Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041620723.1 PREDICTED: Lytechinus variegatus cGMP-specific 3',5'-cyclic phosphodiesterase-like (LOC121424878), transcript variant X1, mRNA TGCGCCAGCTAGCTAGCTAGCGAGATGGTGAGATGAGATCCCGGATTGCCTCCAATATGTCTAAGAATGA CTGACAATGCCTTTTTATTCGATAAATTCTAAAGGATTACAATATTTTTGCCATCATTTTCAACTAACGT TAGACTAGAGTCTGTATCGATCATTAGCTTTCTGTTTATTCCAATTTGCAAAACGCAACTGCAACGGGAA ATTCACAGATCTCGAAGTTAATTCGAAGCCCGGAGTCGAAGTCGAATTTCCGACGAGGTGCTGGGGAAAT CGCCACCGAGGCTTCTCCTGCATTAATTGGTCATCGGAGCAGTGCTTGCTGCTGTGCCGAATTTCAAACC CCTGCACTATGAATATGCCCTTGCATAGATCAGCTGCTACTCTCTTCGTCGCTCGAGGTTTTTGATTGCA TCAATTCATTCAGTCACTTCGCCGTGCTCGACAGGACAATATTTTGAATCTGGTGACACAGTCTTCATGG TCTTGCAATAATTACCTGTGTATTCAAGTGATGGTGTAACTGGAACTGAGCATGGTGTGATGTGTGATCT CTTGCCCTATTGAAGTGTCAAACACATTATTTCTTTGTGGACAATCATAGAACATTCATGAACAATGGCT ACTGCTTCAAATCTTGTTTCAAGGGAAGAGGTTGAAAAATATCTGGAAGCTCATCATGATATTGCAACAG ACATTTTTGTAACGAAAGCTACCCCAGATATGGTAGACCAATGGCTGTCCAAGCATGCAAATTCCCTTCA TAAGCATGGGGATACTAGTCCTCAGGACGTTGGTGCTTGGCCAGATGTATCAATGAAATTAACTGAGAAA GGAGTGTTCCAGTCGATACGCAAGTCCTTCAACATATCTGGAACCAAGAGCCTGCGAAATCTGCTCTCAC CCCGCCGTAGGAAGTCAACTCTGAAAAGAAATAAGTCTGCTTTGAGGCAACTGGATGAAAAAGAACTCTT CATGGAACTCATCAGAGATATTGCCGATGAACTGGATCTGAATACACTTTGCCACAAAATTCTGATGAAT GTCAGTATTCTGACAAATGGTGACAGATGCAGCCTATTTCTTGCCCGAGGCAACAAAGACCGACGCTTTC TTGTTTCCAAGCTCTTTGATGTGAACGAGAACTCTACAGTTGAAGATTCATTGCACTCTGAAGAAGAGGA GATCCACATCCCATTTGGCCAAGGTATCGCAGGTCATGTTGCTCAAACCAAGGAAACGGTCAACATCAAG AATGCTTATGAGGACAAGCGTTTCAATCCTGAGGTTGACAAGATCACTGGCTACAAGACTCATAGCATCA TGTGTATGCCGATCTGTAATCATGATGGTGAGGTGGTGGGCGTGGCTCAAGTCATTAACAAGATCACAGG TTCTCATGAGTTTGCTACCAAGGATGAAGAGGTACAGGACAGCACAGAAATATTAGGCTCCCATGAATTC ACCAAAGCTGATGAAGAGGTGTTTCGAAACTACTTGACCTTTTGTGGCATTGGAATAATGAATGCTCAGC TTTTTGAGATGTCCGTCAATGAATACAAGAGGAATCAGATGCTACTTCAACTGGCTCGAGGTATCTTTGA AGAGCAGACTTCCCTGGACAATGTCGTTCACAAAATAATGAGACAAGCAGTCAGTTTGCTGAAGTGTCAG CGATGCATGGTTTTCATCTTAGAGACAACTGAAGAATCGTACTTGCCTGCTCAGCTGAGAATGGCAGAAG GGAAGCGACATTCAATAGCTTACCAGTCCAGTTTTGATGCTCCATTGAATGACGTCAAGTTGAGGAAATT AACTCATAGCTTGCAGGAACCAGTCAAGAACATTAGTTTTCTTAGGGGTTTTGAACTGACAGATGAAGAT ACAGAGAAACTCAAGACAGTCCCACATGAGATGCTGAAAAACTCAATCAATGCTACTATAGCTCGTCACG TTGCTGAAAAAGGAGAGACAATCAATATTGGCGACTTTGCTGTTCAGAAACAATTCAAGGAAAAGTGTAA TGTACAACCAGATTTCAGGATTCAATCCGTCCTTTGCCAACCCATCTATAACAGTGAGCAGAAGATTATT GGTGTAGCTCAGATGATCAACAAGGCTGCCAAACAGGCTTTCACAGAACAGGATGAACATCTATTTGAGG CTTTTGCAATCTTCTGTGGACTGGGTATCCACAACACTCAGATGTATGAAAATGCTATGAGGTTAATGGC CAAGCAACAAGTTGCTCTGGATGTGCTATCTTACCATGCCACAGCTCAACCAGAAGAGGTTGCAAAACTT AAGAAAAGTCGAGTGCCTTCAGCGCAGCAGTTAAAGCTTTATGATTTCAGCTTCAGTGACTTTGACCTGA CAGAAGACGAGACACTTCAAGGAACACTTAGGATGTTTATTGAGTGTAACCTCATTGAGAAATACCACAT CCCATATGACGTACTATGTAGATGGACGTTGAGTGTACGCAAGAACTATAGACCAGTAATCTACCATAAT TGGCGGCATGCCTTCAACGTGGCCCAAACAATGTTCTCCATAGTAATGACTGGAAAGCTTAGGAAGCTAT TAACAGATCTGGAGATTTTCTCCCTCATTGTTGCCTGTCTCTGCCATGACCTGGACCATAGGGGGACGAA CAATACTTTCCAAGTCAAGACTTCTTCCCCACTGTCTTTGCTGTATGGAACCTCTACCATGGAACATCAT CATTTTGATCACTGTATTATGATCCTAAACAGTGAGGGAAACAACATCTTTGAGTTCATGAATCCTGACG ATTATCGGGAAGCTATTAGGATCTTGGAGAGTGCCATTCTGTCAACGGATTTGGCTATCTACTTCAAGAA GAGGAATGACTTCTTCAAGCTGGTTGAAAAAGGGGAGCACACGTGGGACAATGAGGAAAAGAAAGGACTG CTCAGGGGTATGCTGATGACGGCATGTGATGTGTCTGCTATAGCCAAGCCATGGCGAGTCCAACAGAAAG TTGCTGAGTTGGTCTTCAGTGAATTCTTTGAGCAAGGTGATTTGGAGAGAGAGAAACTCAAAGAAGAACC AATGGCGATGATGGATCGGAAGAAGAAGGATGAACTGCCTAAGATGCAAGTGGGTTTCATTGATGGTATC TGCATGCCTGTCTACAAGAACTTTGCTGAATTTGAGCCGGCCCTAAGGCCGCTGCAGGATGGGGTTGAGC AGAATCGCCAGGAATGGAAGAACCTGGCGGACCGCTACGAGCAAGCTAAGTCCCAAGACCTGAGGGATAA TAAAGACTGGGGACCTCGATATAACTCCCTCCAAACAAGCAAACAATCAGAAAGCACAATCCTCCAGAAT GACAACGCCCAACTGGACAACCTTGCTGAGAAGCCTTCATTGGAATCCATGTCAAAACAGGATGGAAGTA GGGGTTCTTGCACCAGTGAGCCGAAGAAACGGGGTTCACAAATGAGCCAACAATGTAAGGAAGCCTTGGC GGCGAAGAAAAATAAGAGCTCCCTTTGTTCAGTAATTTGATCTCGGCTTTTATACCAATCATCTGAATCT CAAAAGTATTATCCAGATTTCATTATGAAATATCATATTCAATTTATTCAGTTTTTTTTTTCAAATTCGT GAATGATTAGCATAATTACATTTATGCTGTATTAGTTATTTTACATCACTTCCAAAAGATTATATTTGAT ATCTTATTTCATATTTTTCAAGACTTTACAACAATGCTGCCAATAAAAGCATATTCATATGTGATCAAAA TGTTATGCAATCTATTGTTCACTCCTAATGATTTATTTAATTGGTGAAAAATGTATTTTGATCATCATGG GTTTTATTTTAAGAATAGAATAATAGAAATATAAATGATTACTATGTGAAAATGTCACTTGAATAAATTA ATGATAATAAATTGATATATAGATGAACCTTTATAGCCAAATTAGATAGCAATATCAAACTTATGTTATT TCTAAAGAAATAACTGATTGGAGTTGATTTTGTTGGTCTGACTCTAGCACTAGGTAAGGATAATATTAAA CAGCATGTCCACTTCACTGTTATTAGTTATAATAATGATAATACTTTGTACTATTTATGTGGGTTGGAAC ACAACTCAGGCAAATTTTGAAAAACAGTTCAACTCCATGTGTTGCATGCACAAATTCAGATCCATTCTAT ATGGTAATATTCCAATTGCATTACACTCAGATATAATGGATTCGGCATTCTGAATATGAGTAAGTTGAGT TGATTTTTTTTAAATGACCAACTCAGATGTCTTGAACAGACAATACACTGTATATAGCCCTGAAAGTCAA TCCGTGCCATTTTTGCTTGTTTGAGGGGAGATTATTTCAATAATTTAGTCAGAAACCAAAGTGATTGTAA TTTATTTTTCGTGTATAGATGTGTTGACACAAACTCCATAATTTTTTTTCTTATCTCTAGAACAATGAAT AATTTTGTTGATGTATCCCATGTGTATGTTATGAAGCAGTAGTGTGTGACACATGTGTACAAAACAATAT CTAGTTACTTAATACTAGATATATGTCTTTAGAAATCACCTCAACTCTCTAGTGTGCTCCATGTTTTATC TATTGATATTTTGACCATGTCTTGCCAAAAAGAACTTGCCACTGGGCATGATTCTATATCTCACAGTGTG CACTGCATGAATAGTACTTTCTCTGCCCATAACAGTAAATCAATGTGTAAGAACATCTCACTCTAACATC ATAACACAGACAATTTTCTAATGTTTCATAGAGGTGAACTAAGTTTTCAAATAACTTATAAACATGAGGG TTTTTTTCAATATCAAGATAAATTTGAAATTTTGTACAGTTTAGAAGATTTTTCTTTTCATAGAGCCAAA GACAACAAATGTCTTAGTACTGTACTAGTATTTTACCTTGACCTTTTGTGTGTATAATGTATTATCAGTA TTTTTGTGTGATAATCAAATTTTAGATTTGGAAAATTTTACCACTGTTAATATTTAGATATGTAGATTAT AGATACAATCTAATTTTTATTCAAACTTTCATAAAACATCTTACAAAGAGATAGAAATCATATACTGTGA TTCAACCAGAGAATATGTGATATAATATGAAGAATCAATTCAAATTAATGGAGAAATACTTGTAAAGTGA GGTTTTATTTTTGCTTTTGATTTGATATCTCATTCCAGTTTTTAAAAGCCATCACTGGTTAATTTGCCAT CAATATCAAATTCTATGACAATATTATCCCAACAGCAAATTATATCAATGTTTCCAGGAGATGCTTTCAG GCCCTCTTGATATCCAAAGTTACTGTAAGTTTACAGATGTTATTCAGACCTCATACATGTAGTATATGTA CCTGCTTATTATTTTCTGCATTCCTACTCACCCAAAACCAGACCCTTTCAGGGTAAGTTCTCAAAGTCAT AAGCATGCACAGTATCGTGTGCTTTGCAGATGAGGTGCATGCTTTGAAAATTGCTAGTGCTCTTAGCAAG CGACTCAGGTGCCATACTCATTTGGAAAGGATAGCAGTTCTTGCAATGTGCTTTCACACTGCAAAAATAC CCACGATATTGGAAAGTTATCTACAATAGTTTTCACTATCTTAAAGAGTAGCTACTAATTAGCGGGTGTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds