Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041604141.1 PREDICTED: Lytechinus variegatus tyrosine-protein kinase Fer-like (LOC121411415), mRNA TATCCATTCATTCGCCCATTGTTAATGTATTTTGACGGTACTATAGCTAGGATTCCAACTTCCGCGTTTG CTGGGTGTATTGTTTCTTTCCTTTAAACTTTATTTCGTTGATGAAGAACTTAGTTTGATTATCGGTGCTT TGTGTGATGTCGGCCTTTGACCTGTGACCCGACCTGGGAGATGGCAAGTGGAAACAAGTTTGATGAACTT AGAAAGAAGTTCAGTGCCGATGGGGTCGGCAATCCTGGACTGGGATTAAAGCCAGTGCCTCCTCCTCCCG CCTCAAAAAATGCGAACTTGGGACATCCAGCACGAGGTGGAGGAGTAGGCGGAGGAGGAAGTGGAGGGAT GGTCACTAGAGGAGGAGGAGGAGCCTTTGGTTATAGAGGTAATAGCTCAAATTCAACAGGACCAAAGCTT TCTAGTAGTCACAGTCAGCCTACTATGCCATCATTGCCATCGAGGACTCAGTCTCAGAGCTCAAGCTCCT CGGATATATCAGACATTCCTCCAGCGACCTCACCAATAGCTGGTTATTCAAAGAAAGCTCTGCCAGCGAG GGTAATTTCACAACCGCCCTCTATGTTCCGTCAGTCGGAAGCCCACATAGAAGAGGACATGTACACTGCT GCTGACGACGAGGATGCCGACATGAATGGGGATGGGGTAGAGGATGAACTCTACATGGTGGACCTGGATG ACAATGATCCTGCCGTTAGTTATCCACCGACATTCTATCTGGCAAGGAACTCGAGTCGTATTGGGTTTGG TGCAGAACTCCAGAGTAAGACTGCTCATGATGCAATCCTCAGACTCAATGATCAAGAACTACGTCTCATG GAAACACTAAAGCGTGTTGTATCTCATCGGATGAGAGCGGACAAAGACTATGCAACGGCCCTGCAGACCA TTGGTCACCTGGCAACCAAATTTGATACAGATGCCCAGTTATCACACAACAACAGTCCTTTACTCAAGGC ATGGAATCACCTGATCGAGGAAACGGACAGAATATGTAAATTGATACGGAATAACGCAGAGGAGATTCAG AACATCATAGAGAAGCTTACATTGCTCATCAAAGACAAGCAGGAGTCCAAACGCCAGTACATGCAGGAAC GAACCAGGATAGACTCCGAGTTTATGAAGGCAAGGAGAGAGGTGGATGAAAACTTAAGTACTTACAAGAA ATCAGCTCGGGAAGCGAGGGAGAGTAAAAGCAAATATGAGGAACAACTCCAGAAAGGTAACAAAGTCAAA GACATTGACAGAGCCAAGGAAAAGTACAAGAAGTGTGTGATCAAACTGCACAAGGCACACAACGACTATG TCCTGTCGCTACGGGCGGCAGGGTTACACCAAGAGCACTACCGCAACAACATCCTTCCAAGGCTACTGGA ATGTTTACAGCAGACCCAAGAGAGCCAGGTCGCTCAGATCAAGCAAGTGATGGTAGAGCACTGTAATCTG ATCAACTCCGCATCTGGGAAGTTTCTCTCCTACTACAACAGCATCATGCAAAATATGGTGGAGATAAGAC CAGAGAAGGAATACAGCAGCTTTGTGGAAAATTACAGAATGGAGCCCCCTGCCATGGAGACATTCACCTT TGACCCCTCACCCTCAGAAGACTTTCCCGATGGCCTCAAAGAAAACACTATAGTACTTGACACCCTCACA ATTGAAGCCATTCAACACTCGCATTCATCATTAGATGAGCAGCTAAAGAACACGAGAGAAAAACTATCAT CCAAGAAACAGGAACTCAAGAACCTTGATGAGGAAATACGAGCTATCCCACCCTCGCCCAAAGAAGAGGG CGCTGTACTAGACCTGTTGTCCAAACAGAAGCAGTACCGGGACACGAGCCGGGAGATCCAGGAGCTACGG TGTCAAGAAGCCAAGCTTGCTACTCAGTACTCTATGCTTGATGCCAAGCTGGGGGAGATGGGGGACGAGG ACAACCTTCCGCCCGGCATCGTCTTCCCGGAAGGAGGCGGCACGGGGACGCTCTCCACCCGAAGCACCAT ACAGAGTCCTAACCTCAACTCAGTGAGTCCACATAGCACAGATTCAACGACAGAGCAGAAAAGTATGAGG TCTCACATGGCAAAGATGACCAAGATCTTCAAAGGGAGAGGCCATGACAGCTCACATGAGAGGGAACCAT GGTTATGGTACAGAAGACAGACTAATCAGTCCATGATGGCAGTGAGTGTGAAGCCAAGCAATAACCAACC TACAGAGCTCCCCCTCGAGGAGGAAGAATTCTACCATGGTGCGTTACCGAGGAAAGAAACAGAAATGTTA CTGGTCAACGATGGGGATTTCTTGGTTAGAGAGAAGAGCGATGCCNTGGGACGCTATGTCCTGTCGGCAA AGCATGCTGGGAAGGTCCGACACTTCCCCATCCAGATAAACGATGAGAATATGTATCGCCTTGAGGGTGA TGCTTTCCCAACGGTGGGAGAACTCATCCGCTTCCAGCTGAACAGCAGACAGCCCGTTACTAAGGCCTCG CAGGCCATACTCCTCAACAGGGTGTGTCGGGTCAGGAACGAGCACGATCTTAGACATGAGGAGATTGATC TAGAGGAGAAGCTGGGAGCGGGTCATTTTGGTGATGTTCATCGAGGAAGGATAAAGAGGACCCAGCTTGC TGTAGCAGTGAAGACGTGCAAAGAGACGGTTGACGCGGCAACCAGGAGGAAGTTCCTCCAAGAGGCTAAT ATTCTTAAACAGTACGACCACGTCAACATTGTCAAGCTCATTGGAGTCTGCACGGACAAGCATCCTATCT ATATAGTCATGGAACTCGTGCCTGGTGGTGACCTGCTATCTTTCTTGAGGAATGATCAGAATGAACTATC CACCAAGCAACGTGTCAAGATGGGTGAAGATGCTGCCTCTGGGATGGCCTATCTGGAGTCTAAACAGTGT ATACACAGAGATTTGGCTGCTAGAAACTGCCTGGTAGGAAACAAGAATATAATTAAGATAAGTGACTTTG GTATGTCAAGAGAAGATGATGTCTACACGATACGTGAGGGCGCCATGAGGCAAATTCCTATCAAATGGAC CGCTCCGGAGGCTATGAACTTTGGTAAATACACATCTATGTCTGATGTGTGGAGCTTTGGTATTCTCCTA TGGGAGATATTCTCAAACGGGAGTACACCGTACCCTGGCATGACGAATAATGAAGCTAGGGAGAAAGTGC AGCAAGGTTACCGTATGCCACCACCAGATAACACCCCTGATGAGGTTAGGATACTGATGGAGAATTGCTG GAAGATGGTGGATGAGGACCGGCCAAAGTTCAAAGACGCTCAGTCGACCCTCAAGAGGGCTTATAAGTCG GTGCGGTAATGGTACGCAACATCTGAGGGCGCCAAGCACATGTCCTCGATTTAGGATGTCTTATTGATTT TATCATATTCTTCCATGCACCTTAGGGGGTAGGGGATAATTTTTTTTTTAATGCATTGGCGATTCTCAAG AGAGTTTTTAAGTCAGGCCACAATTTCCTCATCTGTAGGGTGACCGTGTTTCGTTGATTTTGTCATATTT TGATTAAAAGAGATCGATTCTAGGAAGTTATTCACCTGAGGGGAGTGATGCAGGAAGGGAGGGAGGGTAT TGCATGGGAAATTCTGAATAGATTTATTTTAGTAAAATGTCCTCTTTATTTTGTGTGTTTCATAGATTTC GTCAAATTTTCCTCATCAGGGGGCAATTCTTGGAATTTATGCACCTTAGAGATGGGGTGTAGAGAGGGGG TGGGGCTATTCTTAAAATGCATGGGGAATTTTCTAGAGCCAAACATATCAACTTCTCCAAAGTCTTTCTA ACTATTCATCCAATCCACCCAACACTTCTGTTTAAGGTTATTTGTATTTCATGTCATAGAAACCGAATTC CTTTGATTTAGTTATCATCCACATCTTCATGAATATATTATAGTTTGAAACAAATATTTGACAATTAAAC AGATCTACCCCATAATTTTTTTATAGAAATGGTATCCCACGACATCATTCTCGCATTACTCATATCAATT TTACAGAAAGGCATCTGATTTCAAGTATACATGGCTGGATATTAGCTTGGATTTGGCTCTCGTTTGAGTA ATCAACCTTTTAATGAAAAATGAAATCATAATGACTGTGACTTTTGTGTATATCTGCTTTTAAATGTGCA GAAATTTGTCAGCATTTTGTTTACTCTTCCTGTCATTACAATCATAAAACAACTCACATTGATGATTTTT TTTTTCACTCTATATTTTTCCATTTGAATAAGAATCCTATGTACAATAAAAACATCTCCACAAATAACCA ACTTGAGGAATTAATTTTCACTCTGTTTTTCTCCATTTTAATGGGAATGCTAATTTTTCATTTGAACGTT AAAATATCTTCCCTAGTTACCAACATGATGTTGTAAGATTGCGATTAAGGGAAAGACATTGTTGCTTAAA GCTATAAAAAAAACACATTGTTTTGAAGAAATAAATTCAACAACACCTTTATTCTTAAGACTTTGTTTGT TCTTCTGCTTTTTTCTTCATGGGGATAGCGGTAGGCTTAGGAGAAGGTGTTCGTTGGTTGTTTTGTAATA GCACTACACAATTATGTTTATATTTTGGGCAGTTGGTCTAATTTGCTATTCAAAATCTTTACTGGGGGAA TCTGGTCTGGATATGCAGCCAAAAGTCTGTGGCATTGGATCGTGCACAGAGATTGAACCAGCAAGTTGTA TTTGTGCTAGTCTTATGTCAAGACCCACTTCAAAGTTTCAGTCAGGGTCTGTGCCTACAGACTATATATA ATCTCTTCTCCTTCCAGTATCAGAGATGTATGATTGCTTGGGATATGATTCCAAACGTATATATATATAT ATTCAAAAGAAAAATTATGCAATATAAATAGTTTATTTTGACAAATTAATCTGTAATTTTTTTATGTGAA TAAATGCTTTATTGTTCACAACTGTAAATTAATCACAATGTACAGCTCACCTGAAGACAAAATGATAACT CTTTGAAAATGTCCAGTAGAATTATCCATGTTGCTCTTAGAAGACGAATAATGTATATTACATTGAAATA CATTATATATATATTTTCTAGTACTGTGTAATTAGAATTTATGTTATTTCAAAGTTAATATTGGGAGCAA TGAGATCTGCAAAAAAAATCAACTCATGAAAATTTATTTTCTGTGTATTCCTGATGAACTGGAATGCTAG AAAAATCTGATATTCAGACATTGTATATTGAAATCTAATCCTTCTTCTTATTTTCCATTTATAAAATGGA TACTGATCTATCGGCTTATTAGACTAGATGAATTCCTTTACGTTTCTTTCATCTCCTCACAAAACCTTGT AATGGGGGCTAAGGAACTGACTATAAATCTAGAAGGGGAAATTATGAACTATATTACAGTATAAACTGAT AGCACCCACCTGTATAGAAGGGTATCCTTTTTTATAAAAGGGGGAAGTCCATCAAGTTGGTTTGATTTTT TTTGTGACATACCAGAACTATAAAAAAAACGTGTCTCATTTAAACTAGCCTTATATCTCCAAATGATTCC TTCAGCAAAGGTTCACTAATTAAACATCATGATTTGTTGCAACTTGAGACCTGTCAATCTATTGCCAATG ATGTATTTATGAATGTGATGTCCATGTAACATTGCTAAAAAAAGTTAATTTGAACTACGACAAATCCAGA AAAGATTGCATTATCAAACATGAATTGCTATGGTACGAGACATTCCTCACATTGACACATCTAATCTGAG CCACATCTGAATTGATTTTTCACAATGAAAAAGAATAGTTGATACATACATTACATGGACAACTTGTCAT TTTTTACCCAACCGGATGGACCTGGATAAAAACCTTAAATATGATTTCCCTTGAGCAAATTTCAAAATAT AGAAATATGTAGTAGAGAAACCTAGCCATGTAGACCCCTTTTCTAAAGTCTTTCATTGTTTAATAATCCA ACTTATACAGCATCTGTATCCATGACACTGATTTAGACAGATGGTAAACTCGGAACATTAAGGCTCATGA CATGATACATTCTTTTAAACATTCTAGTATGATATCAAATAGGAAGTGATATAATATCATTTCACAATGG GGATTTATGACAGCCTATATTCTTTTAAACCTTCTAGTATAATATCAAGTAGTAAGTGATATAATATAAG TTAGCAATGGGGGTTTATGACAAGCTATATTCTTTTAAACACTCCAGTACAATAGGAAATAATAAGTGAT CATGTTGTATTATATATCAATATGGATTTCATATTACAGTCAGTTATTGAGTAATACACTTGGCCTGGCA GTTTGGTTATGTTTCTGTTCAAACATCTAAAGTGCCTTCGTGTTAACATTGTAGGATAGACATTTGTGTT GTATATCATTTCAACAGTGCATTAGATATTGTCTTTCCACGTACTTATATTTTCAACTCATTTAAAATAT ATGCCTTTAGTGTTTTTGTATTAAACTTTTCTAGAACAATCTGTGGTTACAATCATGCCTTTCACTCACA CCATATATTGTAAATGTGTATGATTATGATAGCGTCATTATCATTGTATATAGAAAAAAAATACAGAAAA TTGTATGTATGTACTAAATTTGCTATTTATAACGATTCCTACCATTTCTGACCATTTTTTTTTAAATGGT CGGTAGACAAAAGTTTGTACATTTTGGCTGTGTATCGTGTACATGTCATAAACTTTAATGTATGTATTGG AATGTAGAAATTTATATATTTTCAGCTGTATATAAGACATATAGAGCCTGTAAAGATTTGTTTTTCTAAA AGTTAGTAGCATTGTCTTCTCTTTTAGATCAGCCCTTTTCCTTGATTTAATTTCCTCACTATTGCATCAT GTCTACACATGTGATAAGAAAAGATATATAAAAATTATATGCAGATTTATCTAGCGCTTAATAAATATGT TTTTAAGCATGAAATGATCAAAGTCCAATGATAGCACAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds