Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041613106.1 PREDICTED: Lytechinus variegatus uncharacterized protein C19orf47 homolog (LOC121418910), transcript variant X2, mRNA TGATATCGGTGGCTGTAGCTCGAGATCGAGAGATACCATCCAGAACCGAGAGGCGAGAAGCCACCGAATT TAACTGCGAACGGTCGCGAAATGGCAGCGAATATGGAAATGTCTGAGTGGATTAAGTTCTTCACTGCTGC TGGTATCCCGGCTGGCCCAGCTGCAAAGTATTCTGTGGTTTTCCTTGACAATCGCATCCAGAAGAGCATG CTGATGGATCTCACCAAGGAGTACTTGAAGGAAATGGGTATTTCAATCATGGGAGATGTGATTGCTATTC TCAAATATGCCAAGACAGCTCATATGAAGTATGAAAATGAGAAACCTGCCATAACAGCCTTGTCCATTAA CCCAGATGCTAAAGTGGAAGTGAAGAGACAGACTACAGCTGGAAACAGAATGCTTGAGCACTACATGAGG AAGGAAGGCATAATGGAGGGAGGCACTTCAAAGGTCACAGTATCACCTTCCATGGCTGTCAGACTTGGAG CTGTACCAGTTGGAGGTACCAAGAAGGCATCCTCTGGGATTTTAGCAGACACTGCAGAGGTGATTCCAGT GAAAAGACCACGTATGGTGAAGCCAGAGGAGGAAGGGAAGTATTTGATCAGCTTACCTAAAGGAACCACA CCCAAAACAATGAAGATCATGGAGCAGAAGCAACAGCAACAGAAAACATCTGGAGAAGACCAGAAATCAT CAGTCTTTGCTCGTCTAGGATCAGGATCTAGCCCAGCTCCTCAGCCGAAGAATGTAGAAGTATCACCAGC AAAGACTCCTGGAGGATCATCCGTGTTTAATCGTTTAGGTGGCCAGCGTAAAAGATCTGTCTCAGAATCA GAACCAGTTGAATATCAAGGTGTGCTGAAATCACTTTCCTCTCCATCCCTTGCGACAACACCTAGTACTA CCACCATCAAAATCACAAAACCTACACCAGTGGCAAAACCAGCGTCAGTGAAAGTTACCTTGGGTTCTTC TAAGTTGGTTTCTGCAATGCCAGAAGCAAGTCTGCAGACAAGGTTAGGGAAAAAGTCTGTGGTGGCAACG CGCGTGACCACTCCTCCTGCTGGTGCAAAGAATGTCATGGCAAGACTTGGTGCACCAACCGGAAAACCTA AAGTAGTGGAGACCCCTACTCCCAGTACTAAACCAAAGGTGACTGTAACTCTTGGAGGAAAGAAGGTGGC AACCAAAAGGTCAGCTATGGATCGCCTTGGTGTACAGAAACCAGAGATATCTACAACCACTCACATGGAT TCTTTTGGGGTGAAATCAAAGGTACAGGATCGCCTGGGAGGAGCAGACACAGTGACAAGGACAATGGCAA AAGGGACTGTCAAATTGGCTTCAGCAAAACCTGTAGTGAAGAAATCAATGCAGGCCAGACTTGGTGCACC GACCGATGCCTCAAGAGTCAGCAGCGTTAGGAGAGAACCTGTTGTGAAACAAAGTGTGACAGTAACCTTG GGCGGGAAGCCAACTGCCATGCAGAAACGGCTTGGTAAGACAGTACTAGGAGCATCCAAGAGTGTAGCTT CCCCTGTCTCGTCCAGCTCAAAGGTAATGAAGAGACTTGGTGCTCCTGTAGGGTCACAGAAGAAATCAGC CATGAAGGATAGGTTAGGTCTGATGAAAGCAGAGGCTTCATCCACTACACCAAGCATCACTGTTACAATG GGTGGGCTAGGATCCATGAAGAATAAGACTGCTAGTGCTATGTCAAAAAACGTATTCAGTCGATTGGGAA AATCATGAGCTCTTTCAACCATCTTGTTTGATTTTTATAGAGAAGTCTATCTAATTACAAAAAACAGAAA CTTGATCAAATGTGTCTGACTTGATGCTAAATAGCTTAGTTTTGAGTAGACAAAAGTCGCTGAAATAAAA GATTGCTGTGAATATTACTATTTATGAAAATCTTATATTTCTCAACCTTCCCTATCATAGTGGTTGTCTT TGGCTGTGTACCATAGAACTTGTGGCTGTATTTCTGTAGAGTTCTGATATATCTTTTCTGTATTTTATTT CCTAGTACTAGTAATATGCATATATTCTTGCTAATACTTCTATTTTATAGCTCTATGAAAATAATGAAAT GATAAGATCTAGACTGTAAAATTTGAAGTCGAAATTAATTGTTACCTAGCTTTACAGTTTCGGATGTTGC AAAACTCAAAGAGAGCTAGCAAGTATATTCTTACTACTGCAAATTGTTGAAGCTCTCCTGTGATACCACA GACTGCAAGGCTTTGTGAAAAGTTTTTATAACTTTGAATTTTACAGTCTAAAACATAGATATTTCATAGG TCTAGATAACAGAGGTATTTTGGAAGAGAAGGGCAAATGAAAGATGTAGCTGAAACAAAAATAGTAAAAA TATGTGAATATCTGGGATTCTGGTCAGAAAATCAGACCTACAGTCACACTTTTTATGGGGAAGACAGAGA AATACTTTTTCTATTTGATTCTTCAGAATAGACGTTCTTTTCTAATATTTGAGAGCCTTTGTTGATATGG ATGTATGGATGACTTCAGTTAGTATGGCTGCATATTTTCTAAAAAAATATTTTGAAAATCTGGAAATCAA GAAAGCTTTGCACAGCTCATGTGAAATGTCAGACACTTCTTTGAAATAACATGGAATTCTCCTTGCATCA TTGTGAAGATCAAATAGTTTAAAAAAGATAACCCAATATTGTATAGTTTTGTGGGAGGTTTTGGTTTTAA AAAAATTAAAATATATTTTTGATTTGATTTTTTGAATATTTTTCTGACCTGCTGCATTTTGGAGGTCATA ATTCAAAGAATGATTTACCTACAAAATACAAGATTATTCAATAGAAAATTGTACTTAACATTTATAATGA ACTTATGCTTTGAAGGGCCAAAGTTGATTAAAGATGTGATTCTGAGCATTTTACAGTTAGTGCTTGAATT TTTACTTTGACTTTATCTAGTACAAGATATTGATAATTATACATACTGTTAATATGTCAATATAATTTTG TACATTCTTGAATCTTGCATCTTGAATTTAAATATTGGAATTGTTTGCAGCCATTAGACTTATTAAAGTC TGGTGTGTAACGCTTTTAGGAGACTGATCAAAGTTGCTAGTTGATCATGAACTGTAAATAGGCATCCTTG ATCATCCATAGATGATCTGGGTTTCCTGGGATTTCTCAAACTATTAAGACTTTATTTGTATTGATGATGT TTGCCTTTTATTTTTTCTTATTCTTTTAAAATTAGTTTGCTTTTATTTTGTAATTCATTATTTTTATTTG CTTTGTGTTTTTTGTAGACAATTTGATGCATACTCATCAGGAAACTTTTATCATGTTTTATTATTTAAAC CCCAAATTGGTTTGAAGCCTATACTTTTTTAAAGTATTAGATGGACAAACAAATCGATAAGATTAACATC ATGAATACCTGAAGATGCAAAGATCAAGCTATGAAAGAATAAAAAAAGACTTGAGTTAAGAGTTTTTAAA ATACGGTAATGAAGAAAAATAATTTCATAAAACTTTTTGTCTTTTGATGATACAATTTCTATCTACAAAA TTTGTCAACATACTTTCTGTCCTTATTTTCCTTTTAAATAAATGGAATACAACTAAGTAATTTTATATTT TTAAGATAAAGTAAGCTACAAAAAAGCATTTTATCAGACTCGCCCTGTAAAAATCACTTTTCTCGAACTA CCTATTTTGTACATTGGAAAGATAATTTTATTTAAGCATTGTAAACTTGCAATACGTATACAGTTGTGCT CATAAGTTAGTGAACCCTACCACAAAATGAACTCCTTCATGCCGAGTGTTGAATGTAGACAACAGCACTA CAATTATCGATGAGCCTGGAGACACAAACTTTATTGAATGTAACATTTTGTCACCAGACTTTACTATTAA ATATCTATAACAGGGCAGAACTTGAACACTTTAAATACATTAATATTTTGGCGAGGTTCACCAACTTTTG AGCACCACTGTATGTGCATTTTGCATATAGTTTGATTTAATTTTACCAATTTTTATGACCAATTTGAATT ATGCTGAACAGCATGTTGACCTGCGTTCATATAAGAGGTTGAAATCATTGATAGGGGATTGACTGTTAAG TGTTGACACCCTCTTTTGTTCTTGAAGAGCACCAAGATATGCATTAACAAGCAGACATTGCCCACACACA TGCTTCAATATTTAAAGAAAATAACTAAATTGGATTTAGTGTGTGCACAGGCATAAAAACTTTTAAAAAG GAGATGGTTTAAACTTCTTTTGAGGAGATAGATCACTAAATGTTTAAGGTCAGAAATTTCCTTCATTATT TGCTATGAATTTTGCCTCTTAGAGATTCATTGACATTTTATTTATTCTTGAGAGAAATATTCCATGATGA AGTAGTTTTCTTAATGCTTAACATGTCATACATGTAGTTACCAATTGGCAAGCAATTTCTTCGGTATTTT AAGTTACATTAAAATACATGAGAAACACCCAAGGAACAAAATTGCACTTTAATATTGCTTTTCTCTTTTG ACCGTACTGGACTAGAATATCAGAGTGTTTATTAAGTCCAACAATGGTGTCTTCGAATAATGAAAATAAA TTATGGCATAGTTGACTAGTTTTTGTTAGATGAGTTATGTTTTTTTCTACTCATGAAAACAGTTTCATAA TACACTTATTTCATCAAGCATATACATCTGACCCCCTTGTTTATGGGATTTTTCTCCTGAAATGTTTTGT CTCAAGTTTTCTAATTTACATGAAAAATTGTAAAGCGATCAATTATCACGGCTTGAGCAGTTCATTAAGA TAAATGAAATTCGGGGGTTGGACTTACTAAATTTTTATTTTTATAAAGAGTTGCCCCAATTCCAATGTTA TTGACTGATGTGGGTAAACGATCAATTCATGTTCATATTTATTTGAAAGTAGAAAATGGAAATTCAGTTT CGGCGCATTCAGTGAAGCAAAGAGAATCAAATAAAGAACCACTTTGCCTCTGAAAGAAGTAACTGATTTA TTTTCTTTTCTTCAAGTGTCTGAATAAAATGAATATTCAATCAAATACATGTATGTTCAAGTTTAATGAT AAGGAACACAACTCATATAACTGCCAAATCAACAGTGTACTTAAAGATGTTTTTTTATTGGTTTATACAT TGCACAATAAAATATTTCACTTGGGTAATGTTAAATGTATCTTTAACCCTCCACCATAAACTTATAGAGT CACCAAAATCACTTATATAATTTGTGAATTTTGTTGGAAAGAGAAGAATAATATCCTTAAAATGATATAT TTACCTGTCATTGTGAAGAAAAGTCCTTTCAAAAATTTCAGTAGTGAATGTGAGAGTCAAACATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds