCGCAAGCTTGCCATGGGCGCCGACGAGGAG GCAGAGGGCGACATTTACGGCAAGGGACGGGATAAGCTCTCCGCGCGTCTCCAGGGCGGCATGAACCTCC AGATATGCTTCGTCAATGAGAACCTGGACTCTGATGATGATGAAGGGTCGAAGGTCGTTGCCATGCCATC TAGCAGCACTATTCCTGGTCCTATCGTAGGCAATAGGGACAGTCGTTACCTCTTCAGTCGGGAATGCAGT GCAAGTAGTACCAGCAGTGCAGCTTCACCAAAGGCTCCATCAGTAACCTTTGAAGATATTGAAGATTTTG AATCCAAGAAAGCACAACTCCAGGAAGAGGCAAGGATAGCCTGGGCCAAGGCAGAACCACTGGCTAAACT ACAGATGGAACTAGAGAGGCAACAGAGAAAGACCTCACCTTCATCAGACTTGTGTCATTTATCAGGTCTA GGTGATCTACCGATCAGTCTTCTTGGCAAGCGGTTCCAGTATAAAACCTTGAGTAGAATGTCCGTCAGCA AACTCCAAATCATCCTCAATGATCTTCACTCACAAGTTGAAAGACTAAATGAGGAGCTGGTGCAGTGTCT GCTGGCGAGGGACTCCTACAAGAGGGAACAGGAGTCAAGACTCATAGACATAGAGGACCTGAACAGGTGG ATTAGAATGAACTTACAGCAGAACAACAACAGCACGCTCATCAGCAAAGAGTCTCTCGGGGACGATGGCC GTAAACAGCGCCACCAGTACGAGGCTCTTCTACGTCTCCTAGGCAACACGCTGCCCGCATCGGGCAAGAA GTGCTTCTGCGGGGTGAGCCGTAGCTCGTCCGTGGTGTCCAACCGATCCGCTTCCAGTCCCGAGCCGGAT TCCATCGGGGGTATCAGACCAGCCCCCTTGAGCCCCATCAGCCCGGGGAGCTGCCGGTCCGAGTCAGCTG TTAACAGCCTTACAGAGAGCCATGCCTCCAGCCCCGAAATGACATGGGTTCGACAGGCCATTGTACGCTA CTGGCATAATTGACCACACATATATCTCTCCCTCTTGACCTTTACCACACCCTTGCACCTGTCTACCATC CCAATGCACCCCTCTACCATACCAATACACCCCTCTACCATACCAATGCACCCCTCTACCATACCAATAC ACCCCTCTACCATACCAATACACCCTTCTACCACTTGTGATCTACACCCCTACAACTCCACAAACTCAAG TTGCTGTTTGACTTCAAGGGACTCAAATCAACATTGTTTTTTGAGATCCCAAGGTTTTTGTGATATCATC TGAGAAATAAAATGATTGAAAGTTTCTTCTTTTTTCAACTTTCAATTTGTGTAATTTTGAAGTAGTATTT TCTAAAACTATGACACATCTGCAGGTGCTGATCCAGTCAAATTAGACATAATAGTTTAGAGGGGGCCAAA TATTGTGCACCACAAGTAATACTGGCTCTGAAAAAGGTATTATGTCCAACCTGGTTGGATCTGCTACTGG ATGAGTGAAAAGAAGTAACATTATTTCCATAGATAAATGCTCTAATTCACCAGTATTAATAGGATCTTGA TGTATTAATGTCATTGGTAGTAATATGCTTGAAATCAAATAAGAGGGAGAGATACATGTTCTTATAATAT AGTTGAAATAAATTCTTCATTCTTTGTCCATTACATTTCAATCATACAAATTAACCACATGCTTTTAAAG AATACAATCTCTATATTCATAAGAAATGCATATATTTGTATAAAAAAGGTATTTATTACATAATGTATAG CAGTAAGAATACAAAATGCACATCTTTTCAATCATGGGTTTGATAAAATGATATTGATCTAATCATCGAG TTTTGATGTGTTTTGATGTGAATTCAATGCTGCATGAGAAACTGTCTATTATCTAGTGACCACTTGCTTT ATACATCACTGCTCTTTTGCTAGAAAGTAGTAGACAAACTTTAAATGTTCAATCTGCTGTAAGAAACTGG TAACAATACACTTGACAAGTATAAATAAAAGTAACTTTGTCTAATAGAAGCAACTTCTTTTCGTTTTATC AGCATCACACACTCAAATTATCATTTTTACATCATTGTTTTGCTTGCTAGAAACTCATCCAGAATTTCAT AAATTGAATTTGCTGTAGGAAATGAACTGGTGGTTTTGACCTGGCAAGTTACAATTATTCTTTGGGATGG TTTCATCAGCATGAGGCTTTTCATAAAGTTACACATAATTTTAGGAACAACTGAAATACTGCAAGCTAAA TGAGTTCTAAATCATTTTTAATCATATTTAAAGCTTAAATATGATTAAAATTCTTCTTGAAATCATTCTT AATGCAAGCTGTATTTTCCACCATAACTTGAATAGTCAATTATAAGAAATACAGTAAAAATTACTTGAAT TGTCAATATATATATATTTTGCATCACATTTGGCACTCCATACTCCAGTCATTTTTAAGTTATCTGTAAC TTTGTAAAACTCTTTAGGAAATACCCCCTTGCTTCTAGGATCCAAGAGGTTGAAAGAATGATTAGC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
