Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041603586.1 PREDICTED: Lytechinus variegatus SRSF protein kinase 3-like (LOC121411083), transcript variant X1, mRNA TTTGGAATGCGGCTATCCAAGCATATCCAAGTAGAGCTCTATTCAAGCGCTACCTTCATCAACACACATC ACGCAGTCAATACGCCTACTGCTTCTCGCTCCCCTGATTGTCCAACAATATAGAGAGCAGTTGTTGTGGA ATGAAGACGCCACGAGGCATTGCATTGACACTCCACTTCTAAACTGCATGGATATGATGTTAACGACTTG GGAACATCTATTAATGGAATACATTTGATTATTGCACAAGGAGAAGCATTCATATTTTGATTGTGGATTT GTGAGCGCTTAATAACGTCTGAGGCTCTGTGCAGTGCCAGTTCGGCCGATGCTACCGTGGGCCATCAGCA CATGAAGATTCATTCCACTCGATCTTCAATCTGTTTATATGCCGGTACCACAGTGAGAATTATGCTTTTG CATTGTCATGCTTCAGCGCACATTTGCACAGCTCACTCACCAGCCTTTCTGCTTTCTAACACTGTCGCTG TCGCCTAACTGGTGGGACTGAAGTTAAGCCTGTCATGGTGGCAAAATGTTGTTGGGGCTTATTAGTTTCC ACATTTTGGAGCATCAGGATAGAGATAACCTGGAAGAGAGATGATGACAAGATTAGTCGGAGAAATGACA GATATTACATGTTATAATATTGCAACATGGCCATTCACAGTTTATTAGTTTCCATGGAAACTTCATATTA CATATAAAGCCTGGCTTTTCATCATGTGGGGTATGCCTAATAAGAGTGGCTGCACCATGGGGTAACTTTC ATCGCTAGACTTGGTGAACTGACCTTTTGTTCTTGACCTGAATCTTAAGTGGGGTCAGAGGAGCCTATCT GACTAACTTGGGAAGGAGGGAGGAGCTCAACTCAGTACTGTGGAAAAACATCAACTGCCCTGCACCAAGT GCGCTCTTGATGCCAGGGGGTCGTAAGACGTGCATGTACTGGAACCACGCTCTCCCTCGTGTTGGGGGGT ACATTACCGACCTGCCTTTTTACCCCTCACAGGAGTAGCACAAAACTTGAACCCGACATCAGTTTGGAAT CAGGCCAGCTTTGAGTCAGCTATGTTACACCGCAGCGCAGCCGTCTAGATATTGAAAGAGTGAGATGGAA CATTGCTATGTTTATGGTAAGCAGTGATGCAAACATTTTATATTACATGCTGACTCCTTCAAGATCAGGT GGTTGTCAACCGTTGCAGCATTACGGACCTCTGAGAATCTTCAATGCAAATCCCAGTAAAGGAGTAGGAG TTTTGGAGAGGGAAATCTGCTTGAATGGAATTGGACTGCCTTTGGATGAACGAAAACAACGGGCTCCGAA AACTGGCAGCAACTGCTGCAGCCAGACTGTCCTTCATTGACAGGGAGCGTCTCCGGCGGACATTTAATGT TAAGAAAGTGAAAGCTAGGATTTCAAAGTCGACAACAAGGATGAGAGAAAAGATGCCATCTAAGCTTGCC TCTTTCAATCCAGACTTGGATCTCAGATCCAAATTCACACAGCTTGCCCTTAAATTTCGGGGAGGGGCAG GGAATGAGATAGAAGGTTGCTACCCCTATTCCTTAGGATCAGACTCTGACACTGTGGACAGTATGTCTGG GAGCCCCTCCCAATCCCATCAGGACTCAGACTATGAATTTGTTTTTGTTCGGAGGAATAAAACAAAATGT GCCCATAGCAACAAGCCTCCACCCAAAGTATCCATAGATTCTGAGGATGAGGAAGAGGAGGAGCAGGAAG ATCGCGAAGGGGAGGAGCAAGGAGCCTATGGATCTGACGAAGATGAACAGGAGGATCCTCAAGACTACTG CAGAGGTGGTTATCATCCTGTGAAGATTCTTGATCTGTTTAATGGGAAGTATCATGTTACACGTAAACTT GGATGGGGGCATTTCTCTACCGTGTGGCTGGCATGGGACCTTACGGGAAGGAGATATGTTGCACTGAAGG TTGTGAAGAGTGCAGAACACTACACAGAGACTGCTCTGGATGAGATCAAACTTCTCAAATGTGTACGAGA CAGTGATCCTACTGATATACACAGGGAGAGAGTTGTTCAGCTCATTGATGACTTCAAGGTTACTGGCGTC AATGGAACACATGTATGTATGGTGTTTGAAGTACTTGGTAACAATCTTTTAAAACCCATCATCCAATCAA AGTACATGGGACTACCCATCAGACAGGTCAAGAGCATTATTAGACAGGTGTTGGAGGGTCTAGATTACTT GCATACAAAGTGTAAGATCATTCACACTGATATTAAACCCGAGAATATCTTACTATGTGTTGATGAGGAC ACTATCAGGAGACTAGCCAGTGAGGCCAAGGAATGGATGAAAGGAAAAGCAAAACCTCCAGTTTCATCAG TGAGTACAGCTCCAGCAGAGAAGAAACCTCAGGAGAAGATGTCTAAAAACAAGAAGAGAAAAATGAAGAA GAAACAAAAGAAACAACTGGCTCTCCTGGAGAAACAACAACAGCAGCTCCAAGAGATTGACCAAGAAAAG ATCAGGAGACTATCAGAAACAACTGAACCCGATGCTGATAGGGATGGTGAGGACGTCACAACGGATTCAC CCCAGAACCAAAGCAACAACGGAAACCAGTCATTGGGAGCTTCGGGAGACAAGATGGTTGAAGTACTAGA AGAAGCTGAAGAAGGGGAGGAAGATGGATCTGTTTCGAGGATGAAGTCTGCCAAATCTCCAGAGAGAACT TCAGAGAAATCAAGTCCTGAAGAGGAACAGAAAGGAGTAGTTGTGGGTGAAACTGCAACCAATGGGAATG ATGATGCTGGTTGTAGAGGCGATGAGGCTGAAGAGGCAGATGTCTTCGAGGATGCATCCGAGAGGATACC GTCACCTGTCAACGAGAAAGGGGACGGTCCTGGTAGGAAGGAGGAGCAGGAGAAACAGGAGGGGCTTTGT AACGGGTACGGGGAGGAGAATGGTGATGGAGATTCAGATATTGACCTGCCTCTTAAACCAAAGCTCCCTC TAGATGTCAAAGAGAATGGACTGGATTCAGCCTCTTCTACACCTACCAAAGAAAGTCTCAAAAATGCTGC AAACAAGGAAAAAAGTGAAAACAAAGGCAGCGACCCCAACGAGAATACCATTTCTGAAAACTCTGACGAG AGCAAAGACAAAGAGACTCTTAACAATGGAGCAAAAGAGAATGGAAACCACACAACTGTAGACAATAAAC CCTCAGACATAACACAGGAAAACAAAGACATTGAACTCAATTCCTTGGGAGCTGATTCCATGCTGAATGG AGGGATGACCCCTGAGAATGCTCTGGCAGATGATGTGCAAAAGGAAACCTCTGGCGATGATAACAGGAGA CAGGAGATCGATCGCAAGTGGAAGGAGTTGGAAAATTTTAAGGTGACAAATAGTGGGAGTGAAGACAGAA AGGAGGAAGGGAATGAGAGTGCAGCCACCACCCCTGACGATAGCAATAAAGATGAAGAATTGATAGAAGG TGCCATTTCTCCCGAAAGGAAGGATGAACTACCAATCAAACTGGCTGACCTCGGCAATGCATGCTGGACT TACCATCACTTTACCGAGGACATTCAAACCCGGCAATACAGAGCTCTTGAAGTCTTAATAGGAGCAGGGT ATGATACAGCAGCAGATATATGGAGCACAGCTTGTATGGCCTTTGAGCTGGCTTGTGGAGACTACCTGTT TGAGCCTCACTCAGGAGAAAACTATTCTAGGGATGAAGATCACATAGCTCATATCATTGAATTAGTGGGA CATATACCCAAACACATTGCTCTCAGTGGGAAATACTCCAGAGACTTCTTTAACAAGAAAGGTGAGTTGA GAAACATCCAGAAGCTGAAGCCTTGGAGTCTCTTCCATGTCCTCACCGAGAAGTATGAATGGCCGGAGGA GGAGGCCAAAGAGTTTGCCAGCTTCCTTCATCCAATGCTTGAGTTTGATCCAGCCAAACGTGCCACAGCC AAGGAGAGCCTATCCCACCCATGGCTCTACTCATGATGATTGTTGTCTTCTGACCACCACCGCAACCATT GTTTAGAGTTCCTTCGTTGTCATTGTGTGAAACCGTACAACCTCATCTAGGTCTTTTCTCCTTCCGTTCA TCCACCAAGGGTTTCTCCCTCTTTTTGGCATTTACTTAGTCTTTAGTTTGGTTTAATAGGGTCAATGACA TCCACATGTCAAAGGGTAAATGATTGACGTTCAGTACATGAAAACAAACACATGGGACTACATACTTGAC ACAAGATATTTTTATGTCCTGTTGGTAGTAATCCCATTTGATATCTCTTCACTTCCATGAAGTGTCTCTG TTTATATGTCACTATATTCTTTGACTTTATATTTCTAGCAATCATTCATACATCTGTTCTCTCTTAACAT TTAAATATCCCATATTCTTAGGTAGGGGTTTCTTAGTAGTAATCAGAAAAAGGTTGAAATCAAATACGAG CCTAAACTCAAACCCAAGTTAATGTTTAACCAAGCATGAAAGCACATTTGTGACCTTTGGATTGAACACT TTTCAACAAACCTCATGTGATAAGCGCGGATGTTCCCATGTTAAGTCCTATGGATAAATCCCAATGATGG CTGAATTCTTTTTGTAAAAAAGAAGGGGGAAACCCAAAATGTCAACTTTGCTTCTGGCATCACCCATGTA CTCAAACACCCCCTTGTATTTCCTGTGTGATTATTTTTGTGAGATGAATGGAAAGAATATTGAGAAGCAG TCAAGCTGAATGGATTAAATTTGAAATCTGGTAATTGATTATAGTCTGACATCAAATCTGGCTTTTATGG TAAAAGTTATCATCAAACAAAAACTTATATTTGAGAATGGATTCAGCTTGGTTCTAAGTGCTTATTTTGG TTGTACTAACATTGGGAAATGGGTTATCACTGTATTTTCCTCTTTCCTTAATTGTCCCTTTATTTAGCAA TTTTTATGAATATTTTCTCCATTAATTTTTCTCTAATTTGCAACTCCCTTCCAGAGTGACATGGTATAAT GTAATTATACCATGTATACCGAATAAGTAAAAAAAAATTTCCTATTCAAATAGAGTTACTTTTCTATTTA TTATTGTTATCCCCATTCCCCTTTCCTGCACATTGCCATTTTTCCTTTCTGTGAATCATTTTCTATTTAT TCGGGTGGTTTTCAATAAACATCATGTCTACTCATAGTTTTGAAAGAAATTGAATCAATGTTTAGATGGA TATTTTGTAGGGGAAAAGTATTGTAGATTGTTGATTTACACTATATCTTTGTATTTCTGTGTGCTGAGCT TCCATAGTTATCCCAATCTGTTTCAGTTGTTTCTTCTTGTTTCAAGACCACTGTGTCATGTTGGTTGTTC CTGTCATAGAGTAAATATCCTTCCAGGCAAGCGTCTAGATGTAGTCGAAGTTCCTTTTCAGCTCAGAAAG TTTAACTACCATTTTTTCTGAAAATAAGCTATTTGTTGTCTGGCACCTTTTAGCAAGGAGTATTGACATG ATTTTTTCTGAAGACCTGTACTAGTGTCAGGTGCGTGTATGACACCGCCAACTTAATACACCCAGTTGGT ATGTGTTGAACCCCCATGAGCTACTAGTAACTTGGTGAAATAGAGTTGTAGGACTAATTTCACATGTTAT TTTGGATGAAATAGAGGTATGATTGTGTCGTATTTCTACCCTGTGTGTGTGAGATAGCTTTGGGGAATTT CAGGTAAACATGCCACCGACTATGAGGGTATCACGTGGACAGAAAAAATGATGGTTTATATGGAGAGGAA GAACTCTCCATTGTCTCCAAATGAAAGGAAAATTGTGAATCTATGGTGTTGGCTATCAAGAAAGGGGCAA TCCATTCTGCAGCACTCTCTGTCAATATCATCAGAAATTCTTTAAAACTTTTGCAAAGTTGTTTCCATTG ATAACCTGTTGTCTCAATTTGGAAAATACCTATTCACTTCACTGAACTGTTCTATCTCTGTTTGTCTTCT TAGAAACTTGAATGTTGATTGGATATATATTTGAATATTGAAATACATGAAACAAAGCAAAATATTAAAT GCCTTCTTTTAGTAGTTGAACAGGAGTGTCAAGTTATTGCCAATTGATTATCTAAATGTTTCTCTGGAAA AGAAAAAAATAATAGAAGAATGAATGAAAATAGAATACGGTATGTACAATTGTAAGAATCTTTTTATATT TGTAAAAAGTTTGAAAGAATCCATCCCAAATATTGTAAATAGAATATGTCATTGTAACATGTTTGCGTGC GATATTTTTGCAATAATCTATTCCAAAGCCTGTTTTCAGTAGATGAAATTGTCCATATATGGAATTCTTA TGCATCTAACATAGTGCAGGCTTTGTAAATGGAATAGGTTTCATATTCCCTACTCATATATCTCTTAACT TATTGCATTATGTTGCCTTCTGTTTTCAGAATGATCTATATATATACTGTTCTCATGTCATGTGTAAATA TCATCATTCATGTAGAAAGAAAACATTTTTGGTGCCTAAAATACCTAGAGTTTCTCAGCCTTATGAGTTG TAAAACTGCATGGCTTATCTTAGAGTTTGTCACACTAGAAATAATTAGGTTTATAAAAACATGAGAGGGT ACTATTTAGATCCATTTTATTCTCCCAAGGTCCCCATCACACTTATTCAAAACCAACAGGAATCAACCAG AAATAACCAGAATAAAGATAATGGCATTTCAAAGTTCAAGAGTGTCTTTGACCTGGTGACTCCTTGATAC TAAGTGATTTTCCAGCATCCTCAGGCCATGCTTTCATGATGCTTGCTGTTTTCAGATGTAACCTTTTTTC TCCCTCGAATGCAATCAAAATGTTTCAAATGATGTTAGGATATACAAATATAACAAGATCATTTCCTCAA ATGACATCAAAATGCTTGTAGGAATTCAAATACAAATATCAGAAATACATTCAGAGTACAGTTAGAATGC ATTTTGAATGCGTTATCTCTTATGATTTCACCTTGCAAGTTTCATGATTGAGCATAGCATTTGTGACAGG CACTCAGATTGACCCAAACACTTTTTGGTTGCAGTTGGAGTTATTGGAATGTTCATACTACTTGCAATCC TGCTTATTTCGCCTGTCATGGTCTTATTAAGATTTTGTAACAAATTAGTACAAACTTACTTCTATTTGCT CTTTTTATTTCATTAATGACATGAGATGCAGGTATTTGTTGATGTGTTAGGGTAACCTCTTGCAAGTTTT GAGAGCAATGTGAATTTTGGAAACTCCAAATGTTTGGATTAGGTGCAATAGTTCTACTGAGTGACCTATC ATTTGCGAGGTACGTCTTCTGTTGAATGTTATCCAACGCATTTGAAACATGGAATCATTGAAATACAAAT GAAAACAAAAAGAGGTATTATACTTAATTTAACTTGATAATGGTCCCATTTCATGAAACATCTTAGTACA TTGAATCATAATTTGCTAAAAGCTACTAAAATAATGGTATTTGTTTGGGTTATAGCAAAGATGTCATAAA ATGTTATTGATAACTACGTTTTATGAAATGGGGGCCTTTACAGCTTTGAAGTTCTTATTCTATTCTTGTT CATATCCACTGAATTGCTATCCACATTTACTTGAAAATTAAAACCATTAAAATTTGCTGTCACATAATAA AGCTTTATACATTTACAATATAAGCAAAGTCTATACCTACAGTTGAAAGTGAAGATAATGTGATGAAAGT CAAATGCTTTTGGATTACAAAGCCATTTTCTGCTTTCTCTTTAATGTACAGATGTTATGTGATACCAAAG AAACAAAATTTTATGTATTAGACTATTTGGCTGGCTTTTTACCAAATAAGTAAACGGAAATGAATAAAAT TGTTTCAAGCAATGAAGAAAAAAAATCATCTTATTTGATATCTTTTTGAGCCCTACAGATCATAGACCCT GATCATTATATCGTAGATAGAACCCTATGCTCTTAATAAAACAGATACCAATGTGAAGAGAGTGTTACTC AAGGCATTTTGATATATTTGAAGCAATCAGTTTTCATTGCACACATGTATAAAGGGAGAGAGAGAGCTTT AGGTAAGTTTTGTTACAATCACTTGTATGTGTACAGTACTGTGTACATAAAGAAATAATGACATATTTCA GTAGCTATACAGAGAAATATTGTTGGATATTGTTGTTAATGGACTATTTTTCATTAATAAAAGTAAATGG CTTATTGCATTCATGTTTAGTTGTATTCGATGAGTTTGAATTCACTTGACTCACTAATGCAGAATATTAA GGATATCATGCTGATTGTTTTCTTTTAATTATTATGCCTTCTTTTCTAGTATTTTGAGTGAGTACATTAT TTATTTTAAACAGTTGATCTTTGTTTTTTCATATTATTTGATTGATGAGAATTGGAATGACAATATCCTG AGAATTCATAGGACATTTTCAATAGTATCCTCTATGTCAAATATAAAATGTGTTGTGCTCACATATATTA TGCAGAATGAATTGCCAGTTTGAATATATTTCTGTTGTCACTCGAGTACACTTTATTACACATACATGTG TAGCATTGCATATCAGGCATCAGTGATAACATTACTTTGTTCCATTAATAATTGAATCATTATCTGTTTT ATAGCAGTATACAGTTGAATATTATGTATCCTATTGTTAAGCAATGTTTGATAAATCTTTAATTTACTAT CTAGAAATACACTAATGTATTGATAATTGTACAATACAAACACACGGCATAATAGCACCTAGCTGCATAT GCTCCAATTCCCTCCTCCCTCAAATTATTGAAAGTGATTTCTAGTTGATAAACTTTTGATTGCTGTCGTT GATAAATTAGATCAGACGTTAATGATTAAAAACATATTTTAAGTACAGTTCAACGTATGACTCATCATTA TTTTACAGTTTTTGTTTTGTTTACAAACCTCAAATACTTAAAGCTAATTTTTGAAATGTTCATCTGCAGG TGTAAGCAAATAATTCTCATATATGCTCATTTTCTGTAGGAATGTGTTGAATTGTCGATCTGGAGTTCGA CAATATTAAAATATGTAGTGCTGGAACAACCA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds