Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041616922.1 PREDICTED: Lytechinus variegatus liprin-beta-1-like (LOC121422103), transcript variant X3, mRNA TATGTGTCACAAGTTTACACTTTTGTTTGCATTCATGTTTGCTTAAGAGTATAGGTTGGTTTATTACAAT CAAAGTGCAGATACGGATCATTTCCTTTGTGCATCCACAGTAGTTTGAATGACGTGTGGGTTGTTTTAAA GCATTAAAGTGGAAGTCTTTTGTTGTGTTTGAGTGCACCGCTTTTCCACCCGCTCGTGAAAGGGCAGTTG AGTCTTGTACGCCGCCGAAGCTTCCCCGCTGAGTCGAGTTAACATTGGAATGAAAAGGTGAGATGGTCTC GGTGTGTCACATGACCAGAATCTATTTTCTGCTGTCCGTCTCAAGAGATCAAAGACATTCCATGCTCAGC ACCTGACTGGCAGTGTTATCATGACATCATTCTGACTTCCCTATCAGCCAGCATCAGTTTCTTGGGCTGT GACTCGGATTTAAACGTGGAGTGGCCAGGGGTGGGAGAGCCGTTCATCATTGAGACCATCCCATTATTGA TATCCCCTGCTTAGACCGCATCATCTACTTTACTCCCAGAACGTTAGGGGTGGGAGAGGTGGTGGCAGGG TGCACTGATACCATCAGGGAAATCGTCCGCTGCATGACATCCTTTGAGAGTTTCAAAGACTACTTTAGAA GCAAGGAGTAAGTGGACTGACTAGAATATCACGGTTAAAGTATACTGGTAATGCGACCAAGAGAACATTC AGAACTTGTTGTTGAAAGCTGAGATATTGGTGGAAAGAAGGTGTCAAGACCACACTACTCTTCGATTGAG CCAAAACCATTGGAATCCTTTAGAGATCTGGGTGAGCAAATAGAAGCCTGGGACAATCTAGGGTACATGA AGCTTCAGAATCCATTGTAATCTGTTAGAAAACCAGTGTTACCATAGCAACAAAGATGACAAATTTAGCA TCAGATGCGAGCCAGATGTTGGCTGCTGCTCTTGAACAGATGGATGATATCATAGCAGGTACCAGGCTAC AGGGTATGGACTATGATAATGGACCTGTAGTAACTAACAATCAAGTTAACATCACACATCCAAAAGAAAA CGGATCACACGCAGATGTTCCGCGACTCATTTCAGAACTACGTTTCGCGGCAGAGAGAGCGATAGAGAAC GGAGAGGAGAACCTTCTTCATGATCGTGTAGAGGATTCTACCAGGCAGTACATCGTACGTTTACTGGGGG ATAAAAAGGAGCTCGCAACAAGTCCAGGGTCTAATGAAAAGATGAAGAGATTAGAAGGAGACAAAGATAG TCTGCAACTACAGGTGAATGTCTTGACAGATCAGATTGAGGCTCAGAATGAGAAGATACAAGAACTAGAG TATGCCTGCGCAAAGAAAAGTAAAGAATTGGCTGATTCAGAGACTAAGTTACTACAGGAGTCTGAAATCC ACTGTGAATTGGAGCAAAGCCAGCAGAATTATGCAGTAGAAGCATCTAAGCTGAAAGCTAGACTAGACTC AGTAGAGAATGAAACTCTTGTTGTCAGAGAGCGTGCTATTATGGCTGAGTCTAAGATTGAAGAGCAGCAG CAAGAGATGAACAAGTTAATGTCAAAATATCAACAAAGTCAGAAAACTGTGGGGGACCTTCAATCGGAAT GTCATAAATGGCAGGAGAAATATATGGAAACACAGGTCAAGCTAGTTAGGTCACAGACAGAGACAGCAGA GCTTAAGGCTCGTCTGCGCTACAGCCATGCTCTTCTTGATGATCTCCAATCAAAGAAAGTTAAAACTCTT GATGAAGAAGTAGAGAAAGAGAAGCTAAAGATTGCTGTGGATTCTCTGATCATTGGTAACAAAGAAAAGG ATAAGACGATAGACGATTTGAATCAGAGATTATCCAAGTTTTACCATGTCCAGGAAATGGCAGCCATTAA TGGCAGAGTTGACATGGATATGCTCCTTGACATTGAAAACCAAAGAACAGACAGTTTTTCAACGTCTAGT TCAGCGACTGGAGAAACAGATACATCAAAAGATAGTCGACAGGTCCCACAAGGATCATCTCCAGTTAGTC CAGATCGAGACTTCAACCATCCCATGATGGTTGATAGAACAGAGGAGATGTTTGGCTCCAATACCAGCCG ACGATCTGCTAGTCTAGAGAATCTACAAACCAATGTCGTACCATCAACGCGTATGAAAAAGGCAAAATCA ACCATGAATGAAACTCCTTCTGACCTACCCCATCCCACTCCTGACACCAAAAACCCTGACAGACCTCTTA GTGAGGGTCCTAGAACAATACATGTCCCTATACACATCCAAGGGAATGGTACTGTACAGCCCCTCCATTC CACCCCTGACATGAAACATCCTCCAGCGGACAGTTCAACCTTCCTTACAGAAGATCCTAGAACGATCCAT GTTCCTATCCACATTGAAAGGGTATCTCCTGGGCTAGGAGATCCTTCTCTTCCAGAAGACATGAAACACC TGACCAAAGAATTGCCAGAAGTTGTCACCTCAGCATCAAACAAAACCCCTCCATTCCCGACCAATAATGA GCCAACCTGGGAATCCGTCCCAAAGAAGGTTAATTTTGATTTGGATGCTACGACCGAGATCAGTAATGAC CAGAGAAGCTCGGTTGGGGAAGACTTTGAAGATAGGGCAGGTATCGATCATGTTAGTGTTTTTCTGACAC AGGGGGCTAATAGTAATCCTTCAAATACAAATGGTCATATAGGGAATGGTGTACGTCCTAACTCTGTAGA GTCTCCAACTGACTTGACCTTCATTGACATTGACGATGCCAACGTGGCACACTTCCGTCGTGACGTTTCC CCCATTACAGGTCACATGACTCTACCTGCTCCTAAGAAAACGACGGACTCAGAGGTTGATTTAGCAGGTA GATCTAATCCCTCCGGTTACAGGACGCTGCCCTCCCCTCGTAGAAACCAAGAGTTTGATCTTCCAACCAA GCTCCAGCAGCAATCGACCAACGGTACACCAGAATCAAGAAAACCCAGAGCTTCATTTGGAAAGGGTCTC TTTAAAATCACCTCTAAAAAGACTTCCAGTGCTCCAAACCTTGCCATGACTGAGTCAGAAGGAGAAGATG CCTTAGGGGTGCAGAGACCAAGGAATGTTACCTTCCAAGGTCTAGAGAGGAGTGGATACCCCGCCCCTCC AGGGACTCCGCCTATGGACTATAGAAAACGCAAAGGCATTAAGAAACTAATCGGAAAATTAAAGCGTAGT GGGTCAGCCAATCTTCACAATGGTGATGATGATGATGATATCCACCCAGTAGAATTCTCAAGGAACAATC GTTTAAGAGCTACAGCAGGACCAAGACTAGCATGGTCTAGAGACCTAAAGAAGAATGAAAATGGGACCAA TGACTTGAACGCTCCATTTGCCAAGTGGGACAGTGAGCAGGTTTCTGATTGGCTAAGAGGGATGGGGCTC GCTCAGTATGCCGCAGCTTGTAGAGTCTGGGTGAAGAATGGTGGAACACTGCTTGCTGCTGCTCCTCTAG AACTAGAAAAGTACTTGGGTCTTAAGAATCCACTCCATCGTAAGAAGCTTCAGCTAGCCCTTCAGGCAAT GGGATCAGAGTGTGAAGACAAACAAGGAGACTTGGACTACCATTGGGTGACCAGGTGGCTAGATGATGTA GGACTACCTCAATATAAAGATACCTTCCTTGAAGCTAAGGTGGATGGTAGAATGCTACATTATATGACAG TGGATGATCTTTTGCTGTTAAAAGTAACAAGTGCCTTTCATCATGTGAGTATCATGCGGGGTATACAGTG CCTGAGATTACATAACTTCCATCCAAGCTGTCTGCGGAGGAGACCAACTGATGAGCCTTATGAAACAGGA ACCCAGGTTGCACTATGGACAAATCACAGAGTAATGGAATGGTTACGATCAGTTGATCTATCTGAATATG CTCCTAATCTGAGAGGCAGTGGGGTCCATGGTGGATTAATGGTCCTAGAACCTCGTTTCACGGCAGAAAC CTTAGCCTCCATCTTGTGTATCCCAGGGAACAAGACGTTACTACGGCGACATCTTAGTACGCACTTTATC TCTCTGATTGGTCCTGATATTCAGCAACAGAAGAGAGAAGCAGAGAAACAACCTATGTTTGTACCTCTTA ACTTCCTAGCAAAGGTCAAGCCTAAAAAGAGAACATTTGGTAAGAGCAGGCGAGGAACTGAAATGGAAGA CTACGTCTGTCCAATGGACCTTGGTCACCCCTCTAGTTTGAATGGAATGTCCCATATGAATGGCAACCGG CCTCCTCCACCCAGTTATAAAGTAGAAGTTAGGAGTGCTGACAAGGTTCACAGACAGATGGATGAGGATC AAGCAGATGGACAAGAAATGAAAGAAGGAACTGCTCAAAAGTTTGGTGCCCTATCTCAAGAAATTGATTC TTTGACGACTATGCTTTCAGATGCTGATGTGGATAGAAGTACACATGTGTGATGTCATCATGCCAACCTC TCCTCCAGGAGGGCATTGGATACAATCAACAACCTCTCATCCAGCTATTTTGCCTTTTAAAAAGTTTTTA GAAATCTGAATTTAAGTCTCACTTTTACCTAGTGAAAGTCACCTTACTAACTACTGACTGCAAGAATGCT ACTCTGTGATTTGCTGATTAAAATGTTACTTTTAATGGCAATAACATGTGAATTTAAGCTGGTTAAATGC ATTAATGCCTCTTTTTATTGATTACATTAATGTTAATTTTTATGACAAAATCTGCCTTTAAAGTGATTGA TTGAAAGTTTGTAATCTTTTGATTGGCTTTTAATGTCAGTATCACTCCATTCTGATTAATAATTGATTGC ATGAATGCTTTCTTTGATTGGTTGATTATGTTGATTCCATTGATGTCATATTTTGATAGCAATATAATAG CTTCCAAAACCACATAGACTGTATTAAGGCAACATTATTTGCAATCTTTGCTTTATCTTCACACTCAGAA TTGATGCATTCACATACAAACTTTGATAGCTTTCAAACCATGCCTTTCAGTTATTCACCTTCTTTTAAAG TTTCAGAATTGACATTTTTTACTGCATTTTGTTTTGAAAGACATCAACAATAGATTTTTCCTGTTTAGTG ATCATATAGTTATTGGGGTATTCAATAAGATACCAACCCCTATGTACATCAAACATGCCATATCTCTAAA TTTGAATTCACTTCATAAGCTACACAAGTCATGATAATTTGAGGGCATTACACCATTTCATATGAAGTAC AAACCAGAGGCATTTCACTCAGAATGATCCATCATATAGAGTGTCTTTTATTCATTGACATCAAGGAATT AACATGAAAGAGACACATTCTATGGACTTTGGACCACATTGTTTGACTCAATACAGCATTTGTAATCAGC TTTTGATTGTATGTTTATTCTTCGTTACGCACTGTTACAGGCCTGCCAACTTTTCATTTATTCCAGGAGT TGCACAGTTTTTAAGATTTTGTATTAACCAAAAAGAGGAACACACTAGATTTCCATTTATTAAAGATAAA ACTAAATCAGCCAATATATGTATTTGTATGGTAGGGTATGGGTGTAAGAGTAATATAGTTTTTCAAAACT TGTAATTTCTCAGTGCATGAATATAAGACTGGTAAACATGTCTTGATTTAAAAAGAAGTGTGGAAGACAC ACCAGACATTGAGGAGAAAATTTGGCACCTCTCAATTTGGACTCCTGTTTTTCATTTTCAAATGTTGGCG GGCCTGCTATTAAATAAAAATTATGCAATTATAAAATTGATCATAAATGTAGTGTATGGTGAATGATGTA CAATAAAGTTACAACCCATTGTAAATGTTCATTGTAACTCTTCATCTTTCCATAGACTGCAAAATGCAAT GTCAAACACGCCTCATTGAAAGAAGGAATATAAAAACCTGTGTGAAGTATATTCCCATCAACTGGTTCAA GTGCATTATTTGTTTTATACCTTGAATCATAATCCATATTGATGCTAAAAGATTAATAATAAAAAGAGAC ACATGTTCTTTGTATGCAACAAATCTTTTTATGTCTGTTATATCTCGGTTCCAATTTATTTGTATATTAT TGTTCATTTATGAGATATCAAGTTCTTCCAATTTATGTGATGATTATGAAAACAATGCATATTTCAAGTG AATTTTTATGATTCAAATTATTTCATGGAGCTGTCTGTTATGTCCATTAGAGTTTTATCATCCAATGGTA AATACCTTGGTAATGATGACAGCCAATCAAAATCAAGATTTCACAAATTAATAAATGAATAATGATTGCT CATAAGGGATTTGTAAATACTGCTGCTCCAAAGAGACTTATGAGGCATACTGCTTTACCCTGAGACCAAA CAAAAGTTGGCTTCTAGTCTAAAGATCATTGTGGGGTAACAATTTTACTATTGCCTGAATAAGAGAACAG TCAATATTATAAACCAATCATTTATTTGAGCAGGGCAATAGTAAACTATTACCTTGTGCAATCAAACCAA TTAGTAATTATATACAACAGAGTCTTTAGGGCATCCAGTGGTCCTCCCATCTTATATACTTAGCTGATCC TTCATTAGCCTGTGTGAGAATGTTTACTGAGTAAGCATCAAAATACTGGAATGATTGGCCACTTTATACA ATCCAACAGTCATCATCAGTAATTATAAGTATTGAATACCCATCTTTCAGTTCAATGATCTGTAAATGTC TGTCTAAACTACATATATTGCCTTGTAAGACCCATGAATTCCCTTTGTTTGTTTGTATTACATAATTTTC TTGTATATGAAATGCAGAAAACTTTGGCTTAGTAGAATCTCTTGTGGTCACAGAAACCTGTTTGACTACA TGTAGAGGAATTTGACATAGAAGAGGTAAACATTGTGTCCCACAAAAAAGATACCCATTTTCAGAAAAGG ATTTCACAATAATCAATATGTTTTTGTAATAAATTTGGCACTTATACTGAGAGTGGAATCTCTTCTTTAA TTTAAGACAAAAAAACTTAGGAAATCATTCATTCATGGAATTTTAAAACAATAAACAATTAGGCATATCA GAAATGATTTGCACAGAATTTCACATGTAAGGTCATTGAGAGGAGCTTAACAAAGAATACAAAAGAAATG CTAATGAGCCAATAGTCAATTAAGCAATGTTATATGTTTAATCAATCTTTGCCAATTTGGTTTTGCAACT TAATTTTTACATTGAAACTCATCTTGCTCATTAATAGGCGAGGTATTCCTCTCATGTTAGGTATCAAACT ATGGAAGAATAACTAGTTTATGAGGTTGTAAATGAAATCATCTTAATTCATTTTTCTTTAAAGAAACAAG ACATGGGAATCCTGGTTTCCTTTTTCTAGGACACACTGTATAACACTTTTTTTGCATAATGTGGTCTAAC ATGCTTTGATTTGGACCAATATTAGACTTACTGTATGAATGGCTGACTAATGCAAGTTACCTCTTTATTA TATTTTTTGCAGTATTATGCCTCCATTTATGATCACAATTCAGACTTTTATCAACTTAGTTTCAGCCTTT GAAAACAAAGTTTTGGTTTACAAAATTGCTCATTGTAGATGACTTTCAGACTGTTTTAAAAAAATTATTC ACAGTGGCATTCCTAAATATTTGATTTCATGGAAATACAGATTTTACCCCTATCATCGTTGCTAAAGATA TCAGGGTCATACCACTCAATAGTTTGATATAAAAAATAGATGAACAAACAAAAGGAATTAATATTTTTAT TTGAATGAATTCAGCTGTAATTATGACCTCTATAAAAATTCATGCTCATAATAAAACAAAAATGAGAGGA ATTGAAATTATTATGTAGTCCTTTATCCCCATTGCTGCCCACAATGTACCAGTGTAGTAAAATGCCTTTA TTTTTTTTTTACTTGGAAAAAAATATTGATGAAATTCCCCTTTTAATTAAGTTGACATTCCAACCCTTTG CCCATATGTATTAATCGTGTGCATTGCTGTGACAAAGAGCGCTGGGCTGGAGACTTCTCATTTAGTCTGA CCTTTTACAGTGGGTAACTGAAAATGCATGGGTGCAGTGATTTTACAGTGGGGTTTTGGTTCACTGGACA TTGTGAATTATTTGTACTTGAACAAGATTTATGATAAAATTCATTTGATAAAAACCACATCCATTTTTTA AACAAACTCATTGTAAACACCCAATGTTTGTCCCTCTCACCTTCTTACTTTTCCTTTCACTTTTGTTTTC TCCTTTTGCCCGTTTTCTCACCTTTCTCTTTATCTCTATCACTTCTCCCATTAAATTTTTCTTTTTTATT TTCCTCTCCATTTGCCTCTCACCTCTCTATGATATCCCTCCCTCTCTGTCTCCCACC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds