Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041623990.1 PREDICTED: Lytechinus variegatus Hermansky-Pudlak syndrome 3 protein homolog (LOC121427544), transcript variant X2, mRNA AATTTTATTGGTGTATTGAAGTACATTTGTGATACCTCTGCATTGCGAAAATCAAATAGTGTGTTACGAT CCTGGGCTCCTGCTGACATCGAGACTACCTGGGGCCTATAGAGCAGTAAGAGGTAGAACCAGACATGGTC CAGGTACTATCCTGTCACCACTTCAAGTCTCAGACTGTTGTGAGTCCAAGCCATGAGCCTCACATCATCT TTGCTTCAGGAAAGCACCTCTTTGTGGCTACATCGCATCAAACAGTTGAGGTGTACTTGCTTGATGGATC GGACTGTACCCTCGTCCATACAGTCAAGACTATTGGCCTTGCATGGAAAGGAGCATTCTGTCTACCTGGA AATTACATACTCCTCCTGGAGGACGAGGATGGCAAGTTTAACAATGTGAGAGCTTACTTCAACTGGGATC AATGGGACAAGTCAACCAAAACTAAGTCAGGTTCACCAACCAAAGTAGTTCCAACTGAATCACAGGGCTT GGAGGTTGTTGAAGTGCGCCCCAAGCGTCATGTGCAGTGTTTCTCTTGCTGCAGTGAGAATGGGAACTTG GTCTTGGGAATGCGGGATATCATCAGCATTTACCGATTAGTAGTCCATTCCGGCCAGCATGACTTTCAGC TTTTCATCGATATTGTCATTGATGGCTTCAAGACAGCCAATGTTGATATCTGTGGTGCCCATCTTGCCTT CACGTCATTCCACGAAGCCCACGTCCTCCGCATCAACTCCCAGAAATTCCACATATCCTGTGCTTCAGAT GGAGCAGCCGATTCAATAAGTGTAAGAGCCACAGGGTCGTCAAAGCCTTCGGAGGGTAAGTCCCACATGT GCAAGTCCACGTTAGATTCTTTCACTGACCGTAAACCGTCGGATACAGAGCAGGACAACTACTTTGTCAA TGATTCCCATTTCATTGAATGTACTTTTGATGCCAGGAGTCTGTCAGTGAGACCCTCTGAACCATCAGCA ACTCACAATCGTATCGTTCTTCAAAGTATCCTAGATGAGGAGTATCTTAAACAGAAGGATGGTCCTGCAG AAACCCTTGGGCCAGTCAGCAGTATTCCTGGCATTGCACCATTCAAAGTGAGACATGCTGAGAAGGCCAA ATCAGAAAAGAGGTCCAGCTCAGAGAAAGTTCCATCCTATGTTCATCTGCTGTACTGTAGGTTTTCCAGT ACAGAAGCCAGCCTCATGCTCGCACAACTCCTGCCTACCTACACAAAAGCCCCCTTTACACTGGAGAAAG CTGCATCGGCACAAGCACAGACTTCTGAGTCATTCCATAGTCGAAAACTACTGGGCATGTGTTGCCTCCT CAGTACCCCCAAGCAGGGCCTGGTCTATGACGTCACAGGCCAAGTTATTCCCCTCTCTTGTTACCTATAT ACGGGAGAAGCAATATCTTTGCAGGCTGGGGAGGATTTCCTGTATGCTGCTTCATCCAGCGGCCTGGAGA CCTACTCCCACAGAGTGAGTGCGGCCGCTATCTACAATAAAGAGACATTCGATGGCAAGTCTAATGCTTG CCCTGATCCAACTACGGACATCTGCCTAGTAGGACTGCGGCCGTTCTTGAGTGTTCAGAAGGTGGTGTCA TGTGACAGTCATGTGATTCTCCTGTGTAAGGCACCCAATGACCAGGGAGAGGAGTCGGGCAGTGATTGGA GTGTTTATGTTCTTCAGAAGGCCCCGGCCTCCGACCTCCTCGACGACATGATCGAGCTTGCGACAGGTTT CCGTCAAGCAAGCGTTTCGGCCTACCAGCATCTCATCATGGAGGCCCATCTGATGATGCGATCCAAGATG CTCCAGTGTTGTCATGGTGATGAGGAAGATGAGACTGAGGAGTACAGAACAATCGAGCATCGGTATCGAG AGACGAGTGCTCTTCTTGGCCAGATTTATGCACAGTCTACTAATGCCACAGACTGGTCGCTTGCTGTTCC GTACCTCACGATGTCTGAGCATTCTTTGTCAGAGGTGCTAGAGGCAGTCACTGGATCCTTCACAGAGCCA TTCATACCAGAGGATCATCATCTTGGACTAGGGTTGACAGATTTTTTAGATGTCAAGCTCTTCCAGGAGG ATTCTTCCAACGAACCAATGAATGAGGAGATTGCAGAACGTGTAGTTGATGTTTATCATCATGTCGTTCC TTCGCGATGCTCGCAGCTCTTTCTTTCAAGTGAGGTCAAAGGTCATTTGAGTCCGCAGAAGAAGTTGGAA GTCCTTCATAGTTTGAAGAAGCTGCAGTCAGAGAATAGTTATCAGTGGTCAGCCCGTGATAATATAGCCA TGATTCTCATCAATCTAGAATTGGGTGAGATGGAACAAGCAAAGTTTGCCACGTCCTGTCTTACGCCGGA TGAAGTAACGCATCTTATTCCCGACAACTCCTCCCTCATCCTAGACGCAAACAGACAATTCACCGACTTT GCTAAGCTGATGTGTAAAGAAGCAACAGAGTGTATGGTCGAAGTCTTACTCTGTCTCTTAGATCATGATC AGCTCACTCTCAAAGAGACTCTATGTATTCTCAAGGAATACAGCCCTGGTTCACTAGGCAGCTGCCCATT GCTGACCAGATTATTAGAATTGGTGATGTGCTCTGGAAAATGGCAAAATCTTTACTCTGAAGCAATGCCA GAGATTGTCTCGATATACTTATCCCAGTTGCTCCATGCTGACCAGCCTTCTATGATGAACACATCCAGAG CTTGTAGACGTACACATGCACATGTGCCACAGGGAGACGGCTGCTTTGCTGCAAGATTCAACTGGCTTAA CAAGCTCCCTCCTTTCCAAGGTTCTTTAAGGCAGACCTGCACTGGTCTAGAACAGAAGGCCAGGAACTGG AGGCTACAGAGAGGCCGGAGTGGTTCAGTGACCCAGCCCCAGACGCCCACAAAGAGTGGGGCTCCTTGTC CCTGCTGCTGCTGTAATGAAGTCCTTATGAGATTACAGAGTCTACTCTGCTCAGAGCACTTGACAGATGA AGTGTCATTGTACGTCATCAACGGCATTGAGGACATGAAAGAATGCAGGGGAAAGGGATCATTGCAGCTC CTCTGCCAAACAAAACTAGATACAAAGACTGCTTTATCGGTAGTCATTCAAGAATACCCAAGCATAGCAG TAGAGTTCTCAAGCCAACACTGCGGGCATCGGGAAGACCTGTGGTCTCATGTTCTCTCAGATCTTGTCAA GGGTCTGGAAGAGAAGACTACTGATGGGATGGAGACTCGCAAAGCCATCTCTCTTCAGATGTTGTCAGGT GTACTTGGCTACCTTGTACAGGAACTGGAAGCATCAGCCCTTATATCCCTTTTGCCCTCCGACCTGCCTC TGACCCTTACCATGCCATATATGGAGAGGTCATTGCTTAGAGATCGAGCTAGCAGACTCAGAGAGGAGAT AGTAGCAACAGGAATGGAAAGCATCAAGGGATGCTAAGGAGATAGAGAGAAGGAAGTAGAGGAGGTGTGG GGTGGATTAACAAGTAGATGTCCTGTGGAAAAGCTGCCCATGACCTTTACTATGTGCTACTAGTGTATGG AGAGGTCATTGCTTAGAGATCAAGCTTGCAGACTAAGAGAAGAGATAGTAGCAACAGGAATGGAAAGCAT CAAGGGTTGCTAAGGAGATAGAGACAGAAGGGGGTATGATAAGGGTGGAGTTGACTAACTAATTGTTGTC CTGTGGAAAAGCTGCCCTTGACCTTTACTATGTGCTATATGGAGAGGTCATTGCATAGAGATCGAGCTAG CAGATTCAAGGCCACCGCACATCTTATGACTGCTTGCGATCCGATTTTGGAACAAATCGCATTTTGCTAA TTTTCTGAGATTATGAATGGAGCATATGATTTTATTACAGGTTGAAATTAATTGAAAGAATACTGATATA ACCATTTTGAAAGATTGCAAGCGTTTATTTTGGAGTATAGGCCAATTTAGTTTCAAATCCTAACCAATCA TACGACTGCTATGACGTCATTACGGCTAGATGTTAAATTTCCTTTTATTCTAAGAAGGATGATAGCATAG TCACAGATTTGAACATGTGTATTCGTAAAATGATTTCGAACATTACACAGTAAGATATTCCATGTCTCTA TATTATCATCAAATTATACTACGTATTATTCCAAAATCAGGTCGCAGACCGATCGTAAGGTGTGCGGTCG CCTTTAGAGAGGACATAGTAGCAAAGGGGATGGAAAGCATTAAGGGATGCTAGGGAGAAAGAGGTAAGAA AGTAGGGGAGGGGTGGAGTGGATTAACTAATATTTGTCCTGTAGAATAGCTGGCCTTGACCTTTACTTAT ACCCTATGTGAAGCTATCATTGCTTAGAGATAAGGCCAGCATTAAGAACTGAAGCGGGGGAGTGTTTCTT AAAGCTCTTTGTAAGTTATGACCTAAGTAACGAGCGACTGAATGAACAACTGGTGATCCTTTTTTGTGGT AAATAATATACTGCATATGTTCATTGACGGTTTATTTAGCTTCTAAGACAGGATTACCAGTCGTTCGTAA AGTCACTCGTAGCTTGCGAACAGCTCTATTAAACACGTACCCAGGCTGGAAAAAAAATTAACTGGTGCAA GGAAGGAAAATAGGGAAAGAGAGCTTCAGAAAGAAAGAGAAGAGTGGAATCAACAAAGTAACTGAAGGGC ATCAAAGGCTTTCAGGTTGAGAATGAGAGAAAGAGAGAGTAATAGTAAGGAATTAAATGTAGATATATGT AATGCTACATTATCAATAGGTGCTATGGATGTCCTAAGAGTGTATTGTTTATAAGAGAATATTCCCATTT GAACTTGTATTTTGTCAACTATATTGTTTCAATAATTTGGAAATGTCACAGTTTAACTAAAAAGTGCAAT ATTTAAACTATATATCTCATATAAGTGTTTGTATTTCTATGCATTTTGTTATGCATGGCCCCATTTAAAA CAGCATCTCATTTACTGATGGGGCTACTGCGTTTTGAAATAATATGCAATAGATAAATATATATATATGT ATATAAATATATCAAATGATAAAACAAGGTTGAAACGTTCATGCTTTGTTCCAACATGGTTGTACATAGA ATTGCATATTTTGTTGTCAGTCACTTGAGAAAGACACTTGGGCATCGTGAAAATTTGTGCATCAAATAAA CTTATATGTTGAAACAAAGCATCGTGTCAACCCTGTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds