Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041619129.1 PREDICTED: Lytechinus variegatus lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like (LOC121423701), transcript variant X2, mRNA ACGTTAGAAACAACAAAATGGCGAGCTACTTGAGATTTTTGCAGCCCAAGAATTTGTTATTTTACAGCCG TCTTTCGTCAGGTCTGCAAAACTCACTTCGACATCATTCATCATGCATGTACTTTACACAAGAGAGACAG CCATTGCCTACTATCTGTGGGCAGTCCAGCTCAAGACTGGTAAAGAAGGCTAGTCTATCCATGTCATGGT CTAGGAATGGACCAAGTTTCTCAAAAGCTGTCAGACAAATATCAACATCACCGGGACGATGTGGTGAGGT CGTTCAGTTTAAGCTATCGGATATTGGTGAAGGCATAATGGAGGTAGTGGTTAAAGAATGGTACGTCTCA GAGGGAGACACAGTGGCTCAGTTTGACAGCATATGTGAAGTGCAGAGCGACAAAGCCTCGGTGACCATCA CCAGCCGGTTTGATGGGGTGGTCAAGAAACTTTACTACGAGCTCGAGGAGACGGCTAACGTTGGCATGCC CTTGGTCGACATTGAAGTAGCTGGAGGTGCATCGGCAAGTCAAGAGGGGGATGTGTCGGGAGAATCATCA AGTGACTCAGATAGTGATGGTGAACGGGAAGCGGTGTCCGCTACCAGAGGCAAAGCTAGAACTCTCAGTA CTCCAGCCGTCAAACGTCTTGCCATGGAACATAACATATCATTAAATGATGTACAAGGCACAGGTAAAGA TGGTCGAGTACTCAAAGAAGATATGCTGCGTCATATAGAACAATTGGAATCGGGAGTTCCTCAGTGGACA CCAGTTGCTGAGGAACTTGCACCTCCACCATCACAAGCCTTCCAGCCAACGCCCAAAGCCCCACCTCCTG TCCCGCCCCCTGCCACACCCACTCCTGTACCTCAGCGAATCCCTGTCCGGGCCGTAGCCGGCCAGGACCG GACAGAACCCATCAAGGGCATCCGTAAGGCAATGGTCAAGGCTATGGTCAAATCTAATGCCATTCCTCAC TTTGGGTACAAGGATGAGGTGGACGTGACAGAGTTGGTCGCTCTGAAGTCACACTTCAAGGCAGCCGCCG CAGCCAGGGGTATTCAGTTCTCTTTCACACCAATATTTATTAAGGCAGCATCGATGGCCCTTTCCTTCTA TCCTGAGATTAACATGAGTGTAGATGAAAAATGTGAAAATATAACATTCAAGGCTGCCCATAACATTGGC TTTGCCATGGATTCACCTCAGGGTCTAATAGTACCCAACGTAAAGAACGTCCAAGCCTTGACACTCCTGG AAGTAGCCCAAGAACTCAACAGGCTCATGGCTCTCGGAGTCCAAGGCAAACTGGGACAAGATGATCTCAC AGGGGGCACGTTCACACTCTCAAATATAGGCACGATTGGTGGAACATACGCAGACCCTGTTATATTTGCA CCTGAAGTAGCTATTGGAGCAATAGGAAGAATACAAGTACTCCCAAGGTTCGATGAAGACGGTGACCTGA TCAAAGCCCACATCATGAAGGTCAGCTGGTCGGCGGATCACCGGGTCTTGGATGGCGCCACCATCGCTAG GTTCTCTAACCAATGGAAATCATACTTAGAACAACCTGCTACCATGCTCATGGACTTGAAATAGATATAT CAACAATGCTGCTGAAATGTTGTGACAGTTCTAACATGGATATCCTAGTTCACCACTGCACGATGCCATT TTCTATTCATCATTTCCCCCTCAGCGGATGGTGACGGCGACTATTCACTCAGGCAATGAATTTGTCTGCT AGATGTTGGTTTGGGTTCATGCTTAAGACTGAAATGTGTTACGATTGATCCTGTATTCAGTGTAAAGTGG TTTGTAAGAGCGTCTGCACTTTGTGTCTCATGGAGTCCCCAAAGATGCGTATGGTATCCTATTTGCAGTA GGCCTATTTCATTCTGATTTACCTCACTAAACTGCATGATAAAAAAATACTGTTTTTCCAACAGTGTGTT ACTACACATGTGAAAATACTGTGTTTTTACCCAAAAATATCATATTCATCCCTAAGAATACTGCAATAGT GTTCACAAGACTCCCTTAGTTTGTTGCTTACAACACTATGGAGGGCAGTTATTAAAAGGAGCTATATAAA TGTTGATAAAACATTGGATATCTAAGGTATCTCGACAAACATTTAAGCTATGTGAAGCCCACAATTTTAA TGGGAATCCTTGTCAGTCTTTCCACTTAGAATTTTCCCATTTCGGGATCCACCAAAATCACCCAACAATG GTGACTGGTGTAGCCAGAGTGAAATTGTGCACGCAGTGAAGCCATGGACGTGTCTTGTTACGGTACCTTA ATGAGGAATTATGTCAACATGTTGCTAATAGTTAATATCAGATGGTCTGGTTTTTCGTTATATTTCGGGA CAAGAATTGTATGGCATGATCAATTTGGTTTTATGTAATGGGGAAAAACCTTATAAAGGTATTGGGTCAT CTTAAAAGCTGCAAATGAATACATGTCTGAAAAAATTGGTGAATATACAAGCTGTTAGCAATTTTAGCTC TCCAGATTTCACAAAAAACACAAATTTTGAGGATATACTGGAGGGATCAAAGTGAGTAATGTAACTTATG ATGTTACAACACCGAACATTGTCTTGGGAATTACGCGAGACTATTCAAGAATGAAATTTTGGTTGAATAT CTAGACACTCGGTAATCAGCTTCTAATATCACTACCGGTGTATTTTTTTCCATTGATTTTTGCCTCTTTG GACACTGAAAATGAAGACAATTTCTCTTTTGTCTTAAGGTTGCACAGTGATGCATTGCCTGTAAAGATCT TACGGTGCATTGCTTGGTTGTACATTAATGCAATCCATCTGCTCTGACTCGTAACGATCAATAGTACTCT AAAAAAAATTGTAAAAATAGGGAAATAAATTGGTTGTGGCTGAATCTTCATTCTTTACTTTTTTTTCTAA TTGGGGTTTGTGGCATTTCTTTTTTTTTTCATTGGTCTAACCAATTTTTTCAATCACCTATTGATGTAAC TTTTTTATATTGTTTATTTTCATTTCAATCATGGAATGTTACTGGTAGACGTTGTGAAAGTATATCAAAT CAATTGCACAAATTCAAAACACTGAATGAAATTAATCAGACGATCTCCTTGTCTTGTATACCGGGCCCTA TTTCATAAAACTCATTTTCAGTCGTAAAAGGTATGAGCTGCTGTGATAAGCTACCCAACTCATGACATTT TATTGGCTGAGAGCAAATTTGTTATCAAAATTGAGCATTTGTTATTGATGACATGTTTTATGAAACTGGG CCCCGGGTGAGTTCCTAATGCTGATGTGTGCCGTTGTATATAGAAATACAGACTTATTTTTGGATTGTAT TGTTTTACAAATTATCGTCATCCATTAACATGTGTATGATTATTCTCATATCCCAGAGGCGCAATGTATT TCTGTATTTATTTCATGTATAGTTTTTAATGTCATCTGTTCATTTGCATTCTATGGTGACTTTAATGAGA CCCATTCAGAAATGAAAATTGAGACACTTAGATTATATCAATGGAAAGTATACAATGTAAACAATAATTT ATGAAATTGCCGGTTGAACTTGCTGTTGGCTTATTCATATCATGCCAAATGAAGCATTAATGGAGCAGTG ATGGCATGGCTCAACAGACAGGTGCCCAAAGTATGAACCACAAGAGCCAGGGTTCAAATCCCACTGGAGC GGTAGTGTTCCTTGGTGTGACACCAGTCTACATTTTCCACTCTCCACCCAGGTGTAAACATGTAAATTAC AATCAGTTTTCCGAAGTATTACCCTGGGACCCGGTTTCATAATAACTAAGAGTAACAATTATGGTAACTG CAGAATGGTTGCTGTTGAAATCTTATTTGAATGGCAGCTGAAGCGTTAACAGTGGTATTTAGCATAATTG CAATTTCTTTATGAAACTGGCCCCTAAATCTCCTGCACTTACCGCACAGAAACGTTGTTAGTCAGGCGCG TATCCCGCATCTGATCCTACAAAGCATTTCATGGACCCAATTGTCCGGGGACAATAGTGACTCCATAATG CTTGTGCATGGGATCATACATTTATTTGTCATAGTTGATGCTGGATACGCTAGTGTTTAATAGTGCTACC AATGTGCTAACAGAGGCCCTGTTTCAAGTGATAATGTGGCAGCGATGCCTAATTTTCTAACAATGCATTA CTTACACATTGAAATAAATGTGTGGATTTCTCGATCAGAAAGATGTGACTTGGCTTACTGTTAGCGTTTT GCTAGGCTATCAATGTTTCTGTGCGGTCGGCACTGGTTGTTCACCGAGGGGAACTGTCCCCTCTTCACTT GCGTTTTGGAGCATGTGGTTCCAATAGCATTTGTGCAATAGTAAAATGGGAAATACACATCTTCTCCATG CATCTTTGTATTCAAAGTTCATTAAGCTTTCCATAGGTAGAAAATTCTTATTACATTGGGTCTTTGATTA TCAAATAAATAATGCAATGAAGTGCT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds