Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041624806.1 PREDICTED: Lytechinus variegatus protein ELYS-like (LOC121428198), transcript variant X3, mRNA CTTGTTCGGCAGCACGCTCGCTCGCGGGAACTTAGTAAATTAGAAGAATTGTAAAAATCATTTTAACCAA ATGTACTCGCTGATGACTGTACAAGATGGATAACTGCATCATCGATCCTCACAGTATTGCTGCTCCAATA GGAATAGTCTCATCAGAGTTGACTTCCTTCTCAAATAAGACAGGAGGTGTCAATATATTTGGAGGTTTCA GTAAAGATGGTAAAAGGGGATGGGTGGCCACTGACAGCTTCTTGGACGTGATCTGCACCAGGTCTGGCAA CCGACTGGCTTCTTTCAACTTCAGCCAGGTGGCGGGGTCCTCGGCAACGATCACCTGCGTCAGAGACTAC CCCTATCATAGATCGTACCAGCTCCTGGTCGGGCTTCAGACCGCATCCAAGAAGGGTATGGTGTGTCGTT TCAGGCCACACTCATCAAAACTCCTCACCGTCGTCAACTTTCCACATGTGGTGACCGCTATTGACTGTGT GACATCTGTTGGTGGCGTAGAATCCCCAAACTTTGCCCTCAGTGATGAACTCCGACGTTTCTTTGGCATC ATTGCCGTGGGAACCAAGGGTGGACATGTGTACATGCTGGACATGAAGCTGGATGAAGACGTTGAATTCT GGGATATGACGCAAGGACGCCCGGCTCAGATCATAGCCCCAGGAATCCCGGACATTGATCAGAGACGCCT GAAGGCTGCTGCGAAGGGAGAACATCTTTGCCTTGATCTAAATAATGCAAGTCCTGCAAGTTTAACTGGC GATGCCTTCAGCTATTACTCCTTCAATTACTGCAAACCCGATGGTAAAATCTTCAAGACATTCCCCATCA GTGATGTCTCGGTGACCTCACTGACCTACATCCCTCAAATCGGCTCACTCGCCGTCGGGTTCAACTTTGG ATCTTTCCAGCTATGGAGATTGGCCGACACTTCTCTAGAGTATAGCGGTCCTTTGAGCCGTCACCCTTCA CCTGTCACTCACTTCGCCTACCAGGAACCGGAGGATGATCCTCAGAACTTCTGCTACCTCTGGGTCGCAA GGGGTCCTGTGATCTCAGATTCAAAGGATGACCAGGAGACTCTAACAGACATTCATCTATTCCAGCTCGC CTATGAGAAGAAAATACAACACCCCAAACACGGACATATGTTCAAGGATCTTGTTGACTGCATCGGTAGG TTTGAGCACTACTTGACCGCTAACCCCCTGGACAGCAATGACGTGGTCTCTCTGGGCAGTCGTCTACTTG CCTGCTATACCCTGGACAGGGCGTTGCCTACAGGATATAAGATACATGATGACTCCACCGCAGAGGAAGA GGTGAACCCAAAGGATCTGAGTCTAGCAGTATTTGTCTGGGAAGGTTGCCCTGCCAATATGGAAACTCAA GAAACCACAAACCATTTCATTGCCCTCTTTGATCTTGACCGTTATTACCAGGCTCAGATGCCCTCATTCA TCAAGTGTGATGAGCTCACCGAGCCCCCTCCTTACTTCTCCTTCTACAACCTGGAAGCAGTGATAGATGC AGCATCTCCAGATTTTGCTCTGAATGTTCACCTGGATAAGAGCAGTTTAACCAAGTATCAATCAACTTGC CAGTCGGTACCTGAACCACACCTTCACCCCTCATCCCTTAGCTTCAATGTGGTCTGCCTCGCTGAAGGGA GCCTCGTCCACGCAGGCTTCCTGGGAATACAAAGAAAGATTTTGGCTGATATGTGTAACCAGGGCCCCAC CCTCCTCCGGGAGCCACGCCCATTTTACCTGCGATGCTGGAATGCCCACCTCATCCCCAGGCGAAGCTTT GCTGAACAGATACCTAGCGGTATTAATCAGGTACAACAAAGAGAAGATCTTCTCACCCTGGCCCTGGAAC ACAATCAGCTAGGATTCCTGGTTGCCTGTATATCAAGTTGGAGTCAAGGAGATTTTACATCTGGAATGAA CCTCCGTTCGATTTTGGAATGGTCGTGGGGTAAAGTGGCGAGCATCAAACAGACTGTGGATGAAATATGT GTGCCGCTGTATGATGGCTATGGGACGACGTTAGACTCCCATTCTTACAAACTACTCAAGACCTGTTCTA CTCAGCTGTGTCACATGATAGATCTCTTCCAAGCTTTACTCGACCAATCAGGAACCACCACAGATCAAGG TGTGAAGGATTTGGAGACCAAGTTGGGCGTGGTCACTCTACTCTCCCAACACCTCCAGATGGTGCTTTGG TTCAGTCATAGTGGCCTACTACCAGAATGTGGAGATGACCTTGGATCACCTCTTCATGGCCAGTTCTGCT ACCCATCCTCCCTCCTGCATCAGACATATGCCCAGCGAAGAGCAGAGCTTTCCAGAATGTGCAGGAATAG CGGAAACAGTGACATCATGCTGATTGATGGTCTGGTGTCCGAGGCGGGGCCAGCTCTCACCTCTCTTTGG GATCGGAAGGATCAAGGGGGTACAGGAGCGTACCCCCCTCCAAGTCTTCATGCACTTCTTGACATGTTCC TTTTGGAGAATGTTCCCTTGGCAACCAAGCATTGCATTGTGGGATATCTTCTCCTCGATATCATATCAGT CAGCCATGATGCCAAACATTCTGAGATGGTTGAGGATATTGAGAAGTTCCATCAAGTGTTCAGCCTCCCT CTGGGTCTGACAAAGCTGCTCCAAGCATTCTGGCTTCTTGATCACAGAGATTATGAGGAGGCTCTTGCCA TGCTGCTTGACCCCAACACAAACAATGATCTGTTGTCATGGCAACACACTCGCATTATCAAGACCTTCCT GTACCACGGCCAGGCTAAGATGGCGCTGCATTACGTGCGGTGTGTTCGGCCCGCCCTTGACACCCCAGAC GATATCAAACTCCATCTTACGGTGCTCCTGGCAAACGGGTTAACCGCTGAAGCGTTTCAGTTCCAACGAG AGTACCGAGACCCGTCAACCATGGATGAACTTCTGTATCACATCTTCCTCGGCTCCCAACAAACCAAGAC AATGGACCAGCTACTCCGCCTCCCCTTTGATGACATCGAAGAGTCTGTCCTTGAGCGCTATCTCCTGGAG ACGACAGAACCCAACTCCAAGGAGCTTCTCGTGATGCACTACCTCCAAAGGACCAGGTTTGTGGATGCGG TCCGACTGAATGAAACCCTCAAACAACAAGCTCTTATGGGTGATAATGACCCCTTAGCCAGGGAGAGGAC CTCGGCAAGAAACATCATCACAGAGAGCTATGTCAATGTGCTACCGAGGGTTCAGAGACGACTAGCCTTT GACTCCGACTCCAGACAGAAGAAACCAGTCGGAATAAGGAGAGAAGTTCCGCGTCCCAAGCCCCTGTCGA CCATCATCAACCCTGCCAAGACTTCCAAGGTCATTTCTCATGCCCTGCTTCTCAATGCAGTCCTTGATAG GATCGCAGAGGCTAGGGATGTCATGAAAGCTGATCAAACACCTACTAAACTACAGGATGAGTCTTATGAC AGCTCACCGTGTATTGAACCCTTCGTTGGTACACCGATGACCCCTCGCAACAGAACAGCTAGGAGTGCTG ACGTGAGCGTTGTCTATCCCGAAACCCTTGAAGCAGAGGACTCTGCCACGTATCATCCATTTTCAACCAG TCTTAATGCGAGCATTAACCAATCGTTGAGGGGACTTGGAGGCATGGAGACACCAAAGGTTCTCAAGGAG TCCTTCAAAAGACCTCCTTTAGATTATTCAGGAGCAGAAGCCTTGGCACTCCTACAGACACCTCCAGTGA AAAGGAGAACACCAGCAGTCCATCAAGAGCCCCAGGTCGCCCCACCCACACCCCAGTCTATTCTCAAAGT CAGAAAGGTCATCAGAAGGTCACCTAGTCCTCCAAAAGTCGTCACAGAAAGAGCGAGGGGATTCGCAGCT GTAGACATTACGCTACCCACGCCACCTCAATTCCATCGCAAAACGCTTTCATTTGCGGAGGAGGATTCTG AGAAGACCAAAGAAGCGACGCCGGCCAGGCACATCCGCTTTTCAGACGACACAATCTTGCAGGACTCGCC ATCTCCTGACATCAATGAATTGGTGCCAGAACCCCCGTCATTTATCCCCGGGCGGAACACACCCTCACCG AATGTTGAGCAGCAGGCATGGGCCACCCCGCCTCTCAGCCCCCAGATCTCCCCTACCAAGGAGGCAGCCG AGACCCCACCCTTCCAGTCTCCCATGGAAGGCATACCACCAGAGCAAGCCCGGGACTCGTCCGTCAGCCC CACCCGTGGCTCACCGCCCAGTCCGACTCGAATGGAAGAGCAGGTGGTGGAGGGGGCAGGGCATCTTATA TTAACCCCGAAGATGAAGCCGCCGACACCTCAACACAGTCGTATCATTACCCCGAAAGAAAAGCCACCTA GTGTTAGACGTCCCTCTCCTCTCCGCCAGCCATCAGAAGAGAACGAACAAGTACTGCAGTCCTTGTACCA AGATGACGACTCCCAGACCCCGCCCATTCCAGAAGGGATGGTACTGAATCTGGATAATGTCCTTCACCAT GGCGACCAGACTGGACAGGAGGAGGACGGGGAAGAGGATGAAGAAATCACTTTCAATTTCAGTCTGAGGC ATCCGGGAACTCCCGCTTCGGCTGAGGCACCGCAGGAGAGGGAGGAGCCTGTTCCCATGGCGATGGAGGA TGTGGAAATGGATGCGGATGAGCAGATGGATACTGAAGGACCTACCGCACAACGGGAACCTTCACCCGCG AAGCCTCCTGAATTCATCTTCCAGCCGTCACCGCGGAGACCCATCCACTCCCTGGCCCCATTCCAGTTCC AGGAGAGCACTACCCGAAGCCCCTCGTCAGTTCCCCTTCCAACACCCCCGAGGGAGTCGAGAGACTTTGA CGTGGAGCAGGCCTTCTTGGACAAGGGTCCCCCTGTATCGGAAGATTGGCAGCTGACCTTTGATGCGGAA GACACAGAAGATGAGGATGAGGTGGCCGTTGCAGAGGGAGAGCCGAAGGTGCGGTTCGGAGAGAAAGAAG TCTTCGAGATTCCTGCAGTCCCTAAACACGTCCGGGAGAGCGTGCACATCCAGACCTCGCCAATGTCCGG AGCAACCTTTGACCTCTCCCAGCAGCCAATCGGGAAAGCCGACGTCCAGGAGATGTCTGTGCAGACCACT CCGGGTCTTGCGCTCAGGACTCGGGAAGTGGAGAAGACGCCCCCTAGAGTTCCGTTCAGTGAAACTCTGA AGGACAGAGAAGGGACGCAACGTCAGGAGGATCAGGAAGTAACGGAGGGCCCTAGAGATTCTGGCAAGCT GGATTCTCCCATGGATGTTCAAGCAGATATACCGGTAATATCACCTCCTAAGCCTCCCAGTCTGACGATA CCAAGACAGGAAGACGTGAAGGAATCCCCTAGAAGATCTCCAGTTACCAGATCCATGACCACACCATCAA GATCCAGTCCAAGAACCCAAATGAGACAGGAACAACAGAAAGAAGAGCCAACCACACCTGCCCAGCCCTC CTTCATCTTCTCCCCACCGCTCACACGATCAAGAGGGCGCCGTTCGGCCGTCAAGATCATCACCAAGGAA ACGGCCCCACCCGTCCCTCCGTCCTTCAGCCAGACTGCCTCAGAGACTGTCCTGACCGTCCCCTCACCGC TACCTGGGGAGTCGATGGTGATGGCATCCGGAGGTAGGGGGACCAGAAGCGGCAGGAGGGGGCGAGGAGG GAATGCTTCCATGACGCAGATCAAAGACAAACCTGCTATCACACCTGTTCGGGGCTCAAGACGTTCATTG GCCGTCTCTCACATCCCGTCCCCATCGGAAGCAGACTCCGTCGTCCTGCTCTCCCCGGCCACCACCGAAC AGGAGCCCGATGCCCAGGAGAAGTCACTGAGGCGTAACCCTCGTCGGGCGGTGCGTGTGGCACCTCACTC CATGACCTTAAGAACCCCTCAGGAGAAGAAGAAGGTCCGCAAGCTGAAGGCGTGGTAGCGCAGGTGGATT TTTGTAGTTTTGGTACAGAAATTCTTGGAGTTTTATATTTTTCTCCCTTCACCTAACCTTAAGATTTTCT TTGGAAGTGGACATATAAAGTATACACACTACCTGTAAATCTGCCTAAGTCAAACCAATTGAGATCACAG AAAGTTGTTCTAACTTTTGAGAAATTTGAAATACAGAAGGTAAAATAGACCTGCCAACTCGCATCCAAAG CATATTGATAAGAAATAGGTATATAGCATATATGTGAACATTTCATTTAATGATGATGTTCTTGGATGCT CACTATGCTAAATAAGTATTGGAAGGATAATGGCACTAAAAGCCTTGGTCTACGTTCGTGATAGGCCCAA AAATAGAAAAGATACAAGGTATTTAAGGAATCCCAGACATATATCATTTTTATCAAAGATGGAAGAGTAT CTATTTCAGTCATTCATGATAAAATGATGACAAGAAAATGTGTTGTTCTGTGTTGTTAAGTCAGTCCAAT TGTTCTAATTTGATTTTATAAGTTGTGAAATAACCATTAATGTTTATTATATTACTCCTTTGAAAGGAAG GAAGAAAGATATATTTTTGAGAATGTATTGTCCCTGTGTCGACGCCATCTGTGCTTTATTATGTATTGTC TGTCGTAATTAATTTCTTGATGACTTATAATTTGCCTGTTGTGTCGATAAACTTAGTGAGTGCCTGCCTT TCAAGTTAGTTTGCTCATATATATTTAAAATAGAGATCTTATGGCCTATTTTATAAAGTTTTGGGTGAGT TACCCATGTCATAACACATTACAAGTGACCCTTTGAGGTTCTTCAAATCAGATTTCCCATTATCATTATC ATACTGTGCTTTTCCTATCAGCAGTGTTGACAACCATACAGTTTTTAACTGAGCTGTCCAGGTTTTGAAA TATATATGTCGCTAAAAAAACTGAATGCTCAGATTTTGGAATTTTGTGAGTATGGATTTGGTTGCATATA TATGAGTGTGTCATTGAATAACAAATTAATTGATGAGAGGGAATTGTAGAAGGAAGCCCATTGCAGTAAA CAATACAAGATAGAAGTGATCACTTTGATTCGCTTCAAGTTCAGTTGAAATCCAATCTCTGTAGATTAAA GTGTTTATTTTGAATAATATAATAAAAATATGATCATAATATTCTGAATGGAAAGTTCAATTTCCCTTAA TTTTTATCAGGTTTATGGGAAATACATTCCCTTAATGTTGAAATAAGGAACAATAAATATGGGGTAACTT TCTGAGGAAAAGAAAGGGGTCACTAGTCGTACGTAAAGCTTAAACTTACAAGCACCTTTATCAAGTAGCC CTTGGAGTAACACCCATTGGCCTGTATTCTGAAGTCGGGTTCAACTTCGACCATGGTCTAACTCTGTGCC AAGATTATTGGGAGTCAAAAACTCAAAAATTCTGCTTATATTGTATATTTCTTAAATTTGCAATTATTTT CCCTTTGCTTTCATAATGAAAAAAATATTTCAGTAATCATTCTGAGACAGTTACAGTATAGGTGATTTTA GTGTCATAAGAGTTTATGAAATTGAACATGTGCTATTAGAGATTTGTGGCCCAATCGACTCCCCATAGTT ATATTTAAACTTTAATTCAAACCAGAGTTCAGAATAGGGGCCATTGTAAACTACTATTTTTACAGTAATT TGCTTTGTAAAACCGGCAAACATTTTACTTTTAACTTGTCCTGTTTTGTGTCTGTGCTTTCTTCGTGTCT TAATATATGATTTTGAAAACTCAAGTTTAAATTGACAATGTGATCTGTACAGAATGGAAGATGAACAAAA TACTTTTTGAAATTTACATGTATTAATAAAATTGTTGTATATGAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds