Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041603183.1 PREDICTED: Lytechinus variegatus CLIP-associating protein 1-A-like (LOC121410850), transcript variant X1, mRNA TACATTCTGTCATGTTCATGAATACTGTACACAATGATACTGTACATTCAGCTCAGATAATCTTGTACAT TATACATGTAGGCCTACAGTACAGTTCGATGGTAAGTCAATTTAGTTTCATGTTTTATTGCTTTGGAATA TCTACGATTTGTCTCTTTATTTTACAGTTTGTATTTGAGAGGCTGATGAAAGCATTTTCGCACAAAGGTT GGCGTGTTCGAGAGGAAGTTCTACTATGTTTAATGCAGGCTATAAATGTATTTGGTGCAAGTTCTCTACT ATTAAACAAAATTGTTCCATCAATATGCAAACTTCTTGGGGATCCTAACAGTCAAGTAAGAGATACAGCA ATCAACACACTAGTTGAGATCTACAGGCATGTAGGAGAGAAGGTTAGGATAGACCTGGGTAAAAAGGGCA TTCCTTCATCAAGGTTATCTATTATTTATGCCAAGTTTGATGATGTGAAACGGTCCGGACAAATGGTGGT GCAGTCTGAACAAAGTGCTCCTGCTAAAACATCAGCATCGCAAGATGAGACTGACAGTAAGCCTTCAAAA AAATCGCGGCATTCTAAAATCGACACCTCTACATCATCATGGAACGCAAAAGCCAAAAGTGCTGTTGCGA AGAAGGTGGCTATGAGGGCCGCAGCTGAGGCTGCTGTTCAAAAGACTGCTCCTGCAAAGAGACCTGCTGC ATCCACAACACAACGAAAGTCCATTAGTAGACCATCAACAGGTTCCAGCAGTGGTGCAGTAGATGAGAAT TTCTTCCAAGCTGCCTATGAAGATGTCCCTAGTGTTTCAATATTCACAACAAAACAGCTGGAGGATGATC TTAGTAAGATGTCTACCATTCTAAGTAATGATAAAGCAGATTGGGAACTTCGAGTGACAGCATTGAAGAA ATTACGAGCATTCATCATAGCCGGTGCAGCAGAATATGATTGCTTTGGGCAATCACTAAGGCAGATGGAA GAAGCCCTTATTTTGTCAGTCAAAGATCTAAGGTCACAGGTCTTACGAGAAGCTTGTGTCACATTAGCGT TTTTATCAATTCGTCTGAAGCGGCAGTTTGACCATGCTGCAGAGGTTGTCCTTCCCCATTTATTTATTCT CATTCAGAATAGTGCAAAGGTCATGGCCACATCAAGCATGGTTGCAATAGACGTTATCATTAGGCATACA CATTCACCTAGGCTTATACCCATTATGAAAAGCAATGCAACTTCTAAGTCAACTGCCATTAGGAAGCAAA CGTTTACATACATAAGCACGGTATTGAATGTATGGGACACACATGCAATGGAGAGGCATGCTAGCCTTCT CTGTGAGGTCATTCACAAGGGTATTGAGGATGCAGATTCAGAAGCTAGGGCTGTCTCAAGAAAAGCATTC TGGAAGTTCTCAGAGCACTTCAAGAGCCATGCAGACAAGATGTTTAACAACCTTGATGCCTCCAAGCAGA AGATGCTACAAGGAGAGCTGAGCCAGGCATCCAGCTGTACCTCCCTTGATGGCAGGCCGCTTTCACGATC ATCCACAGCCAGTTCACATGAAAACCTAAGGTTGGCTAGGGACTACAAGACTGCCAGTCTGCCAAGGAGA TCAGTTGCATCGAGAGCAAGTCGCACTTCAGATTCTTCGGACAAGCCCGCCCTCTTGAACCAACGTTCCA GCAGTGAGATCAACTTGGCGGCTGCGTCAAGGGCCCGATCACGGTACTCGTCGGCAGGTCAGAGGGCAGC CAGTGGGGCGGCAGCACGTATTTCTAGATCTAAATCAACTTCTCGGGAGAGCTTGGCTGCTACTCCCAGA GGATCCTCTCTTCTTCAAACTCCTAATGGTCGTGCAGGGAGAACACGATCGAGAATTGGGGTTTCCCAAT CACAACCTGGTAGCAGGTCTAACAGCCGGTCCAGCTCACCTTCGACAGCCTCCTCAAGATATTCCAACAT TCAGACCAACGGTAGGACAAGGAGGAAGAGTGGAATTCCAGTGCCTCGTAGTCAAGGGGCAAGCAGAGAG GCCAGTCCTAACAGATATGGATATGCTAGTGCTCGAGAGAGGCGGCAGAGTGGATCATCTCTTGGTCCTG CACAGAGAGAGCCCAAAGAGAAGCAGAACATCATGGCCCAGAGAGTCCTGGTTCCTGGCCAAGATGCAGA GGCTGCCTTAGCTGATGCTCTGATATCTGCCCAGAGAGCCCTCAGGAGCAACTATGGGTACGGTTACGAT TCTGATTACTCCGACAATTTGACCCAGAAAGTGATGCAAAGGAAGAGATATGAAAACTTTTCAGATGATG AAAGCGATGCTTCCAGTGTCTGTTCTGTAGGATCATATGGGTCGGGACCAGCAAAGATCATTGAGGATGT ATCAGAAGTCCTAAACAAGATGGCAAGTCCTGCATGGTCAGAGCGGAAAGAAGGGTTAATAGGTCTTCAG TATACCCTACATAGCAACAGAGCACTAAGTCGGTCTGAAATAAAGAGAATCACAGAGTTGTTTACAAGGA TGTTTGCTGACCCACAGAGCAAGACATTCAGCCTGTTCTTAGAGACATTAGGAGAGTTCATCATAGTGCA CAAAACTGAGCTACTGGACTGGTTATTTGTACTCATCACAAGACTATTACAGAAGATGGGGTCAGATTTA TTAGGTTCTATTCTCAACAAAATTCAAAGGACACTAGAAATTGTCAGGGAAAGCTTCCCATATGAGATTC AATTTAGGATACTAACCAAGTACATTATGGACCAGACACAAACACCTAACATGAAGACAAAAGTTGCCAT GTTACGGTACATGGAGAGTTTGACAGATGTGATGGATCCTGCAGACTTCAGTAACTCAGCAGAAACCAGG TTAGCTGTCTCAAGAATCATTGGATGGACCAAAGAGGCCAAGAGCCCCGAAGTCAGGAGGGCATCCCAAG CTGTATTGATAGCCTTGTTTGAACTCAACACCCCAGAATTTAGCATGATGTTATCTGTACTACCCAAGAC CTATCAGGAGGGGGCGACCAAGCTCTTGCGCAATGACCTGCGTATAGCATCCACCATTGATGATGAGATT ACTGCTCAGGAGTATAGAAGTAAAGCTTCCCCAAGATCAGCCTTGAAAGCTTCCCCTCGATCAACAGGTT CCTCACCCCGTGGCAGCTATGCCAGCAACGGCCCTCCAGACACTGAGTTCCTCAACTCAGAAGACATCTA TGACTCACTCCGCCGAACCACCGCTGAAATACAGAACTACATGCACAGCAGCCGCGATGATCTTGATCAT GTCGCAGTCAGCAAGGAAACGAGAGTGGACAGTGATGAGGTATTGCCTGACCTGGTGCCAGGCATAAGAG TGGACAGTCCCGAGGGCAAGGTCAAGGAGTACCTGGAGTACCGCATGGTACCTGACCCAGACTCCATGCT GTCACCCCCACCGATCACCCACAGTAGATCATGCGGGGACTACCGTACAGTAAGCGGTGCACGCTCTCCC ACCCCACAAAAAAAGCTCCCAGCTGCCTCTTCCCAAGCTAAGTCCCATAGCAAAGGCAGACCCACATTGA AAATCCCATCAGCAAGTGGGCGGGGGTCACGCAACCAATCCCCTGCTGCCAAGAACAGAGTCCGTGCACG TTCCCAGTCCCCATCTCCCCCTGCTCGTGCTAATCAATGTTTCACAGATTATGATCATGCCTCTCCTACC CCACCAGTCTTCTCTCCAGATTCCTATTCTGAACCTGCCTATAACCCCCTTCCTATGTCCACCAATGCTT TGTATCGTGAGTCTGCTTCTCCTGTCTCTTCTCGTAGAAATCATCCGGCCTCAGGGGATGGACATGGCAT AGCAGATACAATGGGTAGAATGACATTGACTGATGGAAACTATGAGGATGAAACTTTCCATGAAGATCAC CAAGATATACTGGTTCCTCTACTGACTGAACTATCAAATCACAATGGAAGGTTTGAAGAGAGAAAGAATG CCATGATGCAGTTAATCCGCCTCACTCGGTCTGAGAGCCTGTCGCTTTGGGATGACCACTTCAAGACAGT TCTCCTTCTAATGCTAGAAACCTTGGGAGATGTAGAGTCATCAATACGAGCCATGGCATTGCGTGTCCTT AGAGAGATCTTGAGGAATCAACCTGGTCGCTTTAAGGATTATGCTGAGCTCACTATTCTCAAGATATTAG AGGCACATCGTGACCCACACAGTGAAGTTGTAAGGCAAGCAGAAGAGACTTCGGCCACCCTAGCTATTTC CATTGCCCCTAGCCAGTGTGTCCGAGTCCTATGTCCCATCATCCAAACTGCTGACTGTCCTATCAACCAG GCTGCCATCAAGATGTTGACCAAGATTGTTGAATTAATGTCAGAAGCAGACCTAATGGAAATCTTACCTG AGGTGATAGCTGTTCTACTCAAGTCCTATGACCACACTGAGAGTAGTGTCCGCAAGGCCAGTGTCTTTTG TCTTGTGGCCATCCACAACATCATAGGTGATAAACTCAAAGAGAAACTAGCAGATCTACCAGGATGCAAG ATGAAACTGTTGAACCTGTATATCAAGCGTGCTCAAGCAGAAAAAGACGCTCAGACGCCTTCTCCAAGTA GTCCTTCTGCTTTATCAACTGGAAGCAGATAGTACCCATCCTAATATTAGACTTTATACACCAGCACACA CGCAACTTTGGATGGGACTATTGGTAGAGACCTGAGCATAGACTCCGAATCAGTGCACAGTCACAATACA GTTTATCAGTCAAAAGTGTATATTGGTTTCAATTACCCCCAAGTTAATATATTGTCAGCTAACCCAGCAG CACCACATAATCACCTACAGCACATGGTAATCTATTTATGGGACTGTACAGAGAGAACTAATAAAAAACT AATGAAGAATCTACTTGGAATTTTGTCTGCTTGACCTGCAAGAAATGGATATATGGTTTCCTTTAGCTAA TATTTGCATACTACTTTGTGTCTGACTGTTGTAAAGTATGAAGAAATCAATCAATTAGTCCATTTCTAAT TTATCTATTTCCACTGTTGGTAAAATATATTTTCAGATACCTTCATTAAGTTGCTGTAAATCAGGTGGAA TAGCCATAAACCCCACATATTCACATTACCCTAATACAACTCACCATGGGTCCAACTCCAGGGGAAAAGG TTACTAAATTCTACACCTTTATCAACATTTTCTTCCAAATCCATTGAACCTGGCTTGAATATCAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds