Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041597413.1 PREDICTED: Lytechinus variegatus EF-hand calcium-binding domain-containing protein 6-like (LOC121406372), mRNA GTGTCTGTGTATTAAAGACTACGTCCGCTGGCAACGCAATATCGACCGCATCTCCATTACACGTACACAC ACTCCCATTAACACACACACAATTAACTTCCTAGCAACGATACACAATGCATGAGTGGACGACGATCGCG GGGAAAGGAACTTGTCGCGATCTTGAAGTTGAACTCTGAAATATTCATTAAAACTGTGTTGATTAGGCCT ATGATTTTGCTAATGGAGGAGGATAACTTTTAGTAATGATTCCCTGATACAAAGATGGAATAATCAAGTG CTCTTTTTACCCTAGTCTTCAAAGCACACTTGTCACTTTAACTGAAGTTAAATTACACCGCAAGTGACGA AATCAAGACGAGAAGAAAAAAATTTCTAGCAAGATGGCGAGTCAAGTCGCACAACCGACAGACTTGACTC TGCGCCCAGGTACAGGTATCCTCTTCACCCCAAGGCAGATCCTCAAGACAGCCAAGCATTCAAGGTCAGG GAGCAAGTTGTCACGCAAGTCGTTTGACCTTGGATTGACCCCTTCTGGGAGAGCTGCATCATCAAGTCCC AACCTCAGTCCACCTCTCCCTAGTGCCTCTTTGGATGCCAAACTCAGTGTGATTGAAGTTGAACAGATCC TGAGAGAGCAAATCAAGAAATTCTATACAGATCTCAAACAGGCATGCCAAAACTATGACATTGACCAGAG CCTGACCATCACAAAGGGCGAGTTGCGGCGTGTCCTCGACACCTTTTGTCTGCCGATGACCACCGATCAG TTCAATTCTGTCATGGCCAAAGTTCCGACCAACACCAATGGAACGGTCAACTATTGCATGTTCCTTGACC GCTTCATAAACACCGGAGCCGTCTCGAGGGAATCTTGGAAGATGGGATCAGGATACAAGTACAGCTATAC GAAATCTCCTGCTGACATGGGTATAGACGTCATCGAACGTCAGCTCAGGGACAAGATCGCTGTCAACACC AAAAACTTCATGAAAGCCCTGCGCCTCTTCGACTACAACCGCGATGGCAGGATTCAGAAACACGAGCTGC GTAAAGTGATTGAAAACTACTGCTTTAGAATGACGGACGAACAATACGATAGGTTGTGGGCTAGATATGA TTTCCACCATAGTGGGATAGTAAACTACTATGAGTTCCTACAGAGATTAGGTGTCTTGGTCCAAAAACAT TCAAAGGCCTTCCCTGAACATGGAAAATTTGCACAAACTTGGAACCAACGGCAAGATGACCGAGCCAAGC ATGTAGAACAAATGGCAATCATTAACAGAACAGATGATGCAGTGAGAGGGATGAGCTATAAACAAATTGA AGCAGAATTCAGAAACAGGATGAAAGATAATTATGTGAACATCAAGAAAGCATTCATGGCGTTTGATAAG CGTCAAGACGGATTCATCACCCTCGATGATCTTAAGAGTGTTCTCATTCATTTCACGCTCCCAATGTCAG ATCAGCTATTTGCACAACTTATGGAAAGGATTGGTTTCAAGGCCTCTCACAAGATTCCTTGGGAGCACTT CCTGGAGAAATTCCTTGATCCTCGGATAGAAGGGAACGGACAGACCATCCCAATCAAGTGGAACCACAGG GTCAACCCCATACGAGAAGGGGATGGGGAGATGGACGCTGCTGAGATCTTATCTTTGCTTCACAAGCATG TCACCAACATGTATCCCTCCATAAAAGAAGCTTTCTTGGCATTTGATCAGAATCGTGATGGAAAGGTGAC AAGGAAAGAATTACGTAAGATCATGGACAAGTTCACTATACGACTCACCGATGCCCAATTTAAGGTCATC GTAGAGAAGCTTGACCCTGAGAAAAACAATGCCATCGACTATCATGACTTCTTGGGACTCTTTGAAGTCA GAGAAACAGAGGAGGGTCACAAGTGGCTGAACTCTGAGCACAGATGGAATGACGTCGCGCCCGCCAACCT CGCCTGGGAGACCATTGAAGAGATCCTGCGGGAGAAGATCGAGGAGCACTGGAAATCGATCAGCGCCCTC TATAAACAGGCTGACCCTGCTGGCACCGGAGCCATCTCCTTGCCCCAGCTCAGGAAAATCCTCAGCAAAT GTGTGCTACCGGTCGCAGAAGATCACTTAGAAGATATGTGGCTGCGATGTGAAGAAACAGATGGCAAGAT CATGTTTGGTGATTTCCTGCAGATGTTGAAGGTCGAAGTGTCACCCGGTGACCTGGTTGGCACCAGTACC CACATCCAAGTCTTGAGTGACCTCAATGAACAACAAAGACAAGTGGATATAGATACAAGATTGCACCAAA TTCAAGTGAACGCACTGAACCGCACCACACTCATGAATGCTGACGAGGTCATACTAAAGCTGAAGGACCG TATGGCACAAAAATCAAGCAAACTCAGAGATAACTTCTTGAGATACTGCAAGGATCGACGGGGCAAGCTT TCCAAGAAAGAATTCAGACAGGTTATTCAGAGTTTCGGAATGTACATGGACGACGACCAGTTTGCCCTGC TCTGCAAACAGCTTGGCTTCGACCGGGGATCCCTCACCTATACCGACTTCATTGACTCCTTTGAAGACAT GAGGATCGGTGGCCCGGGACAGGAGATCACCCGATCCCCTAATCATTGGTGGAAGAAACTTGAAAGTCAA CACATGTCTGCAAAGGAGATGCTCGCTAACCTTGGTGATAAGATGAGGCAAGCCTTTGGGGACTTGCGAT CAACTTTCTACAAATTGGACGACGACCATGATGGCATTGTCCGTCGACAAGATTTCCAGCGTCTTGTCGA TCAGCTCATGTTCATCAGTACGGAAGATGAGTTCAACAAACTTATGAGTGCCCTCGGCATCTCCAAAAAG ACTAGACTCAATTACCAGGAGTTTTTAGACCTTTTTGAAGTCCGTGATTCGCCGGAGGGTCACAAGTGGT TAGATTCCGATCACAGGTGGAACGCAACAATCGACCCCGCCCAGCTTGCCGCAGAACAAGTCCACGAGAT CCTTGCTGCTAAAGCCCAGAGACAGTATCACGACCTGGCCAAGGCGTTTAGGTCCATCGATAAGAACGGC AATGGCGTCATCATCAAGAAAGAATTGAGAGATCTTCTGTATACCTTCATGTTACCGATGACCAAGGATG AATTTACAAAGCTTTGGGCCATATACGATCCAAATGGCAAGGGTTACATCGACCATCAACACTTCTTGAA GATGATGGGCAAGGAATTTGCTCCGGGAGATGACGGAGGTGTCAGCAAACGCATCACACAGGAATCCTCC GATACACTGGAGAGCCACCATCAAGCACAACTTGATAAACAAATCAACATCACCATCAACCAAGCGTCAA AGGGAGCCTTCATCTCGGTGGACAAGCTCCTGCAGGATCTCAAGGACAGAATGAGAGACAAGTACGGCAC CTTCCAGGAGGCCTTCGCTCAGCTTGACAAGAGCAAGACCGGTCGGATCACCATCACAGAGCTCCAGGAT GTCCTCCTCAGTCATAACTATCTGGTGGATGATGATACCTTGGAAAAGTTCTTGAAGAGGATCGGCCTAC CCACAAACAAGAGCACCTTGAACTATGAGGAATTCTTGAAGGCATTTGATGAGGGACGAGAGGAGAGGTA TCAGAAGAAGAACCTACCCGAGGTCCGTCCCGAGATGTTCTCCGGTCTTACCTCTGACAAGGCCCTGCGC AAGCTGAGGAAGCAAGTGCAGCAGAATGTCTCAACCTTACAAGCTGCATTTGGTGCCTTTGACAAGGACA AGCGGGGTCGGTTGAGTCCCGGTGATTTCCGTCGAGTACTGGACCACTTCTGCTTCAAGATGACAGACAA GCAGTTCAAGTCGCTGATGAGCAAGCTGCGGGTGAACTCTGACCTCACCATCAGTTACCCAGCATTCCTT GAAGAGTTCTCAGCCAATGAACAAGAGCTTGCTCAGAACTGGATCGAGTCTGTCCAGAAGAGCGACGCCC AGAACAACAACCACCATTCGCCGACAATGGACGAAATCAAGCAAGACCTCAGGCAGCTGGTCAAGGCACG CTTCTACCGCTTCGCAGAACGTTTCGCCGAGATCGACTACGCCAACATTGGCGTCGTCGCTCGTGATGAC TTCAACGCCATCCTCAATGAGCTTGCCTTTAGACTGAGCATAGATCAGTTCAACAAACTGTGGTCCTCTT TCGAGCTCAACTCGTACGGGAACCTGGACTACCAGGCTTTCTTGAAGGAGTATGGCGAATGGGAAGATGA TGTGTTCCAGGAAGGGGATGAAGGCTTCTCCCAGACCAAAGGAAGTAGACCTGGATCTATCATGAAAGGA CCTGGAACTCCTCTAGTACCCATGACACCATTGAGCAGGATGTCCTTCACGCCTGCAGGTCGTAGGTCCA TGACCCCGCTGGTCAACGCAGAGAACGCGGAACACAGGCTAAAGAAACAGATCCAGAAACACTGGCAGGA AGTCCACCGTCTCTGCAAGCTCCACGACCTCGACAACTCGGGCGAGGTGGAGGTAGATGCTTTCAGAGAA ATCTTGTCACAGTTTAACGTCTCGATGACCGTGGAGGACTTCAGCAAGCTGGTGACAAAGTTTGATCTCA AAGAAAATGGAAAGTTTTCATATCTGGAGTTCTTGAAACACTTTATGTTGAACCTGAAGAAGATCAACGA GGAGCCTGAACATAGAACACTATTAACCAGAGAGAAGATACACCAGTCAAAGATTGTAATCAAACCTGAA AGTCGCATGACGGGCGCCACCATGGAGGCCATGCTCCGAATCCGCGACACCATCGTGAACAACTGGAAGA AGATGCGACGCACGTTCCGCCTCCTCGACCCCACGGCGGACGGCGTCGTCACGACGAACCAGTTCCGCGA CACGCTGCGCCAGTTCAGCATCAATCTGTCGGAGGAGGAGTTCTATCAGCTGACTACGTACTATGATAAA TCCCTGCAGGGGAGAATCCCGTATAACGATTTCATCAGGGCGTTCTTGCAGTAAACTCGATAGCAATAGA CGGACATGAAGTTTGTATGCTCTCCTGAGGAATTTCTCGCACGAGATGTAGGAAACAATTCTTAGAGAGA ACAATTTGCACCCCCTAAGAGATTTCATGGGTAGGAATAGACATAAGTTCTCTGAACTTTCTTGAGGTTC ATACAGAAGTGGAGAATAGCAAGGAAAGATGCCCCTTTCCTGTAGCTGCCATCGTGTGTGTGTACATGCT TAAGGAAAAGGGAGTTTCAAGAGGAAGTAGACCCAAAAGTGAGAACTTGCTTTCGAAGGGAACCAATCTG ATTTTTCAAAAACAAGAAGGAGATTATCATTGGTACTTTTCACAAAGCTCATTGATCGATTGTAGGGCTG ATCTTTGTGCTTGATTGCATTAATCACTATGTGCAATCAAGCATACTAATCAACAAAATGATCAATTGCT TAGGTTTGTGAAAGGTGCACCTGGTTACTAGAAACATCGAGCCTTTATTGGAAAGGAACTCAAATGACTT TTTAAGCACAAACCCAAGAATGGCAGAAAATCAGTCATAGTGAAGAAAGTTTTATTTTTGCAGTACAAGA AATTGCCCCAAATCACTTTGTAAATATTAATCTTCATCCTCAAAATTCTTGCTTTTTGTAGTAATTGAGT AATAAAGGCTTGAAATTAATGAAGCTTTGGCATATGTTTTATTTGATGAATGTGTCATATTTTCAGGATA TCTTTCCTTCAAGAAGAAATATATATCATTAGTGGACTGTTGTGACTTCGGCAGGTAACACAAAACTTCA AGAGCACTTATTGTACATTATTTTTCATGATTGATTACATTAAGCTTAATGTACAATCAATCCTTAAGAC CTGAGTATAATTGATTTTAGAGTGTTGTGATATGGGGTCCAGATAATTGTTTTCAAAAGTACCTCTGCTT TGATTGTAGTACTATCATCTCAGATACTGTATATATTCAATAAATTAGATCACTGGGGTCTCTTATCATA AATCTTAGCAATTGATTGCAGGGGATGAATTCTATGATTGATCATGCACAATACTCAATGCGATCAATCG TAGAAATCATCCTTACGATCAATCGCTAAGCTTCATTTTACGGGGCCCTGTGATTTTGTAAAAGTCATTG AGATGGTACTGGTGATGTGCTGCACTGACACAGACAATCATATATCTGCATAGCTCCATCTATTGACCAA GAAAGGCCAGTCTGATGTAGACAGAATATTCAATATATCTTACAGAAAGATGATTTGGAACTATTATTAT GCATACATTCCTATATATCATATATAAATAATCCAGAAGATGTACTTTGTGTTACTAGTATTATACAGAT CAAATGAAAGATCAACATTTTCCAACTGAACTTGTATGAACGACAGCGCTATTTGGTTATATTATCTCTG TATGATCCACCATTCGTGGGCATTTTCCAGCTTCTATTGTAGTGCACAAACAACAAGGAGGCTGACATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds