Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041601922.1 PREDICTED: Lytechinus variegatus ectopic P granules protein 5 homolog (LOC121410067), transcript variant X2, mRNA TGATCTTCTAGCTAGGACTACCGTATACTCTATATACACCGTACGAGTACGAACGTACGAGGAGCTAGGA GTTTATGTTTCCAGTTTCGTGACTGCTGTTCGTCGGCGTTTCGTTTGGCTTCGACTCATACGATAGATCA GGTTCAGAGACAGAAGTGAAATTTCATCAAATTTGCCGTTGAGGCCCTTTGTTTCATGGACATGGCCGGC TGAGGAGTGAGCTGAGTTAGGCCGGACGTGGTTAGCAGGCGCAGGATTACAGGTGGAGGAAGCCCCGGCC CAGCCCCAGCCCCAGGCGGGCATAAACAAAGACTAACTATGGCAGAGGCTGTTCGACCCAAGGGCAAGGC CAAGAGGAGGACAGGGGGAAAAAATAAAAAAGCTAAATCAAGTGATCCTCTGCTTGAAGGGGAGTCATCT GCAAAGCTGGAGTCAGAGGAAAAACCCATTGAGGAGAACAAAGAGGAAAGTACCGATTCCATCTCAGGTT CTTTACGGAAGAGAGGTGAAAGAGACCAAAGTCTAACAGCTAGTGAAGATCCTTTGAATACTGAATCTTT GAAGAAAGAAAATATTTCTTGTTTTCGAGTGTTGGGAGATGATAAACAGACTGGAGATGAAGTGGAGGAA ACAAACCAAGAAAGAAAAAGAGATGAGAAAGAGGACAGTGAACCTGAAGACTTATATTCATATGCTGCAG AATCGCTTGAGAAAGATTTGAAACATGGTGAGGCAACTGCCACAGCTTTGATGGTTTCTTCTGATTTTAA ACACAGTGGGGCAATTACCACAGCTTCGGTGGTTTCCTCTGTAATTGAGTGTCATGAAGAAGGTGCTTGT GCTGCTGAGAAAGATGCTTCTTCAGGGATTCAACATTCAAACAGAAATCAAGATAGTACTGTGCAAGGGA CATCACACAATGAAGAAGTTCTCAGGAAACCTAATCAATCTGATCTTGAGGATACAGTGGCTACTGAAAC GGAAGAGATGATTGATGAGAGCAAAGGGATGTGTGCATCCCAAGGAGATGATAGTGTAGAAAAATTTGAC TTCTTGCCATTTCCCTCTAAAGAAGCTTCCATTGATGAGTCTCTTCAGGAAACTACATCTAAAGATGAGA CTACTTCATGTGATACAGAACAACCAACAGCCCCACCAGCTGCTGAAGTTCTTACACCAGGAGACATTGA TGAAACAATTGATCCACTAAGCAGCAATCAAGGCAAGTTAGGAACACCAGTCAATGAGAACCCAGAACCT AAAGAGCAGCTTGAAGTGATGTCAGGAGCAATCACACTTCAAGAAGTGGCTCCAGGAGAGGATCCTCTGT TTATCTCTGGTTTGAAGGTTCAAGAACAAGGTGAAGGAGACATTAACAGATCTGCTGAAGGAATTAAGGA AGTGACAAGTTCAACCAACTCTCAATGTAATAAGGCTGTAAGAACAGAAACATGGTCAATGGAATCTATG CTACCACTTAACCAAAAGGAACTTGAGTACTATTACTTCAATAGCATGCTTACTCAACAAGATGCATTTG TAGAGGAATTCATGAAGGGGAACTATGTACTTGACAAGCATGAGTTTTATGAACTTGTGAGTAACTATCT TCGAGCTCGGATAAATGTAGGAACTATTCAAACTGAGATGAAAGGACAGAGGGAGGATTACTTGGACAAT GTGGAACAAATCTGGAGCTTTACACAGAATGAGATTCCTGTAAAGGGTCAGTGTCAAGATGATGTGGGTG TGAAAGCCAGCCATACATTCAAGATTGTAGAGTACCATGAAGGAAAACTGAAGGCAGTAGAGAATGCCCT TTCTCAGCTCCGCAACCATGTCCATAGTACCTATGCCCTTGTCTCATATACATCACAGCTATCCAGGCTT CAAATTGAGGTCTATATACATCACCTATTGAATAGGTCTGACCTGTTCAAAGATGTTGATAACACCATAT CTGTTGGAGCTCATTTGGTGAATACAAATTCTTCTGTGGCTCAAGGTGATTTAACCAAATTGAGACAGTG TATCTCAGTTCTGTTTGCATTCCAGCGTAGACCAATCTCAGATTCAGAGTTTGTTGAAAACTCTAGATTG TGGTTACATCGTATGGTATGTATCCTCTTGAGGATAGCAACTCTTGATGATCATATGTTCATCTTTCAAC ACTTGTTACGATGTCCTCCAGGCATTACTGAGTGGGCTACTACATTTCTACAGGTGCCAGCTCCTGTACA AGAAGCAGCTGGAAACCGCCATCTTATTAGCATGGATGATGTCCCATCATCTACTCAAGGTCAAATGTCA CATGATATCTGGGACAGCCCACTCCTTCATCACTTCGTTAACATGCTAGCTACCCTTATGGCTCCTGTCA GATACCGGGATGAGTTCTTGGCTAAGATGAAGGTTGTATCAAACAACCCTTTTTCCTCTAATATTAGTGA TGCAACCATCAATTGGACATTGGTTGATGAAGATCTAGAATCAGAAGATGAAGAATCATCTCATAATCTA CTGCTCAATGAAGCTGATCTTGTGGAGCTGTTAGCTCAATTTCCATTCACGGACTTGTTTAGTCACATTC TCTCTCTGGATAAAAGTACTGACAAAGAGTACAACATAGAGAAGGTAGATAGCCAAGATATACTGAAATT AATTGCATTCAGTTCAACTCTCATCCAAATCTTCAATACTGGCCTTGAAACCTTCAATAGATCAAGATAT CGTCAGTTTGTCAAGAGAATCGGCAGACTAATCAGGCACACTGTACAGTATGTATCTTATCATTGGACCA ACTACAAGACATGGAGACTTGAAGTTTGCAGAGACTCAGAAGGAACAATCTTACCTGGTTCAAACTCTCA CCATGAGATAACTCTACAGATGATACAGGTTGAGATTGATGAGATGTTCTTCAGGGCGGTGCAGTGTATT ATGAGTGCTCCGAGGCTTGGCACATGGCAATTCTTAGCTGACATGCCATACTCCTGCTTGTCATCTTATA TGATGTGGAAGTTACTATGGTTTCTACATCATTCTGATAAAGGAGAAGTTTGCTCATCAACCTCGATCAA TGTTAAAACCAGAGCCAGGTTAGATGAATACAAGTGGGACCTTTCAGATTCTACCAAAATAGCAAATTTT GGCAATAGGCTCCTGAACATGCCAATGTCAGAGGTAATATATCTGCTAACAACATTTGCTAACATGGCCA GTGCTAGAAGTAACAAAGAACCTGACTTCGTAATCACTATCACTAATGAAGTCTATGAGCTTGCTTATGT GAACAAATATACCAGAGACTCATGTTCTAAGGTTGGAAGGGAATTACTTGCTAGTGTGGCACTCACTCAT CCTTTCATTATCACCAACATCTTCAGTCTTATCCAGTCATCCATGGATGTCATTGGATCGATGAGTGTAT ACTTATGCTCTGAATTACCTGTGCATCTTTGGAAACCTTCTGTTTCTGATATGAGCCTACTACGAGGTTG GATTTTAGATCATAGTCCAGACTCTACGAAGAACCAACTAGCAAGGCTTATTTTATCCAAACTTGACTGG GGTTACACTGAACAGGAGGATGAACTAGTTCTGGATATCAGCCTTCATCGTAAGGTAGCTATCTTGGTCA TGGAAGCATTCACTAAACACATAGCAGAGAAATCTCAAGGAGCCTTCATTGCCTCAACTATTTCTTGGGG AATATCTGTTGTACTTGGAGATGTGGTTAATCTAGATGTATGGTGTTGGGACCTTCTCAACAAACTACGC CTCCATAGTCAAGATCAACCAACATCCATCCTTTCTGCATCAGGAGGTTACCACTCTAAAACATCAGAAG CAAGAGGAACATCATTGTCATCAGAAAGAGATTTTGCACCACCAGATTTGAATGGTGATCCAACTCTTTA CCCTGTCAACAAAGCACTGTCCAGCAAGATACCCCTGGCATGTTATATAGCTGTGGCAATGACAAAAGCA GGTCATGACCTTGAGGAATTCTTGACTAAAGGCTTGGAGTATCTCCAGAACCTTATTAGTGCTGGTTGTT ACAGGATGTGTATACCTCTGATAGGAAAGATTGTTCCAACCTTCATTGCATCCGGTTGTCAAGAGTATCT TCTACAGAGCGTCAAGTTTGTCTCTTTAGTAGAGGCCATTCTAACTGCTGATCATCAGTATACCAGAATA CTTGAGAAACTTTCCTTGTCTTTCCAAAGAGAGTGTACACACCTTTTTTCTAGTATGATTGCAACGCTTC TACAAGGTAGCAAGAAGCCTGGCTCACTTCCTGGCTTGACTGATACCATGCTTGAATTTTGGCTCATTAT CCTGACATCCTGTAAGAGTTGGCATACCAATCATGATGTATGTCAGGTTCTAGATGCAACCTTAGAGTCT GCCCTTATCAGTCACAAAGCAAGTGATGTACTGACGCAAGAAATCTTCATGACACACTTCAGGAAGAATG TGCGTAATCCTAGGGCTAGCGGTTTGCTATCATCTGTTATGTCCCTAGTCTCCTCATCCAGTCCTTTACC CACCATGACAGAGCAATACAAGAAAGAATTCCCTTGGCTTGCTTACTCTCTCATGTTAGCAGAGACAAGA TTTCTGCAGGAAAATGGGGTGCTTCAAGTCATCTCACAGGAGCTTCATGCCAATGCCAATCTGACCAATG ACCAAGCTCTCAAGAGAGCTAACCAGCAATTAAAGAGTAATTACTTGGTGAATGCAAACCAGCTACCTAT CTACCGGTGGGCTCAACTGGCTTTGGATACAGACATCATGCATCCTCTATTACCAGTTATATGGCAAATG TTCTTTACTCTTTATCTAGAAAGAATGAAGGCACCAGGCGGGACTGTAGAGCGATATAGCATAGGTTACC GCTTTTTCCAGTGCTACAGTGATGTAACTTTCTTGAAGAAGCTGAAACGTCAACTTTCACAAACTGCGGA CTATCATCATAATGCTAGTCAGGGAGACATACCTGAAGGTCACTTCTCTGAAGGTCAACCACACATGAGA CAGAAGAACACTGTAGAGGGTGCTGTTGGAGGAAATGAAGGAGTGGTTGATGGGAATAACAGCAAGGATT GTGAAGCTATCACTGACAAGGAAATTCACAAAAAGCTTCTCAAGCTGTATCAGACATTCCTCCTTTGGCT TGAAGAACCATTACTTCATGAATCAAGTTTATATCTACCTGCATTACCAGACCAGTATGACAGAGAGAAA CTGGCAACAATATTTGCTGCTCAAATGGAGCCTTGGATGGAGTATGTTGATTGGGATCGTGTGAGTTATG GAGTAGACATATTGGTAACCCAATGGCTTCAGGTTACAAGACCAACTATGTACAGGAATAATAGTCTCAT TGCTCAGGATCAGGAAAAAGAAGCCTCAACACATATTCTCAACCATCTACATCAGTATGAGAAGCCCAAA CCAGAGCCAGATGTCAAAGCCTTTATAGCTCCCATAAGAGAAATACCAGATAACGTTTTAGTGGATCATC AAGCTATGCTCCAGTTAATTGAAGGTGACCTTCAAGAGATGCTCAACTATGCCAACTCATTTTCAACGAG AGAAAGCTTGAATGTTGCATTGGACCTGAGTTATATTGAGCTCATGCCTACCCTCTATCATAATTCAGAA GTTGAGACAAGACTAGAAATTCCTTGTAGATCAGCAGTCTCTTCCAGGCATCGTTGCTTAGGACCAGCAA AGATTGTTGTCAGGCACCAAGAATGCAAGCTAAGTGATGCTGTGAAAAGAAAGCTGGATGAAAACAGAAC TGAGTACAAACAGCTATCAATAGAAATGGAATCACCACCTCCTCCAATTATCTGCACTGCTGCAGTTCAC ATTGAGAATGCCATTACTGATTTGATCAATAAGAGTCGTTTATCTACTGGGGAAGAGAAGGTGACCCACA ACCAAGTGGGTGTGGCCTTGCTATATCACCTTGCCAACAAGATGAATGATGATTGCAGGCATTATCCTCC TACCAGACAGTTTTTTACATCGTGTATTGAGATTTTAGGGCAGGAATTTGTGAGACCTTATCCTGAGCAA GCCCAACCACTTCTCCTTGAGATCCTAACCAACCATCAGCTTGCTGGTGTGTTAGCACCAAACTTTGTTC CTTGCAACTGTCCTTCATCATTTGTTCATATGTACACAGAAGTAGTTAGGGCTACAGTTAAGAACATGCA GGATCTTGCTTTTATGCTCCTGACTAAGTTTGACATAGCTTATTGGTTGGAGCAGTACCATCCCACACAT TCTACCTGTTCTCAGCTCATCACCATTATTACTGAGGCATTGGTTGCCTGTGGAGGGAGACAGGATTCAG ACTCTATACCTCTCCCTCATTATGAAGTTTACAGATCGCATCTACAGACCGTCTTTCTCTATAATTTCCC TCAGCATTATTCCTTTGTTATTCACATAGTCATGAAAGGTATGGAAGAAAAGAACTTGAAGCTGAAAATC CTGGAGGATGTCTTAAAGACACTGAACTGTCATATACTTCCACAGTTTGGAGATATTGGACCAAAACAGA TTGAGAAACTTGTACAAGAAGAAACCCTTCTCTCAGTTGGTGAGCTTGAAGAAAGCGTGGTATGGATGGG TAATTACTTCTCTAATCAAAGACATAGCAAGCAAGATCTTCTTCGGTTTGGTCTTTACAGTCATTGGAAA GATTACATGCCAACACTTTCTAGTTTTCTGGGTTATCTTGCTCTCAATTTTGTCCTGAAAGAAGCAAAGA GGCTCCAAGAGACTGATGGAAATATCGACCAAGGTATTAGGAAGCTGTGGGAATTAGTGCTATCTTTGTT TGCACCATGGGTTGGATCAGCAGAAGCTGCATCATCAACAAGGCCTGGACAATTTGATGTTGTACCAGCT TGGATGGAAGGAGATGTGGACAGTGCTTTGGTCATGGTGACACTATTTATTGAGACTACTAGCTTCATAC AGGCTCTCTTTCATAATGCCCAGCATCCAGCAACATCCAATGTACTCTCTTTGTTCTGGTCTTACTATGT ACGATGTATGGTGAAGAAAGGAGTAAGAGAAGACATTCTGTATACATACCATAGGGCAATGACTAGTCTA CCTTGGACTGAATTCTTTCCTGATGTTTATTGTATGCAATCCATGGTTAAGATGTATGAAGAAGGACAGG AGAGTTGTGTTCTTTTCTTGGCATCTATCTTCCATCGTATCCAATGGACAGGTATACTAGAGTGTATAAT CGCAAGGGGTGACATACAGACTGCTAATCTCTTTCTGTCAGCACTACTTAGTATGCTCATCATCTTTAGC AACTCACCACATATCATGCAATCACAGGGACGCAATATAAAGGTTGTTATTGCCGGAGCACATGAGTTAC ATTGGTACCTTATAGATGAAAGCTGCTATCATAGTGCCACCATGTGGCAGCTCAGGAAGAGTAATCCACG ATTTGTGTTGGAGGAACACTCTGTTGGCTCAATATTAAAGTTAATGCGAGCTGTAGGTGGAGTTGAAAGC AAGGAGCCACCAAACTTGCGGCTAGCTTCCAAACAAGCTTCTTACATAGGATTGGTTGTTGGCCTTATGT GTCAATGCTCGCAAAACAGGGAGATCAGAGCTGAAGAGTTTACAAACCCACTCCATGGTCTTCTCTATGA CATCACTATCATATCTACTTCAGCGGGTCCAAGAGTGGATTCATCTTCCCACTTGTGTTCTCTCCTCACC ACCGTGTTATCACTTCTCAATGGTTGTTCACCCATTACCGGTGCTCCTGATGCCATTCTCAGAGGACTTA CATCATGGCTTGCTACTTGTGCTGATAATAACCTAGTACTTCAAATTATCTCAGTAGCATGTAATTCCTT GGCCTCCACCAAACACATGGCAGTTATCATTGAGTCTTGCATTGATTCCTATTTTGCTACAGTGAAACCA CCACCTAATGATAAGACTCATGGCTGGGCTAGTATTGTATCAGTTCTTCAGATCCCACAGCTATCTCATG ATGAATTCCTTCTTCAATGCTTAGAAGCTGGTTCATATCTCACTTTGTACGCATACCTTGCACAGAAGCT TCCACAGTGTAGGAGCCTAGAGGAGGAGACAGCTATAAATACTAGGCTGTTAGAGTGGTGTATCAACTGC AAACCAAGTCGAGACCATGAGTACAAGCTCTTACTTTGGTGGTACAAGGCTATTGAGCTTAGTGTGAGGA TGATCAACTTTGGAGCCCCAGAGAGTAATGTGTGTCGCTCTCTCAATAATCTAGCGCCAGCCATTTTGAC ATTAGGAGAAGATAGGAAATCATCTGGTATCCTAGGAGCATTGGGTTTTGGTAGACATTCACAACTCTCT TTGAGCCCTGAGTATAGCTTCGAAGTTCCCAGTCCCTTTTACCTCTCTCGAGTCAGCGAAATACAAAGCA TGCCGACAGTCGACCAGGTATGGTACGGTATACGATATGTACTTACTCATGCGCTGGCTGCATTATATGC ATGTGTGCGCGCTGCTGAAACGTAAACAACATACCGTAATCGGCCGATGTCCTTAGTGGTTACCGTACCG GTGAGTACGACTTTCTGACAAACCTATTTATTTCTTTTATTAATGATAAATTTGTTACTTAAAAGTCTCA AGATCTAGAAATCTAGGCATTATTGTGATATTGGGAACCACCGTTCACTTCATACAGCAGTGCTTTATTC AGTCACACGCACGGTTCCCCATTTCCACCTCCATTCACTTCGTACACAAGTGCGCGTACACAAATCTACG AGTGGTTCCCCAAAACACGATTTGGCCGAAATCTATAGCCTAGCCCTAGGCCTAGGCTACTATCAAATGC TGGTCATAAGTGGTAAGAAAGTTTTTATGTTATAGGCAGTGACAGTGTATACAGCCACATACATGTGGCC ACACGCGTGTGGTTATGAAGTGAGAATATTATTTGTAGGCCTAGAATCTATGTCAACATCAGTGAAATCG GGAGATAAAACCTTCATGATGAATCTTTGAGGTTACCTTTTCTTGATAATTAGGTCAATCCAATGACCTA CCTACCCAGTTTCATTAACACATCCTTTATATTTAATCCTGTATTTTAACAGATTCAGCTACCTGCCACT CAATGCTCCAAGGCCAAGCTGTGCCAGTCATTGGCGGCGGAAGCCAAAAAATTTAGGGGGTGTCTACCTG AAATTTTGGGATGGACACAGTTAAAAATTTGGAAAAGCGCCCCCCAAAAGGTTATCAACCACCTAAATTT TAGGAGTTGCTAACCAAAAAATTTTGACAAGCAAATAATAAAAAAAAAGGGTCATCAACCTAAATTTTAG GGGGAAAACACACGTTGAGGGGTGGTCCACGGGAATTTAGGGGGGGACGCAGGAAAAAAAAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds