Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041616923.1 PREDICTED: Lytechinus variegatus liprin-beta-1-like (LOC121422103), transcript variant X4, mRNA GTATGTGTCACAAGTTTACACTTTTGTTTGCATTCATGTTTGCTTAAGAGTATAGGTTGGTTTATTACAA TCAAAGTGCAGATACGGATCATTTCCTTTGTGCATCCACAGTAGTTTGAATGACGTGTGGGTTGTTTTAA AGCATTAAAGTGGAAGTCTTTTGTTGTGTTTGAGTGCACCGCTTTTCCACCCGCTCGTGAAAGGGCAGTT GAGTCTTGTACGCCGCCGAAGCTTCCCCGCTGAGTCGAGTTAACATTGGAATGAAAAGGTGAGATGGTCT CGGTGTGTCACATGACCAGAATCTATTTTCTGCTGTCCGTCTCAAGAGATCAAAGACATTCCATGCTCAG CACCTGACTGGCAGTGTTATCATGACATCATTCTGACTTCCCTATCAGCCAGCATCAGTTTCTTGGGCTG TGACTCGGATTTAAACGTGGAGTGGCCAGGGGTGGGAGAGCCGTTCATCATTGAGACCATCCCATTATTG ATATCCCCTGCTTAGACCGCATCATCTACTTTACTCCCAGAACGTTAGGGGTGGGAGAGGTGGTGGCAGG GTGCACTGATACCATCAGGGAAATCGTCCGCTGCATGACATCCTTTGAGAGTTTCAAAGACTACTTTAGA AGCAAGGAGTAAGTGGACTGACTAGAATATCACGGTTAAAGTATACTGGTAATGCGACCAAGAGAACATT CAGAACTTGTTGTTGAAAGCTGAGATATTGGTGGAAAGAAGGTGTCAAGACCACACTACTCTTCGATTGA GCCAAAACCATTGGAATCCTTTAGAGATCTGGGTGAGCAAATAGAAGCCTGGGACAATCTAGGGTACATG AAGCTTCAGAATCCATTGTAATCTGTTAGAAAACCAGTGTTACCATAGCAACAAAGATGACAAATTTAGC ATCAGATGCGAGCCAGATGTTGGCTGCTGCTCTTGAACAGATGGATGATATCATAGCAGGTACCAGGCTA CAGGGTATGGACTATGATAATGGACCTGTAGTAACTAACAATCAAGTTAACATCACACATCCAAAAGAAA ACGGATCACACGCAGATGTTCCGCGACTCATTTCAGAACTACGTTTCGCGGCAGAGAGAGCGATAGAGAA CGGAGAGGAGAACCTTCTTCATGATCGTGTAGAGGATTCTACCAGGCAGTACATCGTACGTTTACTGGGG GATAAAAAGGAGCTCGCAACAAGTCCAGGGTCTAATGAAAAGATGAAGAGATTAGAAGGAGACAAAGATA GTCTGCAACTACAGGTGAATGTCTTGACAGATCAGATTGAGGCTCAGAATGAGAAGATACAAGAACTAGA GTATGCCTGCGCAAAGAAAAGTAAAGAATTGGCTGATTCAGAGACTAAGTTACTACAGGAGTCTGAAATC CACTGTGAATTGGAGCAAAGCCAGCAGAATTATGCAGTAGAAGCATCTAAGCTGAAAGCTAGACTAGACT CAGTAGAGAATGAAACTCTTGTTGTCAGAGAGCGTGCTATTATGGCTGAGTCTAAGATTGAAGAGCAGCA GCAAGAGATGAACAAGTTAATGTCAAAATATCAACAAAGTCAGAAAACTGTGGGGGACCTTCAATCGGAA TGTCATAAATGGCAGGAGAAATATATGGAAACACAGGCTCTTCTTGATGATCTCCAATCAAAGAAAGTTA AAACTCTTGATGAAGAAGTAGAGAAAGAGAAGCTAAAGATTGCTGTGGATTCTCTGATCATTGGTAACAA AGAAAAGGATAAGACGATAGACGATTTGAATCAGAGATTATCCAAGTTTTACCATGTCCAGGAAATGGCA GCCATTAATGGCAGAGTTGACATGGATATGCTCCTTGACATTGAAAACCAAAGAACAGACAGTTTTTCAA CGTCTAGTTCAGCGACTGGAGAAACAGATACATCAAAAGATAGTCGACAGGTCCCACAAGGATCATCTCC AGTTAGTCCAGATCGAGACTTCAACCATCCCATGATGGTTGATAGAACAGAGGAGATGTTTGGCTCCAAT ACCAGCCGACGATCTGCTAGTCTAGAGAATCTACAAACCAATGTCGTACCATCAACGCGTATGAAAAAGG CAAAATCAACCATGAATGAAACTCCTTCTGACCTACCCCATCCCACTCCTGACACCAAAAACCCTGACAG ACCTCTTAGTGAGGGTCCTAGAACAATACATGTCCCTATACACATCCAAGGGAATGGTACTGTACAGCCC CTCCATTCCACCCCTGACATGAAACATCCTCCAGCGGACAGTTCAACCTTCCTTACAGAAGATCCTAGAA CGATCCATGTTCCTATCCACATTGAAAGGGTATCTCCTGGGCTAGGAGATCCTTCTCTTCCAGAAGACAT GAAACACCTGACCAAAGAATTGCCAGAAGTTGTCACCTCAGCATCAAACAAAACCCCTCCATTCCCGACC AATAATGAGCCAACCTGGGAATCCGTCCCAAAGAAGGTTAATTTTGATTTGGATGCTACGACCGAGATCA GTAATGACCAGAGAAGCTCGGTTGGGGAAGACTTTGAAGATAGGGCAGGTATCGATCATGTTAGTGTTTT TCTGACACAGGGGGCTAATAGTAATCCTTCAAATACAAATGGTCATATAGGGAATGGTGTACGTCCTAAC TCTGTAGAGTCTCCAACTGACTTGACCTTCATTGACATTGACGATGCCAACGTGGCACACTTCCGTCGTG ACGTTTCCCCCATTACAGGTCACATGACTCTACCTGCTCCTAAGAAAACGACGGACTCAGAGGTTGATTT AGCAGGTAGATCTAATCCCTCCGGTTACAGGACGCTGCCCTCCCCTCGTAGAAACCAAGAGTTTGATCTT CCAACCAAGCTCCAGCAGCAATCGACCAACGGTACACCAGAATCAAGAAAACCCAGAGCTTCATTTGGAA AGGGTCTCTTTAAAATCACCTCTAAAAAGACTTCCAGTGCTCCAAACCTTGCCATGACTGAGTCAGAAGG AGAAGATGCCTTAGGGGTGCAGAGACCAAGGAATGTTACCTTCCAAGGTCTAGAGAGGAGTGGATACCCC GCCCCTCCAGGGACTCCGCCTATGGACTATAGAAAACGCAAAGGCATTAAGAAACTAATCGGAAAATTAA AGCGTAGTGGGTCAGCCAATCTTCACAATGGTGATGATGATGATGATATCCACCCAGTAGAATTCTCAAG GAACAATCGTTTAAGAGCTACAGCAGGACCAAGACTAGCATGGTCTAGAGACCTAAAGAAGAATGAAAAT GGGACCAATGACTTGAACGCTCCATTTGCCAAGTGGGACAGTGAGCAGGTTTCTGATTGGCTAAGAGGGA TGGGGCTCGCTCAGTATGCCGCAGCTTGTAGAGTCTGGGTGAAGAATGGTGGAACACTGCTTGCTGCTGC TCCTCTAGAACTAGAAAAGTACTTGGGTCTTAAGAATCCACTCCATCGTAAGAAGCTTCAGCTAGCCCTT CAGGCAATGGGATCAGAGTGTGAAGACAAACAAGGAGACTTGGACTACCATTGGGTGACCAGGTGGCTAG ATGATGTAGGACTACCTCAATATAAAGATACCTTCCTTGAAGCTAAGGTGGATGGTAGAATGCTACATTA TATGACAGTGGATGATCTTTTGCTGTTAAAAGTAACAAGTGCCTTTCATCATGTGAGTATCATGCGGGGT ATACAGTGCCTGAGATTACATAACTTCCATCCAAGCTGTCTGCGGAGGAGACCAACTGATGAGCCGTGGT ATAAAAACCTTAAAAACATGCCTCCTTGGAGTAACGAGATGCCTTATGAAACAGGAACCCAGGTTGCACT ATGGACAAATCACAGAGTAATGGAATGGTTACGATCAGTTGATCTATCTGAATATGCTCCTAATCTGAGA GGCAGTGGGGTCCATGGTGGATTAATGGTCCTAGAACCTCGTTTCACGGCAGAAACCTTAGCCTCCATCT TGTGTATCCCAGGGAACAAGACGTTACTACGGCGACATCTTAGTACGCACTTTATCTCTCTGATTGGTCC TGATATTCAGCAACAGAAGAGAGAAGCAGAGAAACAACCTATGTTTGTACCTCTTAACTTCCTAGCAAAG GTCAAGCCTAAAAAGAGAACATTTGGTAAGAGCAGGCGAGGAACTGAAATGGAAGACTACGTCTGTCCAA TGGACCTTGGTCACCCCTCTAGTTTGAATGGAATGTCCCATATGAATGGCAACCGGCCTCCTCCACCCAG TTATAAAGTAGAAGTTAGGAGTGCTGACAAGGTTCACAGACAGATGGATGAGGATCAAGCAGATGGACAA GAAATGAAAGAAGGAACTGCTCAAAAGTTTGGTGCCCTATCTCAAGAAATTGATTCTTTGACGACTATGC TTTCAGATGCTGATGTGGATAGAAGTACACATGTGTGATGTCATCATGCCAACCTCTCCTCCAGGAGGGC ATTGGATACAATCAACAACCTCTCATCCAGCTATTTTGCCTTTTAAAAAGTTTTTAGAAATCTGAATTTA AGTCTCACTTTTACCTAGTGAAAGTCACCTTACTAACTACTGACTGCAAGAATGCTACTCTGTGATTTGC TGATTAAAATGTTACTTTTAATGGCAATAACATGTGAATTTAAGCTGGTTAAATGCATTAATGCCTCTTT TTATTGATTACATTAATGTTAATTTTTATGACAAAATCTGCCTTTAAAGTGATTGATTGAAAGTTTGTAA TCTTTTGATTGGCTTTTAATGTCAGTATCACTCCATTCTGATTAATAATTGATTGCATGAATGCTTTCTT TGATTGGTTGATTATGTTGATTCCATTGATGTCATATTTTGATAGCAATATAATAGCTTCCAAAACCACA TAGACTGTATTAAGGCAACATTATTTGCAATCTTTGCTTTATCTTCACACTCAGAATTGATGCATTCACA TACAAACTTTGATAGCTTTCAAACCATGCCTTTCAGTTATTCACCTTCTTTTAAAGTTTCAGAATTGACA TTTTTTACTGCATTTTGTTTTGAAAGACATCAACAATAGATTTTTCCTGTTTAGTGATCATATAGTTATT GGGGTATTCAATAAGATACCAACCCCTATGTACATCAAACATGCCATATCTCTAAATTTGAATTCACTTC ATAAGCTACACAAGTCATGATAATTTGAGGGCATTACACCATTTCATATGAAGTACAAACCAGAGGCATT TCACTCAGAATGATCCATCATATAGAGTGTCTTTTATTCATTGACATCAAGGAATTAACATGAAAGAGAC ACATTCTATGGACTTTGGACCACATTGTTTGACTCAATACAGCATTTGTAATCAGCTTTTGATTGTATGT TTATTCTTCGTTACGCACTGTTACAGGCCTGCCAACTTTTCATTTATTCCAGGAGTTGCACAGTTTTTAA GATTTTGTATTAACCAAAAAGAGGAACACACTAGATTTCCATTTATTAAAGATAAAACTAAATCAGCCAA TATATGTATTTGTATGGTAGGGTATGGGTGTAAGAGTAATATAGTTTTTCAAAACTTGTAATTTCTCAGT GCATGAATATAAGACTGGTAAACATGTCTTGATTTAAAAAGAAGTGTGGAAGACACACCAGACATTGAGG AGAAAATTTGGCACCTCTCAATTTGGACTCCTGTTTTTCATTTTCAAATGTTGGCGGGCCTGCTATTAAA TAAAAATTATGCAATTATAAAATTGATCATAAATGTAGTGTATGGTGAATGATGTACAATAAAGTTACAA CCCATTGTAAATGTTCATTGTAACTCTTCATCTTTCCATAGACTGCAAAATGCAATGTCAAACACGCCTC ATTGAAAGAAGGAATATAAAAACCTGTGTGAAGTATATTCCCATCAACTGGTTCAAGTGCATTATTTGTT TTATACCTTGAATCATAATCCATATTGATGCTAAAAGATTAATAATAAAAAGAGACACATGTTCTTTGTA TGCAACAAATCTTTTTATGTCTGTTATATCTCGGTTCCAATTTATTTGTATATTATTGTTCATTTATGAG ATATCAAGTTCTTCCAATTTATGTGATGATTATGAAAACAATGCATATTTCAAGTGAATTTTTATGATTC AAATTATTTCATGGAGCTGTCTGTTATGTCCATTAGAGTTTTATCATCCAATGGTAAATACCTTGGTAAT GATGACAGCCAATCAAAATCAAGATTTCACAAATTAATAAATGAATAATGATTGCTCATAAGGGATTTGT AAATACTGCTGCTCCAAAGAGACTTATGAGGCATACTGCTTTACCCTGAGACCAAACAAAAGTTGGCTTC TAGTCTAAAGATCATTGTGGGGTAACAATTTTACTATTGCCTGAATAAGAGAACAGTCAATATTATAAAC CAATCATTTATTTGAGCAGGGCAATAGTAAACTATTACCTTGTGCAATCAAACCAATTAGTAATTATATA CAACAGAGTCTTTAGGGCATCCAGTGGTCCTCCCATCTTATATACTTAGCTGATCCTTCATTAGCCTGTG TGAGAATGTTTACTGAGTAAGCATCAAAATACTGGAATGATTGGCCACTTTATACAATCCAACAGTCATC ATCAGTAATTATAAGTATTGAATACCCATCTTTCAGTTCAATGATCTGTAAATGTCTGTCTAAACTACAT ATATTGCCTTGTAAGACCCATGAATTCCCTTTGTTTGTTTGTATTACATAATTTTCTTGTATATGAAATG CAGAAAACTTTGGCTTAGTAGAATCTCTTGTGGTCACAGAAACCTGTTTGACTACATGTAGAGGAATTTG ACATAGAAGAGGTAAACATTGTGTCCCACAAAAAAGATACCCATTTTCAGAAAAGGATTTCACAATAATC AATATGTTTTTGTAATAAATTTGGCACTTATACTGAGAGTGGAATCTCTTCTTTAATTTAAGACAAAAAA ACTTAGGAAATCATTCATTCATGGAATTTTAAAACAATAAACAATTAGGCATATCAGAAATGATTTGCAC AGAATTTCACATGTAAGGTCATTGAGAGGAGCTTAACAAAGAATACAAAAGAAATGCTAATGAGCCAATA GTCAATTAAGCAATGTTATATGTTTAATCAATCTTTGCCAATTTGGTTTTGCAACTTAATTTTTACATTG AAACTCATCTTGCTCATTAATAGGCGAGGTATTCCTCTCATGTTAGGTATCAAACTATGGAAGAATAACT AGTTTATGAGGTTGTAAATGAAATCATCTTAATTCATTTTTCTTTAAAGAAACAAGACATGGGAATCCTG GTTTCCTTTTTCTAGGACACACTGTATAACACTTTTTTTGCATAATGTGGTCTAACATGCTTTGATTTGG ACCAATATTAGACTTACTGTATGAATGGCTGACTAATGCAAGTTACCTCTTTATTATATTTTTTGCAGTA TTATGCCTCCATTTATGATCACAATTCAGACTTTTATCAACTTAGTTTCAGCCTTTGAAAACAAAGTTTT GGTTTACAAAATTGCTCATTGTAGATGACTTTCAGACTGTTTTAAAAAAATTATTCACAGTGGCATTCCT AAATATTTGATTTCATGGAAATACAGATTTTACCCCTATCATCGTTGCTAAAGATATCAGGGTCATACCA CTCAATAGTTTGATATAAAAAATAGATGAACAAACAAAAGGAATTAATATTTTTATTTGAATGAATTCAG CTGTAATTATGACCTCTATAAAAATTCATGCTCATAATAAAACAAAAATGAGAGGAATTGAAATTATTAT GTAGTCCTTTATCCCCATTGCTGCCCACAATGTACCAGTGTAGTAAAATGCCTTTATTTTTTTTTTACTT GGAAAAAAATATTGATGAAATTCCCCTTTTAATTAAGTTGACATTCCAACCCTTTGCCCATATGTATTAA TCGTGTGCATTGCTGTGACAAAGAGCGCTGGGCTGGAGACTTCTCATTTAGTCTGACCTTTTACAGTGGG TAACTGAAAATGCATGGGTGCAGTGATTTTACAGTGGGGTTTTGGTTCACTGGACATTGTGAATTATTTG TACTTGAACAAGATTTATGATAAAATTCATTTGATAAAAACCACATCCATTTTTTAAACAAACTCATTGT AAACACCCAATGTTTGTCCCTCTCACCTTCTTACTTTTCCTTTCACTTTTGTTTTCTCCTTTTGCCCGTT TTCTCACCTTTCTCTTTATCTCTATCACTTCTCCCATTAAATTTTTCTTTTTTATTTTCCTCTCCATTTG CCTCTCACCTCTCTATGATATCCCTCCCTCTCTGTCTCCCACC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds