Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041596679.1 PREDICTED: Lytechinus variegatus uncharacterized LOC121405735 (LOC121405735), transcript variant X1, mRNA GTGTATTAATTGTTGTACTGGTGGTTACTAGCAGGTTAGTGCATCAGATAAACATTGCTTACAGCGTGTA AGTATAAAAAAGGAGACTTGAGTCGGGATCTTTGGACAAATATTGATTTGCTGTTTCCTTAATTCTACAG ACTGATTGGGTGTGTTTTGTTTTGGTATAGTGAGTCATGTCATCAAACAAACATAATGTCAACCACCTCT GTACCAGCCTATACTGTACTAGGAGTGCAAGCAATCTGAACCAGCTACGCAGCTATCCTCAGCCTTCTGT CATTTAAGACGGGCGGGCGGTGTACCACTTCTGAATGACGCATTCTTTTTTCCGTCATGATTTGCTGAAC TTTGCTTCTTTAAAGAGCCGCCGCTGTCTCCCTTTGAACTTTGAAAGATTCCATCAAGATGACCTGAGTA GAAGATTTCCTTGAGAGAGAATTCCTAGGATTATCAAGGATCTAACTGACAACAGTTCAGCAGCTGCCTC TGCTGCTGGTCAGCTGGCCAACACTAAAGCCCATAGAAGCTGCCTTACAACCAACCTAGGGGTGGACAAC ACCAAAGCCCATTGAAACTGCCTTAGTTACAGCTGGTCAAGACTAGAATATCTATATTTCAGCCATTGGG AGTGTATCCTTGCCAGTCGGAAGAAAAATTGACCCCCTGATATTCTTTTATGATTGACAACAACATCAAC CAATCACATGTTGAGGAAGCTGCAGACCACACCCACCAGTTGCCATGGGTAACGACCTCCACTGCTTGCG TCCCAAGAATGGGATGGCCGGTGGGTTGGAGCCTAACTGCTTCAAGGTCCGCAATGTGAACGAGTCGGGT CACGTGGTCAATAAGGGTTACCTAGAAGTGACACAGACTGATCTCATTCTTCACGTCGTCAATGCCGATC CTGTTAAATGGCCGCTGAGATGTCTTCGTCGCTATGGTCACGATACCAACCTCTTCTCGTTTGAGAGCGG GCGGAGATGCGCTACTGGACCAGGTATCTATGCCTTCAAGAGTAAACACGCTATAGAGATCTTCCGCTTG GTCCAGGAGAATGCACAGCATACCGACGAGAACACCAGCTCAAACAACAACCCCATCTCGAGGACATCGC GCCAACGGAGCCTCAGCACAGAAACCGCCTTACCGCCGGGCCAAACCATGAGTCGTGCAAGCTCCAACGC CTCGGGGATGAACGGTGTAGCTCATGGTGTCTCCAATGGTGGTGTTTCACCTCATCCCAGCGTTAGCTCG GACATCTCGTATGCGCCCCCGACCAGTCCTCGTCCCACGTATTTCAACGTTGATAGTAACAGTAGTTGTA GCCCGAGGATTTCCCCTATATCTCCGACCATGCAGTATGTTAATACAATACCTTTTGGTGATACCTGCAT CCCGGAATCTCCTCTTGAAGCGACCCATGAGGACTCTCTTATGGCTGATGGTGGTCAGGGAGACACAAGT CAGGATAGCTTTGGTGATCCTGCCCTCAATTATGCAAGATTGAAGCTACCATCAGATGAAGACCAAACCA AGGTGGAGAAGGACAAAGACAAGGTCAGAGGGGAGAAGGACGATGACAAGGTCAAAGGAGACGAGGGCAA AGACAATGCCAGAGGGGAGAAGGACGATGAGAAGGTCAAAGCAGAGAAGGACATTGACAGGGTCATGGGG AAGAATGGTGAAGGCAGGGTACCACTGGTGGATCTTGACTCCGAGGGACAGGATGGAGGTGAAGGAGAGA CAGAAGAACCAAAGAAAACAGAGGAGGAGAAGATGAATGAAGGAGTGTGTGAAGGGAAGGAGAATCCAGA AAGAACATTGCTTGGAATCCTTGATGATGAGGGTCAAAGTAAGGATCGCTCACAAGATGTCCCTGATGGT TTGATAAACCATACGGATGGCAACACCAAAGATGAGTTGGACAAAGTATCTTCTACATTCAATGATTTCA AAGACGATGATGATCCTTCCAAGAAGGAAGTAGTTGATGATGGAAAGACCGATGTTAGCCACGTCATGGG CAGTGAGGGGAAAGACAATACCAGGTTGAAAGTCAAGAAAAATGGAAAGCGAGAGGTCAGTGAAATGGAA ACTACGGCTTTACTACAGGATGTGGCAAATGGCAACATCCGTTTGAAAGATCGCAGCATGGAGTCAGATT CCAAGTTAAACATTCTTGTCAATTATGCAAATCTAACAGAACAACAGCTCCAGGACGTTCTGCAGAAGCT GGAAATGGGTCGCAACGATAACATATCCCCCTGCACCGTATGCTCCAATTCATCCAGTAACGCAAGCCAG CGCGTCTCACCGCTTTCCTACTATGCAAATTTAGACACGGCCGGTGAGCTCCCACCCAACTGGCAACCAA ATTTTCAGTTCTACCCGGAGCTCCGTACCCCTCGCAGCACGTCCAGTAAAGGGAGCACAGGATCCGAATT CACATTTGAGCTCAACAGAGGGAGCTGTTCACCCGTAGATCACAACTACGCCAATTTGAACTCGTTGCCG GAGGTGCAGCCGATGCGTCATAGTCTTTCAGGAAGCAGCAGTGGGCCTAACGGAGCTGGGGGCTGGATGG AATTGCAGCCTCCACCTAAAGGCAAAATGAACTACATCCAGTTAGACTTTGATGAAAATGATCAACCCAT TGTCCACAATTTAAAAACCCTTCACCGGTCCATGAGCTCCAGCACCACGCCGCCCAAAACACCAGTATCG ACTCCCACAGAAAGCGCCATACCAGGGACTAAGACAGATATCTATGCCAGAATAGATATAGAAAAGACTG TAGCGCTCGCGAATTCTCACAGGCACGTGGAAGGAGACCCGGATATTTCAACACGAAGGACACGACATGA CGTATGGACCGACAACAAAACACGATGATTTCATTTGGAAATCATCCTGCCTAAATTTTCAATCCATTTT TTTTAATTTCCTAGTAACATATGGCCAAGTGCCTCTAAATAAAAATGGGATTTTGAAAGAATCTGGCTTT ATACATTTTATATGGGATTAGTAATTGGAGCAAGTATAATAGAATTCAACTCTTTAGACTGTTTTGATAT GTCATGAACATGCACTGTCTTGTACAAATCATTAGATCACCTTTACTTCTTCAATGCTTGATATGTTGTA GCCAAGTAAAATATTGAATGCAAATTGGTACATTTCCTCTTCGTCTACTAGCACTTGATCTGCTTTACAT GTAGTTCTTCTACAATCAGTGTGTCTATTATAAACTATTTGCTATTCGGTCTGAGAGCCGTTTATCCCAC TTTTACCTTCTTTGTCTAATTTCCAGTAAGGCTATGCCTATTTTGTCTAATACCGGGGGGGGGGGGGGCA CTCAGTATATAATGCGTGGTGGGTTTGTGCCACGGAGGGGACCCCCATTTTTACACTCAAATTTCCGTTC CAAGGCATAGCATTTTCATCTTATTGAGAAAAAGAACAAAGAATGCTGCTCCAAAGCTTCGCATATTTTT TGTTATGCCATTCCGGCCGCATTGATTGGCTACAATGAGCTGCAATTTCGGTGGAAAGTGGCCGCAGAGC GCAGTTCGACCATCGCCTCTGTGCGAGCGCAGTAGCGCACCAGTCGCTCATGCCGCTGGCCTGGCTGCAT GCACGTATGCCTGTTCCATAGGGATGGAGGCAACGTGCTCCAAGAACCCCCGTTTTCACAAACATTTGTA CTTCTGATGTCCGTTCCGAGGACCTTCCTTTTTACAAAAAGCCCGCTCTAGGGCCCCCGTTTTTTGTCTC GCCCGTGGCACATACGATTAGACTATTAAATAAATATTATAAACTTCAGTCACTTTAAGTACAATTAATG TATTATCTGCATTCCAAAGATACATGTATATTGACCATGGTTTTGTATCACCTATAATGTCTTAATTGGT AAATATTAGTGAAACTGCTTTGTCAATAAAGTAAAGTTCTAATTGTATTTACCTCTAATGAAATGTGGTC ACTCGTTCGAGTTATTGCCATAAGAGGTTATTTTTCACTATGTCAGTCTGTTGAAATGATCTGAAAGTTC TCATCACAGAACTACAAAATAACTTGGAATAGGCCGATTTCTGTTTGAATTTTCATCATTTTGAAAACTT CATTCGTTCATGCATTTTATGTGACCAACACATATGACATGGCCCTTTAAACCTGAAATTATTGATGGGA GAAAAGTGGCTGAAATACATATGCAATAAATTTGGACAATTGAGATTCTATATCTCAAGAAACATTTTCC AGGGTTCTATATCTGACCTCACAATGGTGATTTAAACTGTGTATTCACGTCAATAGGATATTTATTGAAC AGGTTATGAAGAACCAAACAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds