Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>GAUR01084110.1 TSA: Lytechinus variegatus AMR9006.40048.1.6 transcribed RNA sequence CAGCACATCCGAGATCCCGCGTTGATCTGATTCCTACTCTTTTGTGGAAATTCAATCTATACTTGACGTT TGGTCATAGGTCAAATGACATCATGGCATCAAACGCTACAAGGTCAGCAACCTCCAGCCCGGCCAAGAGT GAACGGAGTACAAGTGAAAAGAGCGAAAAGAACACCTTCACAGATCTGAAGTCAATAGTGAAGTCAGAGT ACATGAGCTTGGTGACTAACAGACGTTTCAAGAGAGCTGGAGAAATTAGGATGATTTGGTCGGCCAATCG TAAATGTATAGAAGAGAGAACGGAGGAGAATGAAAGGAAGAATCAGGAGCGTCCCTTCCAGTCTATCCAC ACTGCTGCTTCCTTCGATCAACTTCCCATTACAAGAAAGTGTTCCATAGAGGTTGGTAGTAACAAGCAGA AACAGACTGCCCCGCTGCATACACTTAATGGTGTTAGTTCAGTGCCATGTGTCTATACATGGGCTCCACT TCAACAAAATTTTATGGTGGAAGATGAGACGGTTCTGCACAACATTCCTTACATGGGGGATGAAGTCTTA GAGCAAGAACAGACATTCATTGAGGAACTCATCAAAAACTATGATGGCAAAGTACATGGTGATCGAGAGG GAGGTTTCATTGATGATGAAGTCTTTGTGGAGCTTGTTAGGAGTGTGGCAGCCTCGGAGCGTCAGATGAC AACCAAAAGAGAAGAAGAAAGTGGCTCCGATTTGACCCAGATGAAATTAGAAGAATTGAAAGAGCCGGAA TTGAAACCAGAAGAAGATTCTTCATCGTCTGTTTTTCCTAAAGATATCATCTTCAAGGCCATCGTCAGCT TTTTCCCTGAAAGAGGAACAATAGAAGAGCTCAAAGAGAGGTATCGAGAGCTGACAGAGAAGCAGGATCC TAACATCTTACCACCCGAGTGTACCCCAAACATTGACGGACTAAATGCCAAATCAGTGCCTCGAGATGAG ACTATGCATTCCTTCCACACACTCTTCTGCAGACGCTGCTATAAATACGACTGCTTCCTCCATCCATACC ATCCAACTCCTAGTCAGACCAAACCCAAGAACAAGGAATTCAGGACTAGTACTGAGCCATGTGGACCAAG CTGTTTTATGCATAAACAAGAGTATTGTATTCCAGAGCTTCCCACACCATCTACCGAGAAGAGTAAGGGA TCTCCATTCCGACCCGGCTTCAGGAAGTTGGGAGGTGGACGTTCTAACACCAGCACACCAACCAAATTCC TGGGAGAGTTAGAACCCGAGTTTCAGCCATATGATAAACCCTTTATTGAGCCAGAGAGTAGCAGTAATGA CAGCTTGCCAGCTGATACCAACCTGGTGACATCAGAGGAATGGAATGGAAGGGAGTCCTCACTCTTCAGA GTCTTGAGAACTGTCTATTATAACAATTACTGTGCCATGGCGAGGTTGCTCAGGACAAAGACTTGTGTTC AGGTGGCAGAATTTTCATCGAAGGAAGGTGAAGCAATGGAACTCTCACCAGAGCACAACACACCACCTAG GAAGAAGAAGAGAAAACAAAAGTTGTGGTCTATGCATTGCAGAAAAATTCAACTCAAGAAAGACAATTCT TCAACTCATGTATACAACTACCAACCTTGTGATCACCCTGGCAAACCTTGTGATTCCGACTGCACCTGTA TTATGCTCCAAAACTTCTGTGAAAAGTTCTGCCAGTGCTCCACAGAATGTCAGAATCGATTCCCTGGATG CAGATGTAAAGCTCAATGTAACACCAAGCAGTGTCCATGCTACCTTGCTGTAAGGGAATGTGATCCCGAT CTATGCCAGACTTGTGGAGCAAGTGTGTTCACAGATAAAAGTACAAGTGAAAGTATATCTTGCAAAAATG TCAGTCTACAACGAGGATGGAAACGGCATCTTCTGCTGGCTCCATCGGATGTTGCTGGGTGGGGTATCTA CATCACTGTTCCTGTCATGAAGAATGAGTTCATCTCAGAGTACTGTGGAGAGATTATCTCTCAAGATGAG GCTGACAGACGTGGAAAGGTCTATGACAAGTACATGTGCAGTTTCCTCTTCAATCTAAATAATGATTTTG TTGTCGATGCCACTAGGAAAGGGAACAAGATTCGTTTTGCCAACCATTCCAACATACCAAACTGCTATGC CAAAGTTATGATGGTGAATGGAGACCATCGGATAGGTATCTTTGCCAAGAGGAACATTCAGACTGGAGAA GAATTATTCTTTGATTACAGATATGGTCCGACTGATGCCCTGAAATATGTAGGAATTGAAAGAGAGATGG ACATCCTGGCAGCAAAGTGAAAACTACATCAACCATCAACCATCAATCTAACATTCCAGGAATATCAGGA CTAGTTCTGACACCACAATTGTGAGGTTTTTTCATGGTTTACAGTCTCTTTTTAGAAAGAAGATAGTTTT ATTGCACTGTAATCTTGTCTTCTGCTGAAAGCGTGGAAAGGAATTTTCATGTGATATGTTGATGATCCAA GTAAGGGATATTTGATATGAAATGATCAAGAGTGAATAGAATTTTGCATGTATATTGCAATAGTTGTCAC TTTTCACTGCCATCACCTTATCTTTATCTTGTCACCTACATGACCACTACTAACAAGTTGATTTCTTTGT GACTACCACCAACACCACCATCATTAAGAATGTCATCAATGCTACCACCTCCACCACTGTCACAAAATAT GTCACCACCACAACTGCCACTAATAATGCTATTACCATTAACATCACACCACCATCACCACCAAATCAAT ATTACGAGTGTTGTTACCATTACCACTGTTACAACCATCTACAATGTCAGCACCACTAATACTTTAAAAA CCATTAACTGCACCACCACCAAAATCACCACTAACGGTATCATCACAATTAACACCATTGGTACCATGAA CAATGTCAATACCATCACAACCACCATAATCATTGTAGTCACCTTACATTCATCACTAAAATCAGAACAT TTTCCCTAACCACCACCACTAACATCTAAAACGGTTGCACCATCACCGCAACTATCACCATCACTGGTTG ATACCACCATTATCATCACCATCTTTGCCACAACTATTACCATCATTACCGCCACCACCACCATCATTTT CACCTCGGTGGCTTCCACTCCGGCCACCACCACAACTGCTTACCTCACTTTTGGCTTCCACAAAATGAAT AAGTGGAAGACCATGTTCTATTTTCACCAGTCGTTAAAGATGTGGTAAGACTCACAAAGGAACTTGTTCC AATTGCAGACAATATGCATGTTCCCTCTTGTAGACTTACAATGTGCCCTTGTATGTTCCACTGTATTGAT AGCCAGAAGAGCTTTCATTTTAGTTGGTCATAGCTGCAATGTTCAAGATGTCTTCTCTGGAACTGTTGCA GTCACACTCAACAGCTGTACACTAGATCAGAATAATAAATCATATCATTGTGTACGTGTTCAGGTATATA ATAACAGCTCTCGAACAGAACTGTTACGACAGCCGTGCCTTATCGATTATCACTGTCACTGGCAAAATCA AATGCATGCATTTTTGTAATATTTTGAATATTTTTCATTTCAAGTAGTTTTATACTTATGCTCCTATTCA ATGACATGTATTTTTCTAATTGTGAAATAAAGTCAGACAAACTCATTCTTGTGCAGATCTGCTTCATGAC TTTGTCCTTAAAACATTTTTGTTTATTAAATGTCTGTGTTTCTTATATTTGTATGTCTTGGGCTCAATTA ATAAATGCAACTAAGATGCATTTCCCATATGCATGTTTTCGAATTGGTTGGCAATCAAATTACATTCAAT TTTAGGAGTTGCTTTTGATTGCAAATCACTCGGTTAAAGAACCCCCCCAAAAAAAATTAAATAAATAAAT AAAAAAATAAAAAATGGAGACAGACAAGGCAAAGAATAAGAAGGAAGAGGGGGTGGTGCAGAAGGAAGAG AATCATTTGCCGTGCACATGTAATATAACGGTAAAAGAAGAAAGAAAACAGAATTGAAATCTGCAGGATT TTAACCTGCCATCTACTAGCTGACATCAACTCTACCTCTAGGCTCCATGCCACTACTGGTCATTGGTACT TGCCATATAGTAGTCAAGGAATAGATCCCGTTGGGTACCTATTCACATCACCTGGGTCAAGTGCGGCTCA TGTGGATACATATTGTGCTGAAAGAAATTAATGCCTGGAGCGGACATGCCAACCCTTTTTATAGTATTTG TTCCTCGTGTTTGCTTTGAATACACTAATACTTTTTTGTATGATTTGTTTCTTTTTTTCTGATCATGGAG TATGTATTATACACAGCCAATGACACTAGTGCCGACAGTCCGAGACTATTAATAATCACTCTCAGGCCAG TAACTTGTTGCATGGAAAGAACAAGTAAATTCTTGGCTACGAGAGCATGTTTAAAAGAATGAATTATGAA GTAGAGTCATTTCACATGTTTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds