Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041620726.1 PREDICTED: Lytechinus variegatus cGMP-specific 3',5'-cyclic phosphodiesterase-like (LOC121424878), transcript variant X4, mRNA GCGCCAGCTAGCTAGCTAGCGAGATGGTGAGATGAGATCCCGGATTGCCTCCAATATGTCTAAGAATGAC TGACAATGCCTTTTTATTCGATAAATTCTAAAGGATTACAATATTTTTGCCATCATTTTCAACTAACGTT AGACTAGAGTCTGTATCGATCATTAGCTTTCTGTTTATTCCAATTTGCAAAACGCAACTGCAACGGGAAA TTCACAGATCTCGAAGTTAATTCGAAGCCCGGAGTCGAAGTCGAATTTCCGACGAGGTGCTGGGGAAATC GCCACCGAGGCTTCTCCTGCATTAATTGGTCATCGGAGCAGTGCTTGCTGCTGTGCCGAATTTCAAACCC CTGCACTATGAATATGCCCTTGCATAGATCAGCTGCTACTCTCTTCGTCGCTCGAGGTTTTTGATTGCAT CAATTCATTCAGTCACTTCGCCGTGCTCGACAGGACAATATTTTGAATCTGGTGACACAGTCTTCATGGT CTTGCAATAATTACCTGTGTATTCAAGTGATGGTGTAACTGGAACTGAGCATGGTGTGATGTGTGATCTC TTGCCCTATTGAAGTGTCAAACACATTATTTCTTTGTGGACAATCATAGAACATTCATGAACAATGGCTA CTGCTTCAAATCTTGTTTCAAGGGAAGAGGTTGAAAAATATCTGGAAGCTCATCATGATATTGCAACAGA CATTTTTGTAACGAAAGCTACCCCAGATATGGTAGACCAATGGCTGTCCAAGCATGCAAATTCCCTTCAT AAGCATGGGGATACTAGTCCTCAGGACGTTGGTGCTTGGCCAGATGTATCAATGAAATTAACTGAGAAAG GAGTGTTCCAGTCGATACGCAAGTCCTTCAACATATCTGGAACCAAGAGCCTGCGAAATCTGCTCTCACC CCGCCGTAGGAAGTCAACTCTGAAAAGAAATAAGTCTGCTTTGAGGCAACTGGATGAAAAAGAACTCTTC ATGGAACTCATCAGAGATATTGCCGATGAACTGGATCTGAATACACTTTGCCACAAAATTCTGATGAATG TCAGTATTCTGACAAATGGTGACAGATGCAGCCTATTTCTTGCCCGAGGCAACAAAGACCGACGCTTTCT TGTTTCCAAGCTCTTTGATGTGAACGAGAACTCTACAGTTGAAGATTCATTGCACTCTGAAGAAGAGGAG ATCCACATCCCATTTGGCCAAGGTATCGCAGGTCATGTTGCTCAAACCAAGGAAACGGTCAACATCAAGA ATGCTTATGAGGACAAGCGTTTCAATCCTGAGGTTGACAAGATCACTGGCTACAAGACTCATAGCATCAT GTGTATGCCGATCTGTAATCATGATGGTGAGGTGGTGGGCGTGGCTCAAGTCATTAACAAGATCACAGGT TCTCATGAGTTTGCTACCAAGGATGAAGAGGTACAGGACAGCACAGAAATATTAGGCTCCCATGAATTCA CCAAAGCTGATGAAGAGGTGTTTCGAAACTACTTGACCTTTTGTGGCATTGGAATAATGAATGCTCAGCT TTTTGAGATGTCCGTCAATGAATACAAGAGGAATCAGATGCTACTTCAACTGGCTCGAGGTATCTTTGAA GAGCAGACTTCCCTGGACAATGTCGTTCACAAAATAATGAGACAAGCAGTCAGTTTGCTGAAGTGTCAGC GATGCATGGTTTTCATCTTAGAGACAACTGAAGAATCGAACATTAGTTTTCTTAGGGGTTTTGAACTGAC AGATGAAGATACAGAGAAACTCAAGACAGTCCCACATGAGATGCTGAAAAACTCAATCAATGCTACTATA GCTCGTCACGTTGCTGAAAAAGGAGAGACAATCAATATTGGCGACTTTGCTGTTCAGAAACAATTCAAGG AAAAGTGTAATGTACAACCAGATTTCAGGATTCAATCCGTCCTTTGCCAACCCATCTATAACAGTGAGCA GAAGATTATTGGTGTAGCTCAGATGATCAACAAGGCTGCCAAACAGGCTTTCACAGAACAGGATGAACAT CTATTTGAGGCTTTTGCAATCTTCTGTGGACTGGGTATCCACAACACTCAGATGTATGAAAATGCTATGA GGTTAATGGCCAAGCAACAAGTTGCTCTGGATGTGCTATCTTACCATGCCACAGCTCAACCAGAAGAGGT TGCAAAACTTAAGAAAAGTCGAGTGCCTTCAGCGCAGCAGTTAAAGCTTTATGATTTCAGCTTCAGTGAC TTTGACCTGACAGAAGACGAGACACTTCAAGGAACACTTAGGATGTTTATTGAGTGTAACCTCATTGAGA AATACCACATCCCATATGACGTACTATGTAGATGGACGTTGAGTGTACGCAAGAACTATAGACCAGTAAT CTACCATAATTGGCGGCATGCCTTCAACGTGGCCCAAACAATGTTCTCCATAGTAATGACTGGAAAGCTT AGGAAGCTATTAACAGATCTGGAGATTTTCTCCCTCATTGTTGCCTGTCTCTGCCATGACCTGGACCATA GGGGGACGAACAATACTTTCCAAGTCAAGACTTCTTCCCCACTGTCTTTGCTGTATGGAACCTCTACCAT GGAACATCATCATTTTGATCACTGTATTATGATCCTAAACAGTGAGGGAAACAACATCTTTGAGTTCATG AATCCTGACGATTATCGGGAAGCTATTAGGATCTTGGAGAGTGCCATTCTGTCAACGGATTTGGCTATCT ACTTCAAGAAGAGGAATGACTTCTTCAAGCTGGTTGAAAAAGGGGAGCACACGTGGGACAATGAGGAAAA GAAAGGACTGCTCAGGGGTATGCTGATGACGGCATGTGATGTGTCTGCTATAGCCAAGCCATGGCGAGTC CAACAGAAAGTTGCTGAGTTGGTCTTCAGTGAATTCTTTGAGCAAGGTGATTTGGAGAGAGAGAAACTCA AAGAAGAACCAATGGCGATGATGGATCGGAAGAAGAAGGATGAACTGCCTAAGATGCAAGTGGGTTTCAT TGATGGTATCTGCATGCCTGTCTACAAGAACTTTGCTGAATTTGAGCCGGCCCTAAGGCCGCTGCAGGAT GGGGTTGAGCAGAATCGCCAGGAATGGAAGAACCTGGCGGACCGCTACGAGCAAGCTAAGTCCCAAGACC TGAGGGATAATAAAGACTGGGGACCTCGATATAACTCCCTCCAAACAAGCAAACAATCAGAAAGCACAAT CCTCCAGAATGACAACGCCCAACTGGACAACCTTGCTGAGAAGCCTTCATTGGAATCCATGTCAAAACAG GATGGAAGTAGGGGTTCTTGCACCAGTGAGCCGAAGAAACGGGGTTCACAAATGAGCCAACAATGTAAGG AAGCCTTGGCGGCGAAGAAAAATAAGAGCTCCCTTTGTTCAGTAATTTGATCTCGGCTTTTATACCAATC ATCTGAATCTCAAAAGTATTATCCAGATTTCATTATGAAATATCATATTCAATTTATTCAGTTTTTTTTT TCAAATTCGTGAATGATTAGCATAATTACATTTATGCTGTATTAGTTATTTTACATCACTTCCAAAAGAT TATATTTGATATCTTATTTCATATTTTTCAAGACTTTACAACAATGCTGCCAATAAAAGCATATTCATAT GTGATCAAAATGTTATGCAATCTATTGTTCACTCCTAATGATTTATTTAATTGGTGAAAAATGTATTTTG ATCATCATGGGTTTTATTTTAAGAATAGAATAATAGAAATATAAATGATTACTATGTGAAAATGTCACTT GAATAAATTAATGATAATAAATTGATATATAGATGAACCTTTATAGCCAAATTAGATAGCAATATCAAAC TTATGTTATTTCTAAAGAAATAACTGATTGGAGTTGATTTTGTTGGTCTGACTCTAGCACTAGGTAAGGA TAATATTAAACAGCATGTCCACTTCACTGTTATTAGTTATAATAATGATAATACTTTGTACTATTTATGT GGGTTGGAACACAACTCAGGCAAATTTTGAAAAACAGTTCAACTCCATGTGTTGCATGCACAAATTCAGA TCCATTCTATATGGTAATATTCCAATTGCATTACACTCAGATATAATGGATTCGGCATTCTGAATATGAG TAAGTTGAGTTGATTTTTTTTAAATGACCAACTCAGATGTCTTGAACAGACAATACACTGTATATAGCCC TGAAAGTCAATCCGTGCCATTTTTGCTTGTTTGAGGGGAGATTATTTCAATAATTTAGTCAGAAACCAAA GTGATTGTAATTTATTTTTCGTGTATAGATGTGTTGACACAAACTCCATAATTTTTTTTCTTATCTCTAG AACAATGAATAATTTTGTTGATGTATCCCATGTGTATGTTATGAAGCAGTAGTGTGTGACACATGTGTAC AAAACAATATCTAGTTACTTAATACTAGATATATGTCTTTAGAAATCACCTCAACTCTCTAGTGTGCTCC ATGTTTTATCTATTGATATTTTGACCATGTCTTGCCAAAAAGAACTTGCCACTGGGCATGATTCTATATC TCACAGTGTGCACTGCATGAATAGTACTTTCTCTGCCCATAACAGTAAATCAATGTGTAAGAACATCTCA CTCTAACATCATAACACAGACAATTTTCTAATGTTTCATAGAGGTGAACTAAGTTTTCAAATAACTTATA AACATGAGGGTTTTTTTCAATATCAAGATAAATTTGAAATTTTGTACAGTTTAGAAGATTTTTCTTTTCA TAGAGCCAAAGACAACAAATGTCTTAGTACTGTACTAGTATTTTACCTTGACCTTTTGTGTGTATAATGT ATTATCAGTATTTTTGTGTGATAATCAAATTTTAGATTTGGAAAATTTTACCACTGTTAATATTTAGATA TGTAGATTATAGATACAATCTAATTTTTATTCAAACTTTCATAAAACATCTTACAAAGAGATAGAAATCA TATACTGTGATTCAACCAGAGAATATGTGATATAATATGAAGAATCAATTCAAATTAATGGAGAAATACT TGTAAAGTGAGGTTTTATTTTTGCTTTTGATTTGATATCTCATTCCAGTTTTTAAAAGCCATCACTGGTT AATTTGCCATCAATATCAAATTCTATGACAATATTATCCCAACAGCAAATTATATCAATGTTTCCAGGAG ATGCTTTCAGGCCCTCTTGATATCCAAAGTTACTGTAAGTTTACAGATGTTATTCAGACCTCATACATGT AGTATATGTACCTGCTTATTATTTTCTGCATTCCTACTCACCCAAAACCAGACCCTTTCAGGGTAAGTTC TCAAAGTCATAAGCATGCACAGTATCGTGTGCTTTGCAGATGAGGTGCATGCTTTGAAAATTGCTAGTGC TCTTAGCAAGCGACTCAGGTGCCATACTCATTTGGAAAGGATAGCAGTTCTTGCAATGTGCTTTCACACT GCAAAAATACCCACGATATTGGAAAGTTATCTACAATAGTTTTCACTATCTTAAAGAGTAGCTACTAATT AGCGGGTGTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds