Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041603591.1 PREDICTED: Lytechinus variegatus SRSF protein kinase 3-like (LOC121411083), transcript variant X6, mRNA GTTTCGACCGAAGTTGAAGTAACTGTTGGATATATCTATTCCAAATCCACTTTTTTTGTTGATTTGTACT GAAATGAGACGGGACGTGTTGAATTCATTCGTAGATCGGTTTTTCGACAGGTTGCGCAATATATTTCTTA AAAAATACTACCCGGCTCTCAGAAATAGTGCCCATAGCAACAAGCCTCCACCCAAAGTATCCATAGATTC TGAGGATGAGGAAGAGGAGGAGCAGGAAGATCGCGAAGGGGAGGAGCAAGGAGCCTATGGATCTGACGAA GATGAACAGGAGGATCCTCAAGACTACTGCAGAGGTGGTTATCATCCTGTGAAGATTCTTGATCTGTTTA ATGGGAAGTATCATGTTACACGTAAACTTGGATGGGGGCATTTCTCTACCGTGTGGCTGGCATGGGACCT TACGGGAAGGAGATATGTTGCACTGAAGGTTGTGAAGAGTGCAGAACACTACACAGAGACTGCTCTGGAT GAGATCAAACTTCTCAAATGTGTACGAGACAGTGATCCTACTGATATACACAGGGAGAGAGTTGTTCAGC TCATTGATGACTTCAAGGTTACTGGCGTCAATGGAACACATGTATGTATGGTGTTTGAAGTACTTGGTAA CAATCTTTTAAAACCCATCATCCAATCAAAGTACATGGGACTACCCATCAGACAGGTCAAGAGCATTATT AGACAGGTGTTGGAGGGTCTAGATTACTTGCATACAAAGTGTAAGATCATTCACACTGATATTAAACCCG AGAATATCTTACTATGTGTTGATGAGGACACTATCAGGAGACTAGCCAGTGAGGCCAAGGAATGGATGAA AGGAAAAGCAAAACCTCCAGTTTCATCAGTGAGTACAGCTCCAGCAGAGAAGAAACCTCAGGAGAAGATG TCTAAAAACAAGAAGAGAAAAATGAAGAAGAAACAAAAGAAACAACTGGCTCTCCTGGAGAAACAACAAC AGCAGCTCCAAGAGATTGACCAAGAAAAGATCAGGAGACTATCAGAAACAACTGAACCCGATGCTGATAG GGATGGTGAGGACGTCACAACGGATTCACCCCAGAACCAAAGCAACAACGGAAACCAGTCATTGGGAGCT TCGGGAGACAAGATGGTTGAAGTACTAGAAGAAGCTGAAGAAGGGGAGGAAGATGGATCTGTTTCGAGGA TGAAGTCTGCCAAATCTCCAGAGAGAACTTCAGAGAAATCAAGTCCTGAAGAGGAACAGAAAGGAGTAGT TGTGGGTGAAACTGCAACCAATGGGAATGATGATGCTGGTTGTAGAGGCGATGAGGCTGAAGAGGCAGAT GTCTTCGAGGATGCATCCGAGAGGATACCGTCACCTGTCAACGAGAAAGGGGACGGTCCTGGTAGGAAGG AGGAGCAGGAGAAACAGGAGGGGCTTTGTAACGGGTACGGGGAGGAGAATGGTGATGGAGATTCAGATAT TGACCTGCCTCTTAAACCAAAGCTCCCTCTAGATGTCAAAGAGAATGGACTGGATTCAGCCTCTTCTACA CCTACCAAAGAAAGTCTCAAAAATGCTGCAAACAAGGAAAAAAGTGAAAACAAAGGCAGCGACCCCAACG AGAATACCATTTCTGAAAACTCTGACGAGAGCAAAGACAAAGAGACTCTTAACAATGGAGCAAAAGAGAA TGGAAACCACACAACTGTAGACAATAAACCCTCAGACATAACACAGGAAAACAAAGACATTGAACTCAAT TCCTTGGGAGCTGATTCCATGCTGAATGGAGGGATGACCCCTGAGAATGCTCTGGCAGATGATGTGCAAA AGGAAACCTCTGGCGATGATAACAGGAGACAGGAGATCGATCGCAAGTGGAAGGAGTTGGAAAATTTTAA GGTGACAAATAGTGGGAGTGAAGACAGAAAGGAGGAAGGGAATGAGAGTGCAGCCACCACCCCTGACGAT AGCAATAAAGATGAAGAATTGATAGAAGGTGCCATTTCTCCCGAAAGGAAGGATGAACTACCAATCAAAC TGGCTGACCTCGGCAATGCATGCTGGACTTACCATCACTTTACCGAGGACATTCAAACCCGGCAATACAG AGCTCTTGAAGTCTTAATAGGAGCAGGGTATGATACAGCAGCAGATATATGGAGCACAGCTTGTATGGCC TTTGAGCTGGCTTGTGGAGACTACCTGTTTGAGCCTCACTCAGGAGAAAACTATTCTAGGGATGAAGATC ACATAGCTCATATCATTGAATTAGTGGGACATATACCCAAACACATTGCTCTCAGTGGGAAATACTCCAG AGACTTCTTTAACAAGAAAGGTGAGTTGAGAAACATCCAGAAGCTGAAGCCTTGGAGTCTCTTCCATGTC CTCACCGAGAAGTATGAATGGCCGGAGGAGGAGGCCAAAGAGTTTGCCAGCTTCCTTCATCCAATGCTTG AGTTTGATCCAGCCAAACGTGCCACAGCCAAGGAGAGCCTATCCCACCCATGGCTCTACTCATGATGATT GTTGTCTTCTGACCACCACCGCAACCATTGTTTAGAGTTCCTTCGTTGTCATTGTGTGAAACCGTACAAC CTCATCTAGGTCTTTTCTCCTTCCGTTCATCCACCAAGGGTTTCTCCCTCTTTTTGGCATTTACTTAGTC TTTAGTTTGGTTTAATAGGGTCAATGACATCCACATGTCAAAGGGTAAATGATTGACGTTCAGTACATGA AAACAAACACATGGGACTACATACTTGACACAAGATATTTTTATGTCCTGTTGGTAGTAATCCCATTTGA TATCTCTTCACTTCCATGAAGTGTCTCTGTTTATATGTCACTATATTCTTTGACTTTATATTTCTAGCAA TCATTCATACATCTGTTCTCTCTTAACATTTAAATATCCCATATTCTTAGGTAGGGGTTTCTTAGTAGTA ATCAGAAAAAGGTTGAAATCAAATACGAGCCTAAACTCAAACCCAAGTTAATGTTTAACCAAGCATGAAA GCACATTTGTGACCTTTGGATTGAACACTTTTCAACAAACCTCATGTGATAAGCGCGGATGTTCCCATGT TAAGTCCTATGGATAAATCCCAATGATGGCTGAATTCTTTTTGTAAAAAAGAAGGGGGAAACCCAAAATG TCAACTTTGCTTCTGGCATCACCCATGTACTCAAACACCCCCTTGTATTTCCTGTGTGATTATTTTTGTG AGATGAATGGAAAGAATATTGAGAAGCAGTCAAGCTGAATGGATTAAATTTGAAATCTGGTAATTGATTA TAGTCTGACATCAAATCTGGCTTTTATGGTAAAAGTTATCATCAAACAAAAACTTATATTTGAGAATGGA TTCAGCTTGGTTCTAAGTGCTTATTTTGGTTGTACTAACATTGGGAAATGGGTTATCACTGTATTTTCCT CTTTCCTTAATTGTCCCTTTATTTAGCAATTTTTATGAATATTTTCTCCATTAATTTTTCTCTAATTTGC AACTCCCTTCCAGAGTGACATGGTATAATGTAATTATACCATGTATACCGAATAAGTAAAAAAAAATTTC CTATTCAAATAGAGTTACTTTTCTATTTATTATTGTTATCCCCATTCCCCTTTCCTGCACATTGCCATTT TTCCTTTCTGTGAATCATTTTCTATTTATTCGGGTGGTTTTCAATAAACATCATGTCTACTCATAGTTTT GAAAGAAATTGAATCAATGTTTAGATGGATATTTTGTAGGGGAAAAGTATTGTAGATTGTTGATTTACAC TATATCTTTGTATTTCTGTGTGCTGAGCTTCCATAGTTATCCCAATCTGTTTCAGTTGTTTCTTCTTGTT TCAAGACCACTGTGTCATGTTGGTTGTTCCTGTCATAGAGTAAATATCCTTCCAGGCAAGCGTCTAGATG TAGTCGAAGTTCCTTTTCAGCTCAGAAAGTTTAACTACCATTTTTTCTGAAAATAAGCTATTTGTTGTCT GGCACCTTTTAGCAAGGAGTATTGACATGATTTTTTCTGAAGACCTGTACTAGTGTCAGGTGCGTGTATG ACACCGCCAACTTAATACACCCAGTTGGTATGTGTTGAACCCCCATGAGCTACTAGTAACTTGGTGAAAT AGAGTTGTAGGACTAATTTCACATGTTATTTTGGATGAAATAGAGGTATGATTGTGTCGTATTTCTACCC TGTGTGTGTGAGATAGCTTTGGGGAATTTCAGGTAAACATGCCACCGACTATGAGGGTATCACGTGGACA GAAAAAATGATGGTTTATATGGAGAGGAAGAACTCTCCATTGTCTCCAAATGAAAGGAAAATTGTGAATC TATGGTGTTGGCTATCAAGAAAGGGGCAATCCATTCTGCAGCACTCTCTGTCAATATCATCAGAAATTCT TTAAAACTTTTGCAAAGTTGTTTCCATTGATAACCTGTTGTCTCAATTTGGAAAATACCTATTCACTTCA CTGAACTGTTCTATCTCTGTTTGTCTTCTTAGAAACTTGAATGTTGATTGGATATATATTTGAATATTGA AATACATGAAACAAAGCAAAATATTAAATGCCTTCTTTTAGTAGTTGAACAGGAGTGTCAAGTTATTGCC AATTGATTATCTAAATGTTTCTCTGGAAAAGAAAAAAATAATAGAAGAATGAATGAAAATAGAATACGGT ATGTACAATTGTAAGAATCTTTTTATATTTGTAAAAAGTTTGAAAGAATCCATCCCAAATATTGTAAATA GAATATGTCATTGTAACATGTTTGCGTGCGATATTTTTGCAATAATCTATTCCAAAGCCTGTTTTCAGTA GATGAAATTGTCCATATATGGAATTCTTATGCATCTAACATAGTGCAGGCTTTGTAAATGGAATAGGTTT CATATTCCCTACTCATATATCTCTTAACTTATTGCATTATGTTGCCTTCTGTTTTCAGAATGATCTATAT ATATACTGTTCTCATGTCATGTGTAAATATCATCATTCATGTAGAAAGAAAACATTTTTGGTGCCTAAAA TACCTAGAGTTTCTCAGCCTTATGAGTTGTAAAACTGCATGGCTTATCTTAGAGTTTGTCACACTAGAAA TAATTAGGTTTATAAAAACATGAGAGGGTACTATTTAGATCCATTTTATTCTCCCAAGGTCCCCATCACA CTTATTCAAAACCAACAGGAATCAACCAGAAATAACCAGAATAAAGATAATGGCATTTCAAAGTTCAAGA GTGTCTTTGACCTGGTGACTCCTTGATACTAAGTGATTTTCCAGCATCCTCAGGCCATGCTTTCATGATG CTTGCTGTTTTCAGATGTAACCTTTTTTCTCCCTCGAATGCAATCAAAATGTTTCAAATGATGTTAGGAT ATACAAATATAACAAGATCATTTCCTCAAATGACATCAAAATGCTTGTAGGAATTCAAATACAAATATCA GAAATACATTCAGAGTACAGTTAGAATGCATTTTGAATGCGTTATCTCTTATGATTTCACCTTGCAAGTT TCATGATTGAGCATAGCATTTGTGACAGGCACTCAGATTGACCCAAACACTTTTTGGTTGCAGTTGGAGT TATTGGAATGTTCATACTACTTGCAATCCTGCTTATTTCGCCTGTCATGGTCTTATTAAGATTTTGTAAC AAATTAGTACAAACTTACTTCTATTTGCTCTTTTTATTTCATTAATGACATGAGATGCAGGTATTTGTTG ATGTGTTAGGGTAACCTCTTGCAAGTTTTGAGAGCAATGTGAATTTTGGAAACTCCAAATGTTTGGATTA GGTGCAATAGTTCTACTGAGTGACCTATCATTTGCGAGGTACGTCTTCTGTTGAATGTTATCCAACGCAT TTGAAACATGGAATCATTGAAATACAAATGAAAACAAAAAGAGGTATTATACTTAATTTAACTTGATAAT GGTCCCATTTCATGAAACATCTTAGTACATTGAATCATAATTTGCTAAAAGCTACTAAAATAATGGTATT TGTTTGGGTTATAGCAAAGATGTCATAAAATGTTATTGATAACTACGTTTTATGAAATGGGGGCCTTTAC AGCTTTGAAGTTCTTATTCTATTCTTGTTCATATCCACTGAATTGCTATCCACATTTACTTGAAAATTAA AACCATTAAAATTTGCTGTCACATAATAAAGCTTTATACATTTACAATATAAGCAAAGTCTATACCTACA GTTGAAAGTGAAGATAATGTGATGAAAGTCAAATGCTTTTGGATTACAAAGCCATTTTCTGCTTTCTCTT TAATGTACAGATGTTATGTGATACCAAAGAAACAAAATTTTATGTATTAGACTATTTGGCTGGCTTTTTA CCAAATAAGTAAACGGAAATGAATAAAATTGTTTCAAGCAATGAAGAAAAAAAATCATCTTATTTGATAT CTTTTTGAGCCCTACAGATCATAGACCCTGATCATTATATCGTAGATAGAACCCTATGCTCTTAATAAAA CAGATACCAATGTGAAGAGAGTGTTACTCAAGGCATTTTGATATATTTGAAGCAATCAGTTTTCATTGCA CACATGTATAAAGGGAGAGAGAGAGCTTTAGGTAAGTTTTGTTACAATCACTTGTATGTGTACAGTACTG TGTACATAAAGAAATAATGACATATTTCAGTAGCTATACAGAGAAATATTGTTGGATATTGTTGTTAATG GACTATTTTTCATTAATAAAAGTAAATGGCTTATTGCATTCATGTTTAGTTGTATTCGATGAGTTTGAAT TCACTTGACTCACTAATGCAGAATATTAAGGATATCATGCTGATTGTTTTCTTTTAATTATTATGCCTTC TTTTCTAGTATTTTGAGTGAGTACATTATTTATTTTAAACAGTTGATCTTTGTTTTTTCATATTATTTGA TTGATGAGAATTGGAATGACAATATCCTGAGAATTCATAGGACATTTTCAATAGTATCCTCTATGTCAAA TATAAAATGTGTTGTGCTCACATATATTATGCAGAATGAATTGCCAGTTTGAATATATTTCTGTTGTCAC TCGAGTACACTTTATTACACATACATGTGTAGCATTGCATATCAGGCATCAGTGATAACATTACTTTGTT CCATTAATAATTGAATCATTATCTGTTTTATAGCAGTATACAGTTGAATATTATGTATCCTATTGTTAAG CAATGTTTGATAAATCTTTAATTTACTATCTAGAAATACACTAATGTATTGATAATTGTACAATACAAAC ACACGGCATAATAGCACCTAGCTGCATATGCTCCAATTCCCTCCTCCCTCAAATTATTGAAAGTGATTTC TAGTTGATAAACTTTTGATTGCTGTCGTTGATAAATTAGATCAGACGTTAATGATTAAAAACATATTTTA AGTACAGTTCAACGTATGACTCATCATTATTTTACAGTTTTTGTTTTGTTTACAAACCTCAAATACTTAA AGCTAATTTTTGAAATGTTCATCTGCAGGTGTAAGCAAATAATTCTCATATATGCTCATTTTCTGTAGGA ATGTGTTGAATTGTCGATCTGGAGTTCGACAATATTAAAATATGTAGTGCTGGAACAACCA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds