Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041605398.1 PREDICTED: Lytechinus variegatus oral-facial-digital syndrome 1 protein homolog (LOC121412610), transcript variant X2, mRNA GGAGAAGACAGTGGAAAAGGCTGGAACATTTAAATCTGTTCAACTTTTTGACCCCAAAGTTAGCTAGCCG AGACAGATCAAAATTTGTGCAATGACAGAATATTGCTGAAGAATTTGAGTCATGGATTCTGATACACAAC CAATGTCAGCAGGGGAATTGAAAACAAGGCTCTACCATACATTCAGAGAAAGGGGTCTTGTTGAATCACT TAAGTCCCAGCTACGAACCAAGTTAGTGACAGAACTTCGCCAGAGTGCTGGTTTACAGCATGTCAAGTTT GCATCAAGCCCATCATCAGTGGTAACGGCTTCCCTGGATGGTTCCTCATCACTCATGCTTAGAGCTGCCA ACTCCCTGGTCGTCGACCACCTGAGACGATGTGGCTATGATTACTCTGTCGCTGTCTTTATGCCAGAAAG TGGTGCTACAGATGACAAGATGTTCACATTACCAGATTTATTAGATCTTCTGAGGATTGCCCCAAGCTCT CGATTATATAAGAAGTTGGCAGCTGAACTACCAAGTTATGATTCAAAAGGATTTCTTTGGCAATTATTGA CAGAGCTCAGTGCTAGTCAAGCAAGAAAACAGGAGCATGTAGGCATACAGGTTGATACACACCCAATACA CCAGTCTTCCCTAGAGAGAAAATTGCAGAGCGTTGATGATGTTTACAATCAGAGATCAGAAGAGGATGAA ATTATAAACAGACATGCCATCCAAGAGAAGCTACTCAAACTCAAACGTGAGATGGAGATCAGATCTAGGG AAGAAATTAATCGTGAGATCTCAAGGTTCAAAGAAAGTGCATTGAAACGTGTTGAATTGGAGGAAAGAGA GAAAGCTCGTAAAGAAATAGCAAGTGCTAGAAGAGAGATTGAGAATACCTACCAAGCAAAGTCAGATGCA CTTAGGGAAAGAGAACAATCTACGATGGAAAGGATACAAAAACATCAAGAGTTAGTTGAGAAGGAAACAT ATGCCCAGAGACAGAGCCTTCTTGAAGAGCTTAGGGCTATTAAACAACGAGAGGCGGATCTCAGAAGAGA AGCAGAGATTAACAGAAGGGCTGCAAAGATGGAAGAAGACAAGAGGAAAGCCTTGGAGGAAAACTTGAAA ATAAGAGAAGCATCTGTGTCAAACATAGAAACAACATATGAAAATAAACTCAAGGAAGAGACAAGAAGGT TTGAATTGGATTATGAGGCTAGACTTGCCAAGAGATTGAATGAGCTTGAACAGAGAGAAGCCAAAATCAG AGCTGAACAGAGAAGTATGGTTGATGAAAAGGAAACCCTAAAATCAGTTAAAGAGCAACTACTTGGAAAG ACAAATCATATTCTAGAATTAGAGAATCTTCTGAAGGAAGCAAAGGGTGAAGCTGCATCAGCTGCAAATA GAAGTGATGCTTTACATGAGAGAATGAGAACAATGATTGATTATCCTACGCTGAAGGAGAACAACACTAT TCTCAAACGAGATCTGGAACATGCAAAAATGCGTATCGCAGAGCTTGGAAGCGAGTACAAGGGAGAGCAG AAGAGGCATGAAGAATTGATCAAGCAGCTGAGTGAGAGGATGTCTAGACCGAGCCCAGAACTACAGGCCT TGAGGAATGAACTGCAGCAGACGAGAGAACAGCTCAGTCATGAAAAGGCAACGATACAACACATGGAGGC ACAGTGGAATGCAAGATTACAAGAAGAGATGGACGCAAACAAGGACCTACGTCATAGGCTATCAGAACAG ACCAATGAGATGTCTTCTCTCATGCGGCAGCTAGCTGATCTCAAATTGGCACTTCGTCAGACTCAGACGG CTCTTAACAACAATATTTTCCATGCAGACAGAAGTCGTGGGCTTGCTGTAGACAACACCAATCACAACAC GATTCTAGGCGAGGACATCTACATGGATACCTCCCTTCATCGTAACACACTAGGTCCTGAGCTTCTGTTG GCTGAATCAAACAGATACCAACTGCCACTGGACGATTCAAACAGCGGGGAAGATAGCGAGTCACAGGGTG GAGACTCTATTGCTTTTATTGAGCAGACCAAGGCAAGGTTTAGACAGTTGGAGAGAGAAGCAGAGCATCT GGAACACAACTACCAGGATCTCCAGCATAGGATGAGTGGTATAGGAGGATCTTACCAGAGTCCAGGAGCT AAACCATTGTTTTCCAGACCTACAGATATGCAAATGTCAAGAATTCCTGATCAAACTTCACATCTACCAC CAGATGGCAGCAGACAAGATTATGGAGAATCCGCTCACAGCTCTCATCATTCCAACCATCCCAGAAAACA CTCTGGTCCACACAAGTCTAAATCTAAAAAGGATAGATCGAGCGACGATAGAACAAGACTTCCATCTAGC ACTGGAAGTACGGAGATGGGTCAAGCTCTTGATCGGACTGATAGAAGGATGTCTGAGAAGCGGACTCGGT CGTCATCCTCATCCTCATCATCATCGATGTCATTGAAGTTGAAGACTTCAGATCTTGGAGGTCCTGATCT GAAAGATGATTCCATGTGGATGTCACCTGGGGCTACCACAGGTGCAATAAACGAAGGAAACCTGCCCCAC CTCAGTGACCATTCCATGCCCCAGGCCTTAAGTGATGATGAACAGAAGAGAGAAGAAGAAAAAAGACGTA GAAAAGAGGAAGAAGAAAAGAGGGTTGAAATGGAGAGAATTAGAAAGGAAGAGGAGATGAAGAGACAACA TGAGGAAGAAAAGATGAGAGAGGAGACCAGGAAAGCTGAGGTTGATGAGGATGAGAGGAGGAGAAGGATT GAGGAAGAAGAAGAGGAGCAGAGAGCATGGGAAGAGAAGAGAAGAAAGAAGGAGGAGGAGAGGAGACGAA AGGAGCAAGAAGCAAGGGAGAGGGAGCAGAAGATGCTCATGGAGCTTCAAAAACAAGAGTCAGCAGGTGC AAGCAATGGTGTTCAAGAGCCAAAGCAAGATAATTCAGCTGGTCTGAATGACACTTATGAGTTGGGAGAC AGTGGAAAGAAGGAAGAACAAGAAGAAAAGAAAGAGAAAGAGGAGGAGGATGGTGTAAAGATTGACCCAG TTATGCAACGCTACATGATGATGGTGCAACAACGCAAGCAACAGCAGGATGCTACTCCAGCAACAAAGGA GCCAACAGTGATATCAGATTCTCCATCAATCAGTCATAAATCAGAAGGAAGTATATCAGGAGAAGAGATG GAAGGAGAGGTAGAAGACCCAGCAAGTGTTGGCAAAGCTTCTGATAATGATGATGATCCTTTTGGAGACT GGTAACTGTCACCTCTTCACTTCATCCAATGTGACATCTAGAGAAACAACCTGTAGAGTTGTTTTATGTT TTGTTATGTATTTTAGAACTTTCTTTTTAATTAACTGGACCAGTACTTGTATTGAGATAAGCGGTAGCTT GAATTGGTGTTGTATGGATAGCCAAATTTGACACAAATTGCTTGTGAATTTTGGTGTTTTTGGCCATGTA CCTTAACCATTATGTTTGTTATCTTCGTTCCAAGAAATTCAAGAAATAATTTCCAGAGGCACCCATTAAT TAATTTTTGGCATACAAAGTATTAAGAAACTGTCTTTAAACAGTCATTCAGCTCAATCTCGAGCAAAGTG AGTCTTATGAATTTAATCAATACACTTGAGTAGATAGATTTCTTGCATTGAGAAATTGTACACATGAAAC AATGATTGAATCCCTCTTTGTGTCTATGGATTTATATTTAAAGTGAAATCCATCCTTATGTCAGGTTTTA AGAGAAGCAGAAAAATTATATAAACGAGCTCCAATTAGGAAGAGGTATTTTCTTATCAAAATATATGAAG GTATATTTTATTACTCAACGTTTATGATTGTATTTCTTGCCAGTGAAACATGCTCCTGTATGTAACTGGT TCTGCCCAGTC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds