Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041608518.1 PREDICTED: Lytechinus variegatus phosphatidylinositol 3-kinase catalytic subunit type 3-like (LOC121415340), mRNA TGGGTTCGTCGACGTCCTAGGCCTATGAATTCCCTTCTCGATGCTGCCACAGATCGAGTGATGTTTTGAG CTGGGATTCCCATACATCTGGTCCAAAAATGGCTGAAAGCGAGGATAAGTTCTATTATGTGTACAGCTGC GATTTAAGTGCAAATGTTCAGATTAAAATTGGAACACTAGAGGGAAAGAGAGAGAGGCCAAGTTACAGGG ATTTACTGGCAGATCCTCAGTTGAGATTCTCTGGTCTCTATGAAGAAAAGTGTGCTGACCTTTATGTGAC CTGTCGAGTCTTTGCCGATGGGAAACCTTTGACCTTGCCCAGAAGAACATCATACAGGGCATTTACTACC AGATGGAACTGGAATGAATGGCTGATCCTTCCACTAAAGTTCAGTGACCTCCCAAGAAATGCCCAGGCTG CTTTCACCATCTGGGATGTGTATGGACCAGATGATGCACGGCCGGTAGGAGGGACCACTGTCAGTCTCTT TGGCAAACATGGCACATTCCGCAATGGCATGCAGGACCTGAAGGTATGGCCGGGGGTCGAGGGCGATGGT CGGGGTCAAAGCAAGACACCCGGTAAGCTGGCCGATAGCAATGACACCATGGCACGGCTGGCCAAACTGA CCAAGAAACATCGTAAAGGTCACATGCTGAAGGTGGATTGGTTGGATAGACTGACCTTCAGGGAGATTGA AATGATCAATGAAAAAGAGAAGAGAGACTCAAACTTCATGTATCTAATGGTGGAATTTCCTAGGATTCAT TACAATGATATTGAGTTTGCTGTTGTGTATTATGAGAAGGACGCAGAGGAGACGATATGCACTAGAAACT ATGCAGAGATAGTCTCTGTTCCAGATCCTGAGATGTTAATGGAAAACCTTGTTGAGAGTAAGCACCATAC CTTGGCTAGAAGTGAAAGGAGTGGATTATCAGACAGAGATCTCAAACCAAATGCTTCCACCAGAGACCAG CTCAATAACATAGTCGGCTATGGTCCCACCAAGCCGTTAACCTACGAGGAGCAGGATGTGGTGTGGAGGT TCAGATACTATCTCAACAGCCAGGGGAACGCCCTTACCAAGTTCCTTCGCTGTGTCAAGTGGGACGTTCC CCATGAGGAGAAGCAAGCCTTGGAGTTGCTTCAGAGCTGGGCTCCTATCGATGTTGCCGACGCGCTGGAG CTTCTCTCGCCTCAATTCAGACATAGAGCTGTCAGGAGATTTGCAGTGTCAAGGCTAAGACAGGCAAATG ATGAGGAGTTGATGTTGTACCTCCTTCAGCTGGTCCAGGCCTTACGTTACGAAGACTTTGATGAGATCAA AGCTGGACTAGAAGCTGCATCAGCTAGACCAAGAACCGAGTCTCATGTGTCCCAGGAATATCACGTGGAT AGGGACAGGAGTTCAAGTCACAACACTATTCCCCATCCCCTCGCTGAGACACCAGAGTCACCAACCCCTC CTGCCACACCCAGGGATCAGGAACAAGGGAAGAAAGACATTGAAGAGTGTAATCTAGCCACATTCCTGAT AGAGAGAGCATGCTGTAACTACACCTTAGCTAACTATCTCTACTGGTATCTACTGGTAGAGAGTGATGAA CAAGATACAATCTCCAAGGATACGCGTATCATCGACATGTACAAGACTGTTCTTAAATGCTTTAGTCAAT CTCTCAGCAAGGGAGGAAAGGATTGTGTTCACTATCGGTCACTACTGGTCAGACAGCACACATTGACCAA TCATATCCTTAATATCATGAGATTAGTAGCTAAAGAGAATGGGAACAGAAAGAAAAAGATCGAGAGGTTA CAGGCATTACTCGGTGACAATGAGCAGTCGGTCAACTTCACAAACTTTGACCCTCTACCCCTGCCCCTTC ACCCGGAAGTCAAGGTTGTGGGTGTGGTCGCGGAGAAGGCGTCCATGTTTAAAAGCTCCCTCATGCCCAT CAAGCTCACATTCAAGACGACCGATCACGATGAGTATGTAGCTATATGTAAGAATGGAGATGATTTAAGA CAGGACCAACTCATTCTTCAGATCATCACACTTATGGATCAGTTGTTGCGACAAGAGAACCTAGATCTGA AGCTGACTCCATACAGAGTACTGGCTACAAGCAGCAAGAATGGCTTTGCTCAATTCATTGATTCATCAGC AGTAGCTGATGTACTTTCGCAAGAAGGAAACATTCAGAACTTCTTCAGAAAGCACGCACCAAGCGAGGGA GCCCCGTACGGCATCAGCCCTGATGTGATGGATACCTACGTGAAGAGCTGCGCCGGCTACTGCGTCATTA CCTACCTACTGGGGGTCGGAGATCGTCACCTGGACAACCTCCTCCTGACCAAGTGTGGCAAGCTCTTCCA TGTGGACTTTGGGTACATCTTGGGGCGGGACCCCAAGCCCCTCCCACCGCCCATGAAGATGAGTAAAGAG ATGGTGGAGGGGATGGGAGGGGCGCAAGGGGAGCAGTACCAAGACTTCCGGAAGATCTGTTATACATCAT TCCTTCATCTCAGAAGACATTCCAATCTAATCTTGAACCTGTTTTCCCTGATGGTTGATGCCAGTGTGCC TGACATAGCGTTAGAACCAGACAAGACAGTTAAAAAGCTCCAGGATAAGTTTCGTCTAGACCTTACTGAT GAAGAAGCAGTTCATTACATGCAGACTTTGATCGATGAGAGCGTGGGGGCAGTCTTTGCAGCTGTTGTTG AACAAATTCACAAATTTGCCCAGTACTGGAGAAAATGAACAACTCTGAACGGTGATGAACAACCAAAGAA GGAATCAAGATGAACCCTAGGTCTCTATCAGTATACATCATTGCTAACAGTGGTGCCTATTCAAACCATG CCTGATTCGCAATATTGTCACATCTCAAAGAGGCTCCTTAAAACAAGTCTCATGAAGTGCCGTACATAGG GGAGAAATATAAGGAAGGTTTTGGAGCGGGAATTTACTGGATGAATTTGCTGCTACAAGTTGATGACTTC AAGGGAAGCACTATCATTCCATATTTGTTCTGTGTTTATACTTCTCGTGCCATAGAAATGGCAGCTCTGT AGTGATCATGTGGATTATGTGGGAACAATGAGCGACTGTGGCATGATAACGAAAGAAGGCCTCTAAGTGT GATTGTCAATGTCAATTTCCTGGAAAATTCATCAAAATCCTCTAATTCTGGATTATACATATATTTGTCC TGACTTGGATCCACAGCACCAAGCTTTAACTATTGATCATAGTTGAATTGTATGCTTGATAGCGCAGTAG GCCCGAGTCATTACATTTATTTTCAATTTTTTTTGGTAATAAATAGGCATTTCGGGTTGACTGGTGGTGG TTTAACAACCCCAAAATTGCTGAAATTTCATTTCATTCTAATCCTACATGTAGACATTCATGTTGGGGTC TACTTGATCTAGTTTGACAGAAAACTGAAAATAATCTGAGTCAAGAAAGAAAGGAATATTCTTCATTTTC TAAATAGATCAAAATTTCAAGAAAATATGGGAAATAAATGACAATTTTTTTTAATGTAAAGATTTAAAAT CGTGAAATCTCAGCAACTTTTAGGGAGGTTCCCCTGCCCCTTATGATTGTCAAAATAGAAAATGTGTATG CTTTAAAAAAGTTGTTTGAATGGCGTTTAAGTGTGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds