Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041603037.1 PREDICTED: Lytechinus variegatus diacylglycerol kinase beta-like (LOC121410754), transcript variant X3, mRNA CCCTCTTTCTATTTCCCCTCTTCTTCTTTCACTGCTTCGTTCTCACTCACCTTGCCATTTGTGAATCTTC CCATCCCATGATTGTGCGCTACCTGGAATCTTCCCGGCTGCTGGCTTTGAAAGTGTGCTCTTCATATTTA GTACATGATACACTCACTAATGCTCAACTGTACCGCAAGTGCTCAGAAACTCAATCTTTGTGGTCATCTT GGTGTCCTTGTCTCGTGCATGAAACTTCTTTATTTCCATCAGGAATATCAGGATTTTGTGTCTGCATTTT TTAGAGCATTTTTCAATCTTAAGTAACTTTTTTTACATATTTCATAACCAGAAATCTTGTTCCAGTCAAG ATTTTTGATAGTTTAGTTAAATCCATTCCTTTACTTTACTTATATAATAGATGTTCATAGTCTTCTGTAA TGTTTTTCAAAGATCTTTTATCTCATGATCTCAAGTCAGTAAATTTATTGAAAAAGTGTTAATTTTTTTT TTTTGGGGGGGGTATCAAAACTTCCATATTTATTGGCATTGGAAGTCATTTTATAGAAAACTCTTATCTC TCTTTCTTCCTGCCACCTTGCTGAACTTAGAGATTGGGATATGTGTAGGCTGTATTGATACAGCAACAGA TCAAAACATTCAATTTAGGAAGTGCTTGTCTGCTACCATTGACAACTGTCTCATTTTTATTTCTGTAATC AGAATGGTCTCTAAGATATTGAGTTGGATCATAAATTATTTTAGCTTTGTCAGGGACACTGAGGTAATTG TATTTCTTTACCTTCAATTCCTATATATTAAGTAACCATAGTTTATATTTACTGCACCTCTGATCCTTTC CTTGGTATATTTTTTTATCTAATTTACTTTTTAAGTATACTGTCAATATAAATGAGACAGAGAATGGAAG TTTAAAGCTAGGGTGAATTTGATAGAAAAGAAATGTTCTCTTTGAAATCACCTAAACTTACATCAAAATT AACTTCTCAGTGAAACAATATAACTTAAATATGATTAGACACATTTTGTATGGCTTTACTTATTGGTACA GGAGGGCAAATGCAGGCACCCTTCAGTGTATGCTGAATCCTATACATACACCAACCAGTCAGCAAGCTAG CCACTCGATGACGACGGTCTGGTGTGTTTAAGTATGTGAGCACCACACACATCTCTCTCATTTCTGTCCT TACCACCTCTCGTTGAAGCAGTGGTTTCAGCAAAGGAGGAGAGAGGAGATGGAAGAAAATCAGGGGAAAA AGCTGCTGAAGTCTCTCATGTTTGTTGATCATTAAGTACACATAACAGCTGCTTTTTGAGACACTACAAG TTATTTGTAGTTTGGATAGATTTATGCATTAGCACAATACCGTGGATTTGCTTATGTGTTTTGTGAATTG GAAGCTAGAATATCAGACAAGATTATGACCTTCAATAAAAGCTATTGTGCACCATGATATCTGTTGTTGA AAAGATAATGGAGCAGGATCAGCTGAAAACAGGATCTATTTACATCAAGAAGTGTATCTGAGTACATTGA CTTGCATTTATTTATTGGTGGAATTTTTTTTTCCCTTCTCATTTGCGAGCACCATCTGCAGCTTAGTGAG AATAATTCTGCAATCTTGTAAATTACCACGCCACTGCCTGGGAAAGATGGCAGTCTAACGACTTGCAATA AGTGGATTCCCTAATATCGCAGGTGCATTCCTTCTCTCTTACTTTCCCCACCCACTCACCCCTTCTGTAT CGCCCCGTCTACTGACCAAGAAATCCATCTCATTTTTTCCTTTTCCTTCAATGATATAGAGTGAACAGTG CTCCCATGCATTCCAAGCATCAACAAGCCAACCAGCTTTAGCCACTCTTCATATCTCTCTACTTGTGTGT TTGGAGAATCCTCAAAATGGCAATGTGAGGTACTACCAAGATTTCTGGAAGAAACCCACTTTTTTGTCTT CCATATCGTGGTGTGAATATATTTGTTCTACTGTACTTCAAGTTTCGGAAAGCCTTTATTTTTTTAATGC TCCCATATTTTTTCAGAGGGGGTTCATCATTGGATTGCCTAGAGTTTGTCGATATTGAATTCGTTTGAAG TTGTATAAATCAGAAATTTCTCTCTTGCTCCTTAAGTCATTGACAAATTTTGCACCACTGCCAGCAGACT CTTCATTATTTCTCATCTGAATAAACCCATAATTGACATTTAGTTGGAATCATTCAATCTTGATGTAAAA AAAACAAACTGACAAGATGCCTGCTTGTAAAGGAACATGGCCCTTCTCTCGGTCCTATGCCTCCATTGGC CAAACAGATCAAAAGAGACAGAACTCAAAGAAAGAAAAGCCAAGCTGGAAGTACCGCCTCTTTCGGAACT CCTTACGTGGTCGGCAGAAAAAGGAGGATGATGATAAGATATCCAAACCCCTTTTCGTGCCTTGTACGTC GGCCCTTGTGATGGCGCTACAGGGTCAAGCTCAGGATGTAGTGGATATCGTCATGGTAGATTCCAGAAAA ACTCTCAAGGATGTGTTAGAAGAATTCAACGGGAATGGAGTGTTATCCAAATACAATCCAGAGCAGCCCA TCAACTATGAAGGCTTCAAGCTCTTCATGGAAACCTACCTTGATGTGGATATGCCAGAAGACCTCTGTCG ACATCTCTTCCTTTCATTTGTCAAGAAGACGCCATCGGTTTCCAGGCATACCAGTAGAGAAAAGGAGAAG GGCGCTATATACGACGTTGGCAGTGCTGTCGCGACCGTTACCACCACTGCGGCATGTGCTGCCATCACAG GGAGCAGCTCTCCGATTGAAATTGCTGGACCGACAAGTGGCGGCAACAACAATACAGAAGGCAATGAAAT GACCAATGGAGATGGACAGGAGTCTGGTGTCATCACAAGAGGAAGCCCCACCCAATCGCGAAGTTCATCC AAGAAATCCAATGCCTCCAACGGAACCCCTTCAAGTCATTCCATGCGCACTGATGCACTCAGGGTCGAAC AAACCACTAATGAACATGGAGATAAAAAAGGCAAATCCATGGAGAACAACAGGCGGAAAAAGACTGCACT CTTTACTGCCATACGCAAGAGCAAAAGGAATACCAAAGACACAGAATCATTAGGAGCATTGACCTCGTCC CGAGGGTCACTCGCACATCCAGATGTCACCAATCAGGTCGTCTACATGAAAGATATTGTCTGCTACTTGT CATTGCTAGAGGGCGGCAAACCAGAGGATAAATTAGAATTCATGTTCAGGTTATACGATACAGATGACAA TGGTATTCTTGACAGCAGTGAGCTAGATTGTATTGTAAACCAGATGATGCATGTAGCTGAATACTTAGGA TGGGATGTCACTGAATTAAGACCAATCTTACAAGACATGATGATAGAGATTGATTATGATTCAGATGGGA CTGTATCACTAGAAGAGTGGATCCGTGGCGGCATGACAACCATTCCTCTTCTTGTTCTTCTTGGCCTTGA ATCAAATGTGAAAGATGATGGCAGCCATGTATGGAGGTTAAAACATTACAACAAACCAGCCTATTGTAAT CTCTGCCTCAACCTCCTAGTAGGGCTTGGAAAACAAGGTTTATCATGTACATTCTGCAAATACACCGTTC ATGAACGCTGTGTACAACGTGCCCCACCCTGTTGCATTAGTACATACGTCAAATCAAAACGGACAACGAA TCAACCAAAAAATCTGTCACGCAAGGACGCCGAGGTTTGGGGAGAAGTTCCGATCATGAACCACCATTGG GTAGAAGGTAACTGCCCTGGTAAATGTGACCGGTGTAAGAAGTCAATAAAGAGCTACAATGGTGTAACTG GCCTTCACTGTAGATGGTGCAAATTAACGCTCCACAATAAATGTGCCTCCCATGTCAAACCAGAATGTAA TATGGGAGAATTCCGTGACCACATTCTACCTCCAACGGCTATCTGCCCAGCAGTTCTGGGAAGAGTCAAT TCCGTCAGAAAATCATTGCATGGTAAACCACAACCTTCAACAGGTATAGAGGAGAGGAGAAGCACGTTAA CACCCAAAGATAGTAATGCTTCAGAAGACGTTTCAGATGGAGGCCCTCAAAGAAGGGGTGTCTGCAGGAC AGACTCAATGTCAATAGAAGGACAAGGGTTACAGGTGACACCTCTGCCTGGCTCTCATCCCCTAGTAGTT TTTGTGAATCCTAAGAGTGGTGGCAGGCAAGGAGAAAGGATCATGAGAAAATTCCAGTATCTTCTGAATC CTAGACAAGTGTATGATCTGAGTAAAGGAGGGCCTATGCCTGGGTTGAAATTCTTCAAAGATGTACCAAA CTTCAGGGTTCTTTGTTGTGGAGGTGACGGTACTGTAGGATGGGTATTAGATTGTATAGATAAGCTTTCA ATAGATCCCAGACCATCAGTAGCTATTCTTCCTTTAGGTACAGGCAATGATCTAGCTAGGTGTCTCAACT GGGGTGGAGGTTATGATGGAGGTAGTCTACCCAAGATTCTAAAGGACATTGAGGTGTCTGATGCAGTTGA ATTAGATAGGTGGCAGATAGAATTTAGCACACAAGATACAGGAGAACAAGGAGATCCAGTTCCATACAAC ATCATAAACAACTACTTTTCAATAGGAGTGGATGCATCAATCGCTCACAGATTCCATACAATGAGAGAAA AGCATCCAGAGAAATTCAACAGTCGGATGAAGAACAAGCTTTGGTATTTTGAATTTGGTACCTCAGAAAC ATTTGCCTCAACATGCAAGAACCTTCATGAAGATATTGATATCATGTGTGATGGGGTATCTTTGGACCTT GCACTGGGACCATCACTAGAAGGTATCGCCGTGCTGAACATCCCCAGTATCTACGGGGGTTCCAACCTGT GGGGAGACACACCCAGCAAGAAGAAACAACGGAAGCTAGAGAAGAAACTTTACAGGAACAGGGATAGACA TGATAGAGGTGGTGACAGCCATTCCACTGTTGGTCTTACTCAGTCAAACATTGACCTCATGTTTGCAAGG CAGTCAATAGGAGACAAGTTGCTTGAAGTCGTGGGCCTAGAGGGCTCACTTCATGTAGGTCAAGTCAAGG CCGGTATCAGGTCATCGGGTCGAAGGTTGGGTCAATGTCAGACTGTCACTATCAGGACGAAAAAACGAGT GCCCATGCAGATTGATGGAGAACCATGGCTTCAACCTCCATGCACGATATCAATAACACACAAGAACAGC ACACCTATGCAGAAAGGACCTCCACCAAAGAAAAGTTTCTCTGGAATCAGAAAACTGTTTGGCAAGGGGA GCATCGATGCAGATGAGAGTAGTGACGTGCATCTATGAGACTAGAAAGATGCAAGAGACACATCAAGATT GGATCTTTAAGGGACGCGCTCCCGGCGTTCCCTCCAATCTCTTCAAATATTGCCTTCCATTCCTGAGTGC GAGAGAGAACAAGAGTGAAAAAATGTGACAAGGTGTAAAGATGTGTTCCACCCAAATTGGAGAGATGCAG ATTAAGTGGAGTTGATCCTTTATGACTAATGGTACTGGTGGTGGTGGTGATGGTGATGATGGTGATGATG ATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATAATGA TTGTAGAGTTTGATATAAAGGGCAAATGTGGACTTCAGAGGTGGGTAGCATAACATAGACAAAGCAAGTG GGATAGAAAGGCCATCTGCATTCCATCCAATGGTTCAGAGGTATTCCACTCCGTTTTCTGATGAGAGGCA ATTCTAAGCGATTCGACACAACTCTTGAATGTATTCTAGATGTTCATAGACAGCGTTTGGTATTACTTGT AAAGAAGATAATTTTATGAGATATAGTCTGGGATGAAATATAATGAAGAACTATTCATTGTATTAAAACA TTTTATATATCTTTAAGAAGTGACAGATATTTGCATCCACAAATATATGTGCTGATTGTACATGTAATTG GTGCTGTGGGGATCTTAAAAATCTATGTAAACTCTCAGAATATTGTCAGAATCGGATGCAAACAGACTCT TTGATTTGTCAGGAATTCCACTAAGCCAAGGTATTAAGTCTGGTGTGACAGAAAGATATTTCTATCATCA GAAAGGTGCAATGAAAAGAAACATAAATGGTTTTCAAGTGTCAATGAGAGTTCATTCCATACGCGATATG ATATTTGAATAATTAACAAAATTAGTCTTCTGCAACAGACTTTTAACAGTGTGAAGGAAGCTATGTGCTC TGGTTCAATCATGCATGTTGCTTCTTTTTTATATTTTGTTATGTAAAATCCTATTTTTGTTTTGTGTGTA TATTTTGTATACAATGTGCTTGCTGGATGTCAAGACATATATAGAGAATATTATATGTATTACTGAATAT CAAGTAATTCAGGGGGATTCCTTATGCTTGAATAGTGGTCAACTTATTCTTACAAAGTTTAGTTTCAAGT GCAGGATTTTTATAAATTGAAATGAAAAGATAACAAATAAAAACAGAATCAACAAATTACCATATGATGA CTGGGCATTAAGCAATTAAAGCTGTCGTAATGAAGCTACATGTTCTGTTTATATGAAAAAAGATAGAAGT TGTTGAATATTCTGAAAAAAATATGAAAATTAAAATGATAAGATTATAATGTTCATGAAGCATAATAATC GTAGTATGTCAATACATACTTTTACACAACACTTTTGTAATACTCCATAAATGTATCTAAACATTGTGAT CCAAATATATCTTTAAGTTTTAAAGTTTTTCTATTCTTACTTTTTTAGTTTTTTTGTGATTTTAAATCAA TTTGTCAGTTTATAAGTGCTGATTCTGAGTGAGTTTGACAGCCTTTTATTTTGTTTCAAATATATTTGAT AACATTTGTAATAATCAATGTAATTTGTTCTTCTAATGATGTTTATTAAAATCTTTTGTTTGGTTTGCAG TGTGAAGTTATGTGGGATATATTAGTATCACTTGTCTTTCCATATGTTTATATGTAGATGTTTTCGACAA AGATATATGTACATTATGTTTCCTTTATACTTTTTATCAGTTTCATATCAACACCATATTCTTGAGTCTG ATGCTTCACTTCTCATCAAAAGCAGAAATATTATGGATGTCGGTGGAGGTTTGGAAGTCATATTATTTAT ATATAGATTGATTTGTACTCAAATGTTTCTATTTGGAAGAAATCACCATTGTATTGTAAGTATTTTGTTT TTATTTGAAATTATGTTAAGTGATTCTTTAATCGTGTTCACCCACATTACGAGAATAAATATTTATTTCT TGTTTCATTTTATTCAGGAATATCGATTTAAATAATGATGATACCTTGGCTCTCTGATTAATTATTGCTA TTGAAGCCTTTGTGTTTTCAATGTTGATATTTTTGTCAGTTTGCAAAAATAAAAATGTTCCACTGTATTG GCAAAGTTTTATTTTACAAGCACATACTGTATTACCCTCAGTATGTATTTCTAAAATAGACATCCCACTC AATCAATTCTTATGGGAAAAGGCCCTTTTGATACTATTATCTTTTCTCACATTTTGTTTAGAATTCTTAG TATAATCTACATCACAAAATTACTGCTTTGAAATGTAATCATAATCATCATTTATAATCGTTGACAAATA TAAAAAAAAAAAACATTATGATGCGGAGAGTTGGTATATAATTTTGTTTTCTTCTTAAGCTGGATGTTAT AATTGGTTACTGGTACTCTGAGCTTTCTGTATGATATCAATTTTTTTATTTAATGATATCAGTTGTATTA GCTTTGTAGATTCCAAAGCATTTTATCACATTATTTAACTATTTGTCTGAGCTGGTTTCAGCAATTGAAT TTTACCAATATATTCGCAGCTATAAAAGTGGTGTATATAAAATAAGAAGCATCTCTTTATGTAGATCATA GTCCTGTGTTATGAAACATTTTGTATTGTTTAACATTTTTTTTTCAAATTTTGATGAATATGGCCTTGAA GAGAAAATTTTAAGGGAAATGCCATTTAAGGTTAAGATTACATATCAACATGCTTACGTGGAGTATAAAC CACCTTGTATAACTTTGCTTTTTTTAGCTACAAGAGATTCATGATTTGTATTGATATTTTGAAAACATTT GATTATTTTTCTTTGTTGTGTATAATTTGTATTGGGCTGTCAAGATTTGAAATCAGTGTCGCTTTTTAAA AAAGTTTTTCCCAACTGCCCCCACTTTCAGGATAGTGAATAATTATTTTGTTTTCTGCTATTTTAGTATG CTTAAGTTTAGCACATTTTCTTTTTTTTTGCTCTTATCATTTTTCTTGTCAACTTTTACTCATTCTTATT CCCTATCTCTCAATACTTTGCTAGATGGTCCATTCATTCCTCTCTCTCCTCTCTTTCTCAATGTACCTCT CCTTTTTCTCTCTCTCTCTCTCTGCTTCTCACTCCCTCCTTTATCATTAAATTTAGAATCATTTGTTTTA AGTTTAGAAACAAGATGTCATACCTCATTTTGACTCATTTGAATGCACCAATGTTTTAACAAAAGAATAT TTATGTTATTGTTCTGTCTCATTTTTTTAAATTTTTTAATAATTGTGTTATCCTTTTAAAATTAGATTAT ATGTAGTAGTTTTTTTTTCAAATCACTGCCCACTTGTTCTTTGAATTGAAGTGGTATGTAAATCAAACAT AATTTAAGAAAGGGGTTTGGGTAAAAAAGATAAAATCTGTGTTTTTATTGTAGTCTTCCTCTTTAAAAAA AAGTTTTTAAGAGTGTGGAGTAGAAACAAGGCACTTGACCTTTGTTTCATGAGGCCCTGTCCACATGAAT AGTAATATTGCCTCCAATAAAAACCTTGGTAAATACAATGTGTTAGACATTGTCATAAACTTTACCATGT ATCTGTTGAACTTCATCCTATATTTCTGACAATCTTTTTCCTAGAAAAGTCTTGAGATTTGAATGCATTG TGACGTTACAAGCAGGTTTTTTTTTTAAGACTGGGTGTCATTTACTGCCCATTTTCATGATCTGATTTGT ACAGCAAGGTCTTGGCTAGAATAAAAAAAATGAATATTTTTAAGGGTATTTTTAACCTGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds