Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041599775.1 PREDICTED: Lytechinus variegatus cytoplasmic tRNA 2-thiolation protein 2-A-like (LOC121408341), transcript variant X2, mRNA TTCACATTCTCTACAACATCGTGGTGATGGTGGAGGTAATCGTAAACTCTTAGAGGACGCATGACTTACC GAAATAGACGCACTATTATCCAACGTTGTTTTCGATTATATTCACTTTGTCTACAACATCGTAGTGTTGG CGGAGGAGCTCAACTTGTATGAAGTGTGAAGAAGCAGCTGTTGTCATTGCAAGAGTAAAAGATGCCTTTT GTAGAAATTGCTTTTTAGCTTACGTAACCCATCGCTTCAAAGCTACCATAGGAAAATCAAGATTGATACG TGACAAAGAAAAGGTTCTAGTTGCATTCTCTGGTGGTCAGAACTCGTCTGCAGTGGCTCGATTAATTCAT GAAGGACGATCAGAGAATCAGCATAAGAAATTCAGATTCATTCCAAGTCTCATCTACATTGATGATGGGA TTATCATGGATCAGACTGCATCAGAGAGGAGTGCAAACAGAGAGATTGTTACTAAACTTATGAGTGCATA TGATATACCTTCATATGTTGTTCCACTAGAAGAGGTTGTCAACATGAGACATTCGTATGAATCTATTCCT AGAGGTAAAGGTAATGATGATGTTGCCATGGCAACAAGACATCTTAATCAACTCATTATAAATGATGTAG ACAGTCAAAGATTACTAGAAATTTTGAACAGCGCCAAGTCACTGACGGCAAAAGAAGATCTTATCCAAAC TCTAAGGCATAGGCTTCTTGCTGACGTTGCCAAACGGACTGGCCATACCAAGATCATGTTGGGTGACAAT GGAACCAATCTAGCATCAAGGGTACTCTCTGGTATGGCGCAAGGTCGCGGGGTCACCGTTCCACTCCAGG TCACGTTTGCAGACAATAGAGAGGGGGACAATACATTTGTCAGGCCTTTAAGGGAGTTCCCTAGTCGTGA AGTTGCACTGTACAACCATTTGATGGGTGTAGAATCTGTGTGTTTGCCCACCCCAACAACCAAGGCAAGC CAGTATGCAAGCATCAATAAACTCACCAGTGAATTTATAAACGGTCTACAAGTTGGCTTCCCCTCAACCG TTTCAACTGTACTAAGGACAGGAGAAAAATTGTGCACAGTCTCGTCTTCTGGAGATGGGGACAATTGTAT CATGTGCAAGGGTCCCCTAGATACGGATGTCCCAGCTTGCTCTGCCCTGAAGTCTACCCAGCATTCCCTA GCTGAGCTCACCGATACAGATAAAGGAGGGCTGACACATTGTAATTCATCAATGTCTTGTGAATCAGCCA GCGATCAGTCATCGTCAGAGTGCTGTGGGCAAGGTGATGGTAGCTGTCATAGCACCAGGAAAATTATATC ATTTAGAGAAGTGTCAAGGTGGTTGTGTTACGGCTGTAGGATAACAATACGAGATATGAAAGAAGTCAAT TCCCTCCCGGATTATGTTTTAGAGGAAGCAGGAAGAAGGCAGAGGAGGTCTGTGATGAAAGAAGAAATCC AAGACTTTTTGCTGACGGATGAAGACAGATAACAAACAAAGCAGATCATTCATTTGCATTTTCATCGTTA GAGTAATCTTTGAATTATATAACAGGGCCGGTATTCCTTAGAGGGTTAAAGGTCAATTAAGTCAACCCTA ACATAAAGTTAAAGTGAATAAATCAAGAAAAGCAGTGAATATTTTGTAAATATAGGATGTGAAATAAGAA AGCTATGAAAGTTATGCTTAATATCACATAACACTTGTGTGACCAGCACAGAAGATATGCAGGTGAGAGA GTTGATGACATCATCACACTCAATATTTTTTTGTACATGATAATATTATGAATACAAATTTTTTTTAGAT ATGATTATATAAATAAGGTCTTGATTGAATCAATCACATTACTGGTAATTACATCAGAAATTACTCCTGT TCTTTGTGCAGTCTATCATGTTTCACATTATAATGAGGAAAGAAAATAGAATTTTTCATATTTGATTTGA AATAATACAAAAGGAATAGTGGATGTGTGACATCATCAGCTCCCTTGGTTGCATCAGGGTAGTGGGAGGT TCCTACTACCCTGGTTGCATACTACCCATGTTGTGCATATTTTTATGTAGTATGTATTTAACTTCTTGTT ATCTTTTCAGTCATTCACCTTCACTTGTTTACAAACTCCCCCAATGTCATCTAAGAATTAAAAAAAAAAC CAATGCCATTTAACTCCTAAACCCTGACCGTAACAGACCAACCCTCAGTGAGTCAGCCAACTTCAAGGAA CGAAAGTTCTAAGAAGTATGGCTCTCACTTCCAGCCCCGGTCACTTGCACAGAGCATCACCACACCCCTT ATAACAGAGAAAGTTTGATAGACAGTTACCTGAAGACCAATCGGAACAAGGTTAGATCACTCCCACCTTA AATTGCTACACCCCCAAAACTAATGATATAAATAAGACTTCTTGATGATTAGAAAGATATAGCATACTAG ACCCACACTCATCCATATATACTGACTGACTGACTTCAAGACTTAGACGTCCATCCAATATTATCTTAAC TTCAGAATCTCAATCTAATACTTCAAAATTATTATATTCATCATCTCCTGTTTTATTTGAATATTCATGT ACTTTGAATTGTAAACTGTAGCTGAATACTGATGATTAAATACCCTGTGATTTTGAACTGTATTACTTCA AAGTTTCTTCATTACGCTTCCCTTCTAAATTATAATTACCGATCCCAACACGACAATATTGTATTATGAA ATTAAGGGAAAATTTTATGAAATTGTCCTTGCTCATCTCTTCATGTTAATACATAAGATGCTGATGAAGT TTGCAATGTTATCGTTTAATCTACCTCTATTTCACTTAATTTAAACAACTTGTTGTTGAGGTGGACTTTG ATCTTTTACAAAGTATCTTGCCTGTCTTAAAGAAATACTTATTTTCTTGTAAGTTTCACTAATTCCTACA ATTAGTATTGTTCATTATTCCAGTGCCTGTCTTAGAACTGCAATTGTTTGAATGATGTGAAATTTTCAAA TTTATAATTTGTCGATTTTATTTTACGAATTGATGGCACTGACTAAAATGAAATAATTGTGTTTTTCTCT CTTTTGTATGAAATCATTTTCAAGAATCGAAAGGGCTGAAAATATTAGAATATAATCATTGTAACTTTCT GATATGTAAAATAAGCATTCATATTACATTTTTTTTAAGAATGATAAAAAGATCACAATAGAAACTGTTA AATTTGCAAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds