Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041600864.1 PREDICTED: Lytechinus variegatus calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type-like (LOC121409065), transcript variant X2, mRNA TGCAACAAGCTATGACTATGACCCAGCGCAGCACGAGTTACGTCTGTGCTCTTACGAAACCTTCCTTCGT GTTTCCCCGAGCGCAGCCGCTAGCTGTAGTATAGACATACGATCGTTACCGAAGCCTCTGTTCGCCCTGC ACTGCACTACGGACGAAGAAAGCGCATCGCGACTTAATCTCAATTACCTCAAAGTCGAGTCCTAATGCCC GAGAAGAGGATTCTCATTTTGAAGCGAGGCCTCAGATAATATTCGCTCACGTTTTAGAAATTCGTTTCGA CAAAGATTAATCCGACTTTTTGATTTGGACTGGTGAAAATCTGCTGCTGTCGGTGCGTGGTTGTGGAAGC GGATCCTTGTTTACGTTCTGGCCAGATCCCAAGCGTACATGGTTTGCCAGTTAAGAGGAAAAGTTACACG TGCATGTTTTTATTTATTTAGGAGAAAATATCTTCCTTTGTAGCATACCATTACAGCTGATAATACACGG TATCCACCTTTATCCAGTGGCGGTTGTTTCGGACATAAGTTATGGATCTAGCTCACACACGGACACCAGA CGAGGTTCTGCAGCATTTTGATGTCAAGGAAGGAGTTGGTTTATCTCCCCATGTAGTCAAACAGCGTATT GCTAAATACGGATACAATGAGTTGCCTGCAGAAGAAGGGAAGCCTTTGTGGCAGTTGGTACTGGAACAAT TTGATGACCTTCTTGTCAAGATCCTGCTTCTAGCAGCAGTTATCTCCTTTATTCTTGCTTTGTTTGAGGA AGATGAAGATGAGAAAGTGACAGCCTTTGTAGAGCCCTTTGTCATCCTGCTCATCTTGATTGCCAATGCT GTAGTAGGCGTATGGCAGGAGCGCAATGCAGAGAGTGCAATTGAAGCATTGAAGGAGTATGAGCCTGAGA TTGCCAAGGTGATCAGGCAAGACAAGGTCGGTGTCCAGAGGATACGAGCCAGGGAGCTTGTCCCAGGAGA TATAGTAGAAATCTCAGTTGGTGACAAAATTCCAGCTGATGTCCGTATCACTAATATCAAGTCCACTACT CTAAGGGTAGACCAAGCTCTCCTCACTGGTGAGTCAGTGAGTGTAATGAAACAAGTTGAACTTATTCCAG ACCCAAGGGCTGTCAACCAAGACAAGAAAAACATCCTCTTCTCGGGTACAAATATTGCTGCTGGAAAATG CAATGGTGTAGTCATTGGCACTGGTCTGTCTACAGAGATCGGCAAGATCCGTACAGAGATGGTTGAGACA GAGACAGAGAAGACACCACTTACACAGAAGCTTGATGAATTTGGTGAACAACTTTCAAAAGTCATCTCTG TCATCTGTGTGACGGTGTGGGCCATCAACATCGGTCACTTCTCAGATCCATCTCATGGAGGTTCCTGGGT CAAGGGTGCTGTCTACTACTTCAAGATCGCCGTAGCTCTCGCTGTCGCTGCCATCCCTGAGGGTTTACCT ACTATCATTACTACCTGTCTTGCCCTGGGAACAAGGCGAATGGCAAAGAAGAACGCTATCGTCAGGAGCC TGCCCTCTGTTGAGACTTTGGGGTGTACCTCTGTCATCTGCTCCGATAAGACTGGTACTCTCACCACCAA CCAGATGTCTGCATCAAGGTTCTTTTTATTGAAGGATGCACAGGGTGATACTGCAAGTTTCCATGAATTC ACAGTCAGTGGTGTTACCTATGAACCCAAGGGTGATGTGTTCATTGATGGTAGGAGAGCTGATCTTTCAC AGTATGCAGCATTACCAGAGCTAGCCACTATATGTGCTATGTGCAATGATTCAGCTATAGACTATAATGA GGCCAAGGATGTGTATGAGAAGGTTGGTGAGGCAACTGAGACAGCCCTGACTGTCCTGGTAGAGAAGATG AACATCCTAGGTACTGACCTATCAAGGTTGTCCAAGGCTCAGCTCTCCAATGCTTGCAATCAGGCTCTTC TGTCACGTTACAACAAGGAGGTCACTTTGGAGTTTAGCAGAGATAGGAAATCCATGAGCGTCTACTGTTC ACCATCCAAGGGTGGTCAGGAGAAGGGAAATAAGATGTTTGTTAAGGGTGCACCTGAAGGGATCCTTGAG AGATGTAACAGCTTGAGGATTGGATCAACCAAGATACCTCTTACTCCTAGTGTCAAGAATCAGATCATAG AGAAGATCATGTCCTATGGTACAGGTCGTGATGCCCTTCGTTGTCTTGGTCTAGCCACTGTGGATACCCC CATTAAGAGGGAAGAGATGGATCTTGAGAACTCGGCTAACTTTTCTAAATATGAGAGCAACATGACATTT GTTGGATGCGTGGCTATGCTTGATCCTCCCCGTGCTGAGGTACGTGATTCCATTGAGGAGTGTCGTCAAG CTGGTATCAGGGTTATCGTCATCACTGGTGACAATAAAGCTACAGCTGAAGCCATCTGCAGGAAGATCGG AGTGTTTGGACCTGATGAATCCACTGAAGGTCTGTCGTATTCTGGTCGTGAGCTAGATGACTTGAGCCCA GCTGAACAGAAGGCTGCCTGTATCCGTTCCAGACTCTTCTCACGTGTGGAACCCACCCACAAGAGTAAGA TTGTTGAATACCTACAGAGTGAAGGAGAGATCTCAGCTATGACTGGTGATGGTGTAAATGATGCCCCTGC CCTGAAGAAGGCTGAGATTGGTATTGCCATGGGATCAGGAACAGCTGTTGCTAAGAGTGCATCAGAGATG GTGTTGGCTGATGATAACTTCTCTACCATTGTTACTGCCGTAGAAGAGGGACGTGCAATCTATAACAACA TGAAGCAGTTCATCCGCTACCTCATCTCATCCAACATTGGAGAAGTTGTCAGTATCTTCTTAACTGCTGC CTTGGGAATGCCTGAAGCCCTCATCCCTGTCCAGCTTCTATGGGTGAATCTTGTGACTGATGGTCTACCT GCTACTGCCTTGGGCTTCAACCCACCTGACATTGATATCATGGAGAAGCCTCCCCGTAACTCTAGGGAAC CACTCATCAGCGGTTGGCTCTTCTTCCGCTACATGGCCATTGGAACATACGTTGGAGCAGCGACTGTTGG AGCATCAGCCTGGTGGTTTATGTTCTATGAAAATGGACCCCATCTCTCATTCTGGCAGCTGACTCATCAT ATGCAGTGTCCATTGGAGCCTAAGAACTTCAAGAGGCTTGATTGTGATGTCTTTGAGGATCCTCATCACA TGACTATGGCTCTGTCTGTACTGGTCACCATTGAGATGTTGAATGCCCTCAACAGCTTGAGTGAAAACCA GTCTCTAACAGTGATGCCTCCATGGTCTAACATGTGGCTTCTAGGGGCTATAGCTCTATCTATGTCTCTT CACTTTGTTATCCTATATGTTGACATCTTATCAACTGTGTTCCAGATCACCCCTCTGAACATGGCGGAAT GGATGGCAGTGTTAAAGATCTCTCTACCAGTCATCTTACTGGATGAGATGCTCAAATTCATGGCCAGGAG TACTGGTCAAGAGAGTTCTAATTACAAGGGAAGAAAATGAAGTCTTGACGACCCAAGACAGAGTTCTTCC ATCGGAACAGGGGAACAAAGAAGCAGACGTGCATTGGATACCCTTTGATACCCCATCTATCACCAACATC ATACTATGGGATATTGAATGGTTCAGATAAATAATGGAGATGAGTAGTGTATTGAATTCGCCTAAATGGA GTTTGAAGATGAATATTGATTACATAGACAAGGAGATTTGATTTCTTTTTAATCCAAGGTTCTCTTGTGA GCTAATATAAGGGGTCGTACTCCTGTTTGGAATGAAAAAAAGGTTGATATTTTACTAGGTGGAGATTGCG TGCAGAAATATCTTTTTTCTTATGCAATTTTCATAGTGAAGAATTTATAAAGTATTGTACAGAACTATTC GTATTTAAAGTTAGCAATACATAGACAACTTGTAATGAATATTGATTCCTCTTAAAATATACTGTAAGAA TATTGAGGAAAATAAAATGTAGAAATTAGATATTCATGTATTCAGTTTCTATCCAGAAGCATTAAATTCA TATCAAATGTAGAAAAATAACCACACAGTTAAAGCTAACTGCTCTATCTTTCTTATATTGTCGTTAAAAT TTTGTCCTCAATTTGCTTTTGATCTTGGTTTGTAACTTGCATTTCTTTCAAGTTAACTTCCCTGAGAGCA GTGTAAGCAAAATGTGGATGTTTTTTCATTTGCTTTATCGTGAGTGTCATATTGATTGAAACAAGAAAAA ATGCAACTCAACCCAGCAAGAAAAGTAAAGGAATTTAGAATGAACTTTTATCTGTTTTGATCTACACAGC ATTAGACAATAAATCTTGAATTGTCATATTGATTTCATTTTTTTTTTTGGGGGGGGGCGGACATTCTAGC ATTTTCAATACAACAGGAACTTTCATTATATGCCTGAAGTGCAGTTATTATTAATACTTCAGATATTGTT TGTTGCATAGAAGTTGTTTTTAAACTCCCAAAGAATGCAATATATAAGGATATTTCTAGTGTTTTTGTGA GAATGAAAAAAAAAAGAAAAAAAAAAAGATGTATATATTTCCTAGTAAAGAAAAGCACAGGTAGAATGTA TTGCAAAGTGTTTGTTTCTTCAAAATATTGAATTATAAAATTGTGCCTACACAGAAGGGATCAAATGCTT ATTGAAGTTCAAACAATGAAATTTTATTACAATGAAAGAAATTGCTTTATCTAATCCTAGAAAAAAATGA CTTAATTATCACATAGAGCTAATCCTTATATGGTGCTTTTAATGAAGTCATTGGATTCAACAACAAAATT CTCCTATTCACTTTTCTCCATTTTTTCCAGCAATACTTTTAGTGGTCTCATGCATAGATGCGTAACTTCA TTTTCAAAAAGTGATTTCAGATCTTCATCAAACACTGCCCAAATTCATTGATGCAAAAATAATGAAATTG CAAATTATTTTGATCTCTTCCCTTTTCGGGAAAGCCCCATGTGGATTCTGTTGTTTTATTATTAGTTCAT GATTTTGCCTATATATATTTGATGGTGTGATTTTCTATTTGATAAATGTAAATTTTGTGATTTTGTGAGA GAAAGGGAGGGAGAGAGAAAGAGAGAGAGATATACGAGAAAAAGAAACTAAGTGCAACATGACAAAACGT TGCCGCGCAGTTGAACTGCAACTTTTTGTACAGTTTGATCTTAGTCAAATACAGGCATTTTAAAAGTTGA ATTCAGGTAAAATATTTATCTGTGTTTTCTAAGAAATGCACACAGATGTAGTGTAATGATGTAAGAAATA TTAGTAGTTATGGTATGTATCCAATTCAGGTGTTTCTTGGTTGTACTAAGATTTGTAAAGATAAAAACAT CACATTGCATATCAAGCTATGTATAGTGAAAGCTAGATGAAACCAGATGGACTTGAGGGTTTCTATGAAA ATTCATTCAGGGATGTCACTCCTTTTCATTTGTACTTGAATGAAATTGATAAAGGATTGTGATAGTTTCT TTATTTTTAAACAATGCAATGATCTGACATGCAACTCATTTTGATATGAATAGGTCATCCTATGATGCCA AGCTGCATGTATAGTCATTTTGAAAGCTCAATTCCCAAACTCGAACAATGACGTTTAAAAAGCAATAGTA ATAGTTGGTAACAACCTATAGGAGAATTGGTATGTGAATTGATTGTGATTTTAATTCTCCTCTAATTAAC CTGTTATTACTGATTGTTTGTTTACAGTGGATGATTTTAATCTTTTTCACTGCACGTAAACAAAGAAGTT TCAGGAAGAGTTTAGGGAACTTATTTATCTAAACTCAAAATTTTGAAATTTTACTATACATGGTATAGTA ATACCTAAACCAAAACAGAATGAAATGTTAGGACATTCCTAGATATGATTTAGATATGCAGATTTAACCT TAATTTGTCACATATTATCAGGGTAATTTCATCATATGTATTTCATTCATATCTTTTACTATTTACGTCG GAAATATATTCAAGACCTGGACATAGGATTTAAAAAAAAGTAGAAAGACATTCTACTTGTTGGGGGTATT TGAATGAGCACAAATGCTTTGATATCTTGGTGCTGGTAACAAGGCTAACAGTTAACAATTCAATCAAATC TACCTTCTCAGTGGTACTATTTAAACTTTTGAAAGGAACATGAATACAAGATGCTTAAACTCCATTAAAC CAAAATGTGCATGTACAACTGGCACTCAAACTTGATGCTTATTAACACAGATTATATATATACCGGTAGT ACAGACTTTAAGTAAGAGCTATCAATCAGCTTACTATATTCTCACATTTTTAACAATTATTTAGATTATC CAATATTACACACTAAAAAAGAAATAAATAAATGCTTGTAACAATTTTTTCATTGATGATCATTTAATGA CTTTAATTATATCCTTGTGTTTCTTCAGAGCTTTTATTTAATAATTAAAACATGCTTTTGATCCGTCAGG AATGTTAAATAGTACCACTGATACGATTTGAATTAAACTTAACCAAGGATAGACGGGACATATTTTGTTT ACTCTCGGAACAGTTTGTGTGTGTGTGCTGTAGATATTCTTGGATATGAAAAATATATATATATGTATAC AATGGTAGTTTAGCTAATGTGTAAACAGTTTATAGTACATGGTTCACTTTTCCTATAACAATCGGTAGCA TAATTGATGGGTGTAAGGAAAGAGGTATTTATTTTTGACATGAATAAACAAATATCAATATATTTCATAC TTTTTTCTTCAGAAACAAATATGAAAGTTAACAGAAATATCAAAACTGGAAGACTAAATGCGTTTTATGA TTCATGAAAATAAGGGCATTTGTAAACACATATAACATGAAAAAGTAAATTTGAGAGTTAATCGAAGTGA ATAGCGGGATGAAGAAGAATGTACAATGAAATAACTGGTGGCCAAACAGATACGAATGTAGATGTTGCTC AGTGTATATAGGTGTGAAGTCTAATGGTGGATAGTATATCCACAAAGTTATTATACAGAGTTGATTCCAT GGTGGTTTGTTTGTTACAAAGTGGAGGTGTCACATTTAGACCAGGATCTGGATTAAGATATAGACAATAA AGTAGACCATCAGGTGTTTCACAAAGATGTAAGTGTGACATAGAGAAGCATTTAATGCTTGGCGCGTCAT AAAAGGCATGACTGCATTGGTCAGATCATACCAAGAGGACATGCTCTACTGCATATTAAATAATAAGATT GTGCATTTCATATATGCGTCGGCATTTAAGTGCAACTCTCAGGTCATACTTGAATCTTTGTGAAGCACCT TCCTGGTATTCTAGACCCCAGGGTCTGGGCCATGAAGGGTCTCAAGTTCGGACCAAGATCTGACCAATAA GCTTGATCAGTCTTAACCCAGGGCCAGGCATAGGTTTTGACTATAGTCTACATGAAGATGTAGACTAAGG CCTGGATAAGATGCTAGACCAGGACTTAGTCCAATCAGGATTAGGGATAGCCTAGGATCAATAGAGTACC TTGTGGTTATGCTGCCTTACGATATAAGAGTGTCTTTTTTCTTCTGAAAATACTTCACCTGAAGTGATAT TGTAGAGTTGCTGCTGCGTTTTGTGTTCTATAGTTTTGGGTTGTAGTTCACTTTTGTCATTGGTATTTAT TTCATAGTTCCATCTGAGGCCTTACTGAATAGGAGTTCATCAAAATTTATTTTAACAGTGTAACGTTTAA AGTCACTGCAAATTCTGCACAATATACCATTCAAAGATTTTGAGAATAAACCTCACGTAACTAGATAAAT TATTTTGAAAGGTCATTAATCACTAACGGTGAAAAGTAGTTATCATTTTGTTAAATAACATAAGCTTTAC AAAAAAAGGAGTCATTATTTTGTGTGGAGGAAGGGGAGATATAAGCCAGATGCAGATCCAGTTGGATTAG ACATATTTCAGGGACCATATTGTTTTTGCACAGTAGTTGGCCTCTCAACTGTTGTCTAATATGGCTGAAT CTGCTCCTAGTATAGGCAGTTGTTTATATTGATGATATTCATAGGTCCTTTTTAAATATGGGATGGGCAC ATTTATTGAACTTCATTATATTGTGCATATAGTGAAACATATACACTTTATCATACTCTAGATTATTTTT GCAGTTGAATTGCCTTTATTCAGAATTCATTGGAACAGTTAGAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds