Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041618925.1 PREDICTED: Lytechinus variegatus glycogen debranching enzyme-like (LOC121423566), mRNA TCAGACATGTATTTATCTTTCTGTTCACATGTAAGGAGAATAGATGGACCATCATTGAATGACTGATGTG TTGGACAGATCGGGAAAATAGTGGTTGCAATTGCTTGACATGTTCAGCAAATTTTTATGCAGTGTCATTC TACAACCAGCAAACAAAGCATGAATTGCATTTAAAGTGATAAATTGTTTGGAGCTATTCTGTGCAGTTTA TAGCTTTGTTTGATTTGTGCATGCTTGTCAATAGCCAGGCAGGATGCCAGCTGATTGTGGGAATGGAGCG ATCCGATTGGCCATCAGGTGACACACCCCCAGTCACTCCTCCAACTTATTGTTCCACATTTGTGCACTCC ATGTACAACAGCAGCACACATGCATTTCCACAAAGTGAATAGTATGCATGATACACACTTGCACAAGGAG TAGATTCTCTGGTGTTAATTTTGTCTACACGTCAATTGATTAGCCATGGAGGTACCGGTATATGGATGTT GACTAGTTTTGGGCCCGAATTCACAAAGGTGGTTTTGAAAACCCACGGTTGAGTCCATGGTTTATGCAGA TTTCCTGTATAAATTAAGCTTATTTTACTGCGTATGTTAAAAAATGTCCAATGCTGATGTGCGCTTTTGT CAGAGTGCGCGAAATTGACGCTTGTTGCCGTGGTTATCCAAGCTATTTTATTCATGAGTCCACTGTTTTG AATAATGAGTCCACTCTTCAAATAGTGGACTCATGAATAGAATAGCCTATCTAACCATGGTAGGCATCAA TTTGGCGCACTGTGACCAAAGCGTGCATCGGCATTGGAATTTTGTATACAAGCGCCTGATACGCGCTAAG CGTAATTTTTAAAGGAAAGCCATGGACTTAACCGAGGGTTTTCAAAACCAACTTTGTGAATTCGGGCCAT AATGTCTGATTTCTTCTCTGATTGTTTAGAATCATGATAAAATGGCTATAAAATATGCTTCATGTACATG GTTGAAAGAATGTGGTGCCGTCAGTGGCTCTCCTTTTAGAGTTTGAATAATCGACAGCTCAGGAAATCAT TTGGAAGGAAACACCAGAGGAATAGAGTGAAAACTATCTGAAAACTATTTGAACTATTATACCTTCATTA TCTGGGATACTGGCAACAGAACCATTGATTAACATTGCAGTGTGCAATCCCTCATTCTCCACGGCAAGAC TTTGAGTATTATCTTCAAAGGAAGAAAGAGGTCTCAAATTTATTGAGACTTTAGGACTACAGTTTGAACA ACCAGGAACTTGGAACATATTTGTGGATTTTACTTGTGTTTTCTTCTGTAGATCTCAAATGGCATAACAA GGATTTGTTACCTGAAGCAGATCAACATGTGTATGAATAGGAGATTTATGAGAGCCTGAGGGTTTTACTG TCAAGGGTGAATGGTTTCAGGCTGTAAAAAAAAAATCTGCTCCAGAGAGTACCAATAAACAAATCCTATG ACTATGCAATCTTGTTCTGCGAATCCTGGTGTGTATGTTATGCCACTACTGCATTTATTCAGTGAGTTTG TACAGAAGGAAGTTTATTTTATTTCATTTGTTCAGCTGTGAATTGGAATGACTGAGTGGAGTATATACCG GTACTGTATATTCATTGAATTTTGACTCTTAAAGTTGATCCTCTTTGTGTGGAACCAACATGGCCTGGAA GCTGCCAGCACCTCTTGGTTGGCGTTGTACTGACAACTAAAACTGAAAAAAAATACAACTTTACTCACTG TAAAGAGACAGTATCTTGTACAGTGTGGCTTAACTTTTATTTGCAAATCAAAATTGGAAATTGAGCTGAA GCTGGAAGCCTTTAATTTTACCAGTATTTTAGAGTGTGGAACTTCATAATCAAATGGAACATAAATCTTT TCATTGGATTTTGGCAATAGAAATTGAGTGACTTCTTGTGAAACTGGATGGAATTGTGTTGACCTCAAAC TGTAAACAAGTATTAAGTGGTTCGAAACCATTAAAACCTCAATAATATCTATACTGTAGATATTTAAAAG CTACTTTGATTTGCTATTTGTCGCTGGAAATTTCAGCCTCAATGTCTGACCAGGAAACAAAAGTGAAACT TCACATTTTGGCATACATTCTGCATGCCTAAGGAATAAAAAGATCAGATTGCTGAAAATGCTGAAAATAT TGGTCAGTTAATGTTACTTTAATATGGTTTATCGGACATGCTACTGCTTTGAACAACTGTTAATGGTTGA ATAGTTGGCTTTTGAGTGTGTTTAACTAATGCTGACAACCATTGGAAATTGATCTGCGATGGTAAATGAA TGTTTGCTTAGCTGTGAACATCAATAATGATCTACACACTTTACAGCTATCCTAACCAAATCCAGTCTGA AACAGTTCTATGAGGATCATTCGTTTGTCTGTTGGCAACGTTGAATTATTATTTTCATTTGGCTGGCTTT TGCACCATTTTAAGTACATGTGGTTCCTGATGTATTGAACAAATATCAGGTGGTCTGATTGAATGCTTGT ATTTCATTAACAATCATGTCATCTCTTTGGATCAGTGCACATGGTCGTCTTGACCTTTCGATCCGAGGGT CAACGATCATCATGGCCAGTCAGGTCAGAAAGATGACCCTCAATGAGGGAGAACACAAAAACACCACTCT TTACAGACTCAAAAAAGGATGGACATTGCACTTCCAGCTTGGGCCGTCCCTGCAGGCTCGGAACGTAAGC GTCTTCACCAACCATCCACCCCAAGGGAAGACCTTCAATCGGAAGGAGTTCTACGAGCTTGGTTGGGAGA TGGCTTCCCAGTCACAGTGTGACACGTCGGAGAGATACTGCAAGGTGGAGCTTGGGCTTGCAGGAGCGTT TCAGTACTACTTCACGATCGATAACAGTACGAAGGAGGAAGGCTCAGGGTTCTTCTTGGTAGATCCTGTC CTGACCGTGGCTGCAGAGACGGACATCCTTCCCCTCGACTGCATCACTGCACAGACAGTACTCACCAAGA GCCTGGGACCTTTCTCATCCTGGGAAGATCGGTTGAGGGTCAGCCACGAGTCTGGATACAACGTCATCCA CTTCACACCGATCCAGGAGCTCGGGGCATCCAATTCCTCCTACTCCATCAGGAACCAGCACGCCATCAAC CCGTCCCTCGATTGCAACGGCAACAAGGTCACCCTTGCGGATGTCCAGGGTCTGGTTTCCAAGATGCAAC ATGAATGGGGTGTCCTCAGCATATGCGACGTTGTCTGGAACCACTCCTCCTTCGACAGCCCCTGGCTGAA GGAACATCCGGAGTGTGCTTACAACGTCCAGAACTCCCCGCATCTTCGGCCGGCATTCGTTGTCGATCGC ATCTTTGCTCATTTCAATTCCGAGGTGATGGAGGGGAAGTGGGAGGCTGTTGGTATCCCCAAGATCATTG ACAATGAGGAACAGTTACATAAAATAAGACACATACTAACCCATGAAGTCTTCCCTCCATTCAAGTTACA AGAGTTTTATCAATTAGATGTGGAGAAAACTTTAGAAGAATTCAGAGAAAGATGCAAAGGTTCTAAAGAG GCCACACCACAAAAGGAGAGTAAGCCATGGGAAGTTTCCATTATTCAAGATAAAAAATACAGAAGATTAG CGAGTACTATTGACATGAACAAGGCCTTGGATAACTTCAATATACAGAGGAACGGAGTTGATGAACCTGA GGCTCGGATAGAGCAATGTTGCCAGGATCTCCGTAGCCATCTTGAACGTCTCAATGGCTTGGCTTCGAAC GTGATGGGAGAGGATATACGAAACGCCATTGAGAATCTCATCAGTAATGTCCGCTATCATCATCTAGAAC CAAGTGGTCCGAAGCTGGTCGAGGTCACCAAGAAAAATCCACTTGTAAATGAGTACTTTCGACATCCCGG ACCGGCCACCAATGTCCGAACGGAAGAAGCGTTGATGGACTCCCCTCAGGCCCCTCATCTCATGGCTTCC AACGGATGGGTTATGGGCGATGATCCTCTGAAGAACTTTGCTGAAGCTGGCTCCAAGGTATACCTAAGAA GAGAGCTCCTCAACTGGGGCGACAGCATCAAACTACGATACGGTAAAAGCCCTGAAGATTGTCCGTTTCT ATGGCAACACATGCTAGAGTACACAAAGAACGTTGTTTCTGTGTTTCACGGTGTCCGTATTGATAACTGT CACAGCACTCCCATCCATGTTGCAGAGTATTTCTTGGATGAAGGGCGTAAGATTCGGCCAGATTTGTATG TGATGGCTGAGTTGTTCACCGCATCGGAACACATTGATAACATGTTCATCAACAGGTTAGGAATATCATC TCTCATAAGAGAGGCCATGAGTGCATACGATTCACACGAAGAAGGTCGTCTGGTCTACCGATATGGAGGG GAACCTGTTGGTTCATTTCTCCAACCTGCAGTACGCCCTCTAGAGCCAAGTATAGCCCACGCCCTATTCA TGGATGTAACCCATGACAACCCGTCACCCGTTCAGGTCCGATCAGTGTATGATCTTTTACCCAGTGCTGC CCTGGTTTCAATGGCAAGCTGTGCAATAGGATCCACTCGGGGATACGATGAACTTGTGTATGAACAGATC CACGTTGTGAATGAAAAGCGATTTTACACTTCTTGGAACGAGAATCCCAAGGATAGTTCGGAGGTCAACT TTGAAAATGGTATCATCGCTGCCAAGAGGGCTTTGAATGAACTTCATCAGACCCTAGGAGATCAAGGATA TACTCAGGTGTACGTAGATCAGGTGGATGAGAACATTGTAGCTGTCACACGTCACTGCCCAATATCACAT CTTTCTGTCATCCTTGTCGCCCGGACGGCTTTCAAACATCCTCACAATGCAAAGTACACAGGCCATATAC CACCGCTGTGCATACCTGGTTCTGTGGAAGAGATCATTTTAGAGGCAAGGCTGGTGGAGCAGGAGAGGGA GAGTGCCCCGTCCTCCTCCACACACATCACCGGACTCTCAAACTATGGTGTCCAGATGCAGACCCACGTC ACACTCCTCAACAGTGAGGTGTGTGAGCTTCTGCAGCATGGTAGTCAGGCACAGGCTTCTCTTCAGGAAA TAGACTTTATCAACTTCCCACCAGGCAGTGTCATTGCTTTCAAAGTTGTCCCCCACCCGTCTGCTCGAGC AGCTCTCTCTTCCCTCCGGTCCTGCATCGCTCAGTTTGGCTACCGTGTGCGAACCCTCAGTGGTTCCAGT CCCATGGCGTCCAACAACTCCAGCTTCCATACCCTGGCACAGAAGCTCTCCCTGACGGATATGAACCATG TCCTCTACAGGTGTGATAACGAGGAAAGGGATGATGGGAAGGGGTCGGCGACCTACGACATCCCAAACTT TGGCAAGCTTGTCTACTGCGGATTGCAAGGGTTCATGTCATTGCTAGTAGATATCAGAAGTAAGAACGAC CTGGGCCATCCTATGTGTGAAAACCTGAGGCAAGGTGACTGGATGCCAGGCTATGTGGCTAACAGACTCA AGTTAAACCCTGCTACTAAACAGCTTGGTTTATGGTTTGAGAAAGCATTCACACCACTCACTCAGATCCC ACGCTACCTCATACCGTGCTATTTTGATGCCATCATGGTTGGAGCTTACACGGTCATCCTCGACTTGGCC TGGAAGAAAATGAGCTCATTTGTATTAGACGGATCCTCCTTCGTTCGATCCCTCGCTCTTGGCTCGGTAC AGATGTGTGGTATTGTGAAAACCTCTCCCCTGCCTGTCATGTCGCCGTCACTAGAGGGCGTACCGACAGG TCTGGACGAGGAGACCGGGAAGTACGTGCAGAGGGCGTCAACCATGTCGGCAGGGCTCCCTCATTTCTCC AGTGGTTTCATGCGATGCTGGGGAAGGGATACGTTCATCGCACTCCCGGGATTGCTACTCGTCACAGGAA GGGCTGATGAGGCAAAACACCTGATTCTTGCCTTTGCCGGCACCCTGCGTCATGGGCTCATCCCAAACCT CCTGGGAGGCGGGGACCACGCCCGGTTTAACTGCAGGGATGCGGTCTGGTTCTGGCTCTACTGCATCCAG CTCTATACCAAGACAGTCAAGGATGGCATCTCCATCCTGGAAGCCCCCATCTCAAGGATCTTCCCTTCGG ACGATGCCGACCCACACCCTCCTGGCTTTGTGGACCAACCACTGAGTGAAGTAATACAAGAAGCAATGCA GAGACATGCTGAGGGAGTGAGCTATAGAGAGAGGCATGCTGGGCAAGGGCTAGACAGGAATATGACAGAT CAAGGGTTCAATGTAACGCATGGTGTGGATCATAATACTGGCTTTCCGTTCGGAGGAAGTGAGTGGAATT GTGGGACATGGATGGACAAGGTTGGAGATTCTGAGCTTGGAGGCAACAGAGGGATTCCTGCTACTCCCAG GGATGGATCTCCAGTAGAGATAGTTGGTCTATGCAAGGCAGCAGTGAGGTGGCTTACGGCGCTTCATAAA GAAGGGAAATTCCCCCATGATGGGGTCACTGTGAGGATAGAAGGAAAGCAAAGTAAGTTAACGTACTGGG AGTGGGACCACAAGCTCCAGGCTAACTTTGAGAAGCATTTCTGGATAGCATCCGATGCGAGTAAGACGGC CAATAAGCTTATCAACAGACGTGGTATGTACAAGGATAGTGTTGGAGCAACACAGTTTTGGGCGGACTAT CAGCTGAGACCCAACTTCCCAATCGCGATGGTGGTGGCTCCAGAGCTTTTCACACCCAGTAATGCATGGA CGGCATTGAGTCTGCTACAGAAGGAGCTACTTGGCCCTCTAGGAATGAAAACATTGGACCCAGGTGACTG GGCATATGAAGGAGTCTATGATAATGCCTATGACGGTCCTAACAAAAAGACTGCTAGAGGTTGGAATTAC CACCAAGGACCGGAATGGGTGTGGCCGCTTGGATATTTCCTACGAGCTAAACTTCATTTCGCTCGTGTTC TTCCTGATGCTCCAGCCGATACGTTTGAAAGCACCGTGCAGTCCATCCGCAAGACCCTTATCCGTCACCA CGAGGAGATCATGGTGTCGCCATGGCGAGGGCTGCCTGAGCTGACCAATAAGAACGGGGCCCCCTGCAGA GATAGCTGCCCTACGCAGGCCTGGTCCATGGGATGTCTGCTGGAACTGATGTCAGACCTAGACCAGGCCC TAAGACAATAGACCTGGACCTACGGCAATTCTTATCAGCTGGCTTTCTGTCAGGAAATAGTATTTCCGAC TAAGAATGAGCTCCTGAGGAGTATTTCGTGAAGTATCCTTTCAGCAATTTCACTGACGAATTTTGTTCTG AGCAAATCAGATGCAAGGATTTGAGTAGCTTATAACAATTTTCAGTGAGAATCCCTGAGTATTTGTTCTT GAATTCCCCCAATCACGAGGAATGAGAAATAGTCGTGTCAGGCTCAGACTGAAACAGCCATCTTGATTTA TCATGGATGTTGATTATAATTTTGTCAACTCTCTTTGTTTGAATATATACCTTTAATACATTTAAAGTGA TAATGCTTATCCTGCCACAGGAAGTTAGGGGAACTGTGAGACGTCATCTGACCTCCAGATCCACTGTCAA CTTATATATCTAGATTGATAATTACCTAGATGTATCTACTTATTATGTTAGATCATTGATTTAACTTGCC TCCCAAATATGATACCCAATTTTTTGCATGTAGCGCGCTCATCTGTCGCCTTGCGGTCTATTCAGTCTAC TCTCTAGTACTTAACTCTTTCTATTTCACTTCTGTAAATACATGTCTGGTTAGAAAAGGTACACTGTAAA TTGTCATATGGTCTAGACCAGCTTTGTCTACTTCCATTGTCATCTCATTTCATCAAATTCTGCGGTGTGT CCCAGAAAAAAGGAATCTGGATTGCTTCACCTTTTTACATCAAAGGCAAATTAATAGTGATATTTTATTT ACATTGTCATGCAATTCAATTATTCCTCTACATTTTGATGCCTCACATGTGACGAACACTTCACGTATTA ATGAGCTACAGGAGTTTGAAATTTTGATGTCAAAATCAGGTTGCGCAGAAAATTTGAACAAGATCGGTTC GCGATACGGTGACCGTGCTTATTTGATGACTGGCTCATTAGCATTTTTTGTATTCTTTGTTAAGTTTCTC TCACTGATCCCTGAAATGTGAGTGGATTCAGATTCACACATGATTCATGGTGCAAATCGTTACTGATAGG CCTCAATATTTATTGTTTGTAATCTGCAGTGCATGAATGATTTGCTAAGCTGTTTGTCTCAGATTAAAGA TGAGTTTCCACTCTTACCATAAGTATCAAATTCACAGTAAAAACGTGTAGTAGTGGTAAAATCTAGCTCT GAAAAAGGATTTCCTTTTTTGTGGGATGCACTGTAGTCTGTCTACAACCAGTTTACTAACAATTTGTTCT GGTTGCCATTTAGTTCATTAATCATTTTGTCTAATTTCCATTTGGGTTGTACATGATTCATCTCACATCC TCTTAGTACATGTACATCTGCCTAATCTGTATGGTTAGTTCAGCAAGTACGAACCAATTTTTTCATTTGA CAAATTAAAACGCCACCATATAAGTGGATAAAATGGAAATTAGGCCATCTTGGCTCTAGATCAAATGATA ATTGGAGTAAGTGGGTTTTGAACCAAGTTTAGTGTAGACGAAAAGCAGATAGACCAAATTCATAGTAGAC CAAACCATTTTTATCCTGTGTGGTATTAGAATAGAATTGACAAGTACCGGTAAATATAAATCAACTTTGC TTTGCTCTCTAAATAAGCACTCTGCTTGGTGTAGAAACTTGGCTACTCAATGTAAAGTGATGTGAACCCC ACCAGATATTGAATATATTTATGTTCAAGTTGTGTCATATTTATAGATATTTAATTGTGAAGTCAGGTGA TAAAATATTGCATGCAATGAAGTTAGTTTCTCTGGGCTCACTGAACATTCAACACTAAAGAATAAAGGAG TGCATTTTGTGGTGGGGTTCACGAAGTGATGAGCGCATAAAAACTGTAGTTGAAAACTCTCTACTGGAGG GGCAATAGTTTATAACTGATTACTTTAATAGCGCTTCCAGTCTAAACAAATATATATATCTGATATTCCT TTAAGGTTTGTCTGTCAAATTGTTTTATGGTGCTCTTGAGTTGTAAGTGAAATTACTTATGAGATAAATT TTATGAATTATTTTCTGAAATATTGAGATTACTTTAAGCAAATCTAAATGCAGTGATATCATTTTATGAG GTTCATGCTTTGATTCAGGGTCTATTTATATTTTTCTGAAACACTCAAGAATCTTGTTCTGAAATTGATG TGTTGATTGCAAGTATTGTTTAACTTTGTGAGCAGCCGATTTAAAAAATTCTCAAACCAAGATGAAACAT GTGTACAAGTGCATGTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds