Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041629997.1 PREDICTED: Lytechinus variegatus transcription factor 7-like 2 (LOC121432141), mRNA ATGGAAGGTCTACCATCTAGTAACCTGATGCTTTGTGTGATGCCTATCACTGATATGGTAATCATGTGGT TGCTTACGTCTCGTATAAAACACATAGCCTATTTCACGTTTGTCATAAATTCAAGACCCTCCATTAACCT TTTATTTCTCTTTTTCTCTTCTACGTTGCAGGGTCAGAAGATGCCGGTGCTACATCCGGCAGGGGCGTAT CCACCCTCCCTGGCCCAGCTGATGATGTACCAGGAACAGTACTCGTCTGGAACACCCCCACCTCACGTCA GAGGGTTAGAGGTCGACTCAAAAACAGGTATCTTAAGACGGAGCCACTCTGATATTTCACCCTACCATCC TCTGTCTCCAAGCTCACTTGGATCGCATCCATTAGAGGTCTACAACATGTCATGGCCTGGGCAAACATTC TACCCTCTAACAAGCAGCGCCCTCCGGTCCCCTTATCCACCTAGTCTAGCCGTTAGTCCAGCCAGTATGG CCCGTCTAGGACCATCACCTATCAGTTCTGGTCCAGTCCCCGTCGGTAGCCTTCCACACTCTCTCATGCA CCCAATGGGATCATCACAACAACACGACGCTCAGCAACAGAGTAACGACAGACATCAGAAGGAGAAGGAG AAGAAGCTAGCAGCCCAAGAAGCAAAGAACAAACAGCAACATATCAAGAAACCTCTGAATGCATTCATGC TATATATGAAAGAAATGAGAGCCAGTGTGGTCAAGGAATGTACGCTCAAAGAAAGTGCTGCCATCAATCA AATACTAGGCCGTAGGTGGCATGCGCTGTCGCGAGAAGAGCAGGCTAAGTACTACGAGCTGGCTCGCAAG GAGAGACAACTTCATATGCAGCTGTATCCAGGATGGAGCGCCAGGGATAACTATGCTATCCACGGCAAGA AGAAAAAGAAGAAGAGAGATAAAACTCATGGAGAGAATCCAGGTGAGCCATCGACACCCAAGAAATGTAG AGCAAGGTTTGGGGTGGATCAGCAGGACTTCTGGTGTAAGCCTTGCAGGAGGAAGAAGAAGTGCATAAGA TACATCTCATCTGACGAGAATGACCATGGAAAGAATGATGATGATATGGATGACGATGACATGGACGATG ACCAATCCGACACCAGTCCTAGTCAACCACCACCGCTTGATCCAGACCAACCCCCACCACCACCCCTGTC ATTGTCAGGGATGCTCCCCCATTCTCCTCTCCATCGGCCTCATCAAGATGCTGTGGTGTCTCCTAAACAG AATGGTATCCATCCTGGCCCAATGAGCCGTGTGATCGCTCCTCACCCTAGTAGCAGCAGCAGCAGTAGCG GAAGGAGCAACGGACACAGTAGTAGCTCTCAGAGCAACGGTGAACCACCAACATCAAAAGGACCAAGTAC ATCATCATTGCCTGTGACATCTTCTGCAGGAATGTCATCAAGCAGTTCATCCCACAAGGGATCAAGCCAT AGAGACAGTCATTCTGCCAGTCACTTGAGCCTGTCGAGTGTCAGCAAGCCTCCGGAAACAAGTCGTCCAT TGTTCTCACCACACCTGCACACGACGTCGTCGAGCGGTCCGAGCTCCTCGGCGTCGATATCGTCGTCGCT TTCGCATTCTACTCTCAGCATTCCGTCGCTCTCGTCCCAGCACATCTCCCACCATTCACAGCAATCCCTG GCAGCGCAGACGTCGCCGACCATCGTCCACTTACCTCATCCCTCGGCGGCGTCCTACCCGTCGCTTTCCA GTGCAACGTCTCCGATGGTGATGTTCTCGCCGCAGGCATCGTTGCTGGGTCACCATCCGACCCCTCCCGG GATGCATGAGGCATTCCGTCCCCACCTCGCAAATGGTTTTCCCCCGCACGGTCTCTTACCGATGCACCAC CCTCAAGGTATTCCTCCACCCCCTCTTATCTCTGCCGCACACTCTCAGCAGCTTAGAATGCCACTCTCTG AAATGCCTCAGGATTTATCAGTCAAGTCAGGAACTGTGACGGCATGACTACCCCGGTGAGACCTTGCCCA AGTCGCAACGTAACCATCCCCTCTCAATCCTCTATGCACAATGACCATTCAAACACAATCGTTGTTTGAG TGAAAACTTTTCTATTGACCTTCAAGAAATAATTCACCAACTCTGGTCTGACTCCTAAATACTTTGTCCT TTTAATGAGAATTATAGATGTATTTTTGTTAAATGAATTTGATATTAATAATGAAAAAAAATCTTGGAAG ATTTTCCTCTATGTATTCATTGGGCTAGTGCCTTGTACCCTCTTCAAGCAATCTGAAATTAATGACCAAT CATCCCCCCACCCCCTTATTTGATATGTTGATTTTGATACAATTTGAAACATAAGTGGCTGGTCCATTTT AATGTCATATTTATTTGATCCGATCTGTCCCAATCATCCTTCTCATATACTGCATGTTGTGGTATGTGTC CACCTAATTTTTTATTGTACCATCCCACCGTGATGTCGACGAACCTAGCAGCTTTGATTGTCCAAATACT GGGCCACATATCACAAAGCTTACAGAATGAACGTTGATTGCTCTTCATAACAAATGCAATCAGATATGAA AATCAGACCTATCAATCTTACATGTTGCGTTACCGAACTCTGATCTTTCAGACCTGCTTTGCTGCGGGTC TGTCCAAGTGTTGCGTTGCGGCCGGCGTGAGTCTCTCCACATGAACTGATAATATGTACTACTCAACGTT GTGAATTTGTAAATTATTTATATGCACGGGACACCTGTGTATCGTCTAGCCTCGTCTGACTCTAAAAGAC ATCGACCCAAGGTACCCGACTGCTTTCATTGGCACGGCCATTATCTACGCTCCTACCACTGTCATATCTT GGAAACCGGGAGAAAAAGGACTCTTGAGTTTGATATATGACCTGTCGCGACTGCTGAATTTATTGCTGTC TTTTTATTTGTTTTGCTTTGTAATATATTTCACTCACTTGCTCACTCCTGTATTTGTTTTTATTTTTAAA AGAGATGTTTTTGTTCATTTGTTGCTAGAGGAGCGCATCATACATTATCGGTCATTGCAGAATTCGGTAG TAAATTGATGATTCCCGGAGAAGTATAATCGTGATTTTAAATTTCAAATTTACTCTAATTTCAGACTCAT TACATGTCACAAAGCTGATACTCAGACTTTTTATTAGTGATACTTGGAGAGTCAGAACTCTTTAATGTAT GTGTTTCTTCACAAAATGTGACCAAATGAGATTCAATTTCAACAGTAAAAAAAATGAAAGGACCATGCAC CCACAAAATGGATAAAAAAATCTGCTGAGTCATCCACTTCTCTCTTTCACAAGGTATGACTGACATAGCA TTTACAATTTTTTTATGGTTGTGAAGGTTTTGCACACTTGTTTTATTTAAAGAGACTGTGAAGTATGATC TTTGTAAGTTGTGGTTATTTTTACAATAATGGGAAAGAGATTAAAGGTATTCAGTTTTAAGCTTTGCCTA GCTTACCTTTGTGTAGTTCTTTTCACACATGCATATTACAACTGTTATCCTCTTTTGATTGGGCCTCGCA CTATCGCAACCTTTGTTGTGCGAGATCATTTGTGAGAAAATAGAAACCTTGTAATGTTTGTCTAAATACA TTCTAAAACCTTGTGTTTAATCAGAACTGGAATTAATTGAAGAGAAGTAATTTGCAGGGTTTTGTTTATT TTTCTTTACTGATACAAACGGGAATAACATCAGAAATATATGATTCATTTCCATTCATTAGCCATGATTG AATGGAAAGTGATTTTAGCATGTTTCATGATCTATCTATATTTTTACTTTCTTTTCAAAATAAGTCTGAC AATCATTTGGTCATTAATAAGTTTTATTCAAGAGATTGCTTCATGACCAAGCAATTATCAGGTGACATTG GTGCAGCCTCAAAACTATCAACATGAAATTCCCATCGATATAAAGAAATTATTTTCCACCTATATTTTTC TTTACTGTTTTAGTGGTGCTGACAAACTTCTGCTGTGAAAACTCTTTTTTAAACTATAAAGTCATGTGAC CAAAGCAAGTCATGTGACGTATACAAGTCATGTGACCAATAGAAGTCATGTGACCGATACAAGTTGATGC GTCTCCCTATGCAATTCTGAATTACCATACTTGCAATCTTGTACATGTTTATTCATTAAAGGTCTATGAC TTTGTTTATAATTTTGTTTATATAATATTAGTAACAAATGTGATTTTATGTTGTAAGAATTATATTCTAT GTTAGTTTGATGTTTCCCCTTAATTACACGCAAGTACCTATCTGAAATTTTTGATTTTTTTTCTCTCTAT TTTTCAATCTTTGTGTAAGCTATTAATTGAAAGAATGATTTTCTTTTTGTACTTAACATCTCAAATATAA ATTTATACAAATGTACTTTTTTTAATTCAGGGGAATATGTAGAAAATATAAATGAATAGATAAAAATGAG AATGAAATTTTGATTTTAATAAAGCTATACTTACACTTTCTACTGAGTAAGTTAGAACTATGCTCAGTCG CATGTTGTATTCATTAAATACTTTCATATTTTTATCATTTTTTTTCAATTAAACTATTTTGTATTAAAAG ATTACATTTCTCATCCTTATCAATGATTTAACCCCCCCCCCCCTTTAAATGTCTGCAGGTTTTCTCTCTC TCAAATTATGGCCTGTATTTTTTTCCAGGGGGGGGGATGCTGTATAATAATTGTTAGGTTTTGAACAACT TATCTTCCCAAATTCAAAAGCATGTGGCTTCTTTGGTCCTTTACTTGATTTTCTTATTGATGTACTCATA TCCCATCGCTCTAAGTCAGGGTTGTAAGAATAGGTTTGTTATTTATTATTAAAATCATTTAAAATCACAT TGAAAACACATTTTAGAATCATTTTAAAACATATTTTAAAACCATTGTGTAAACCCTGCTTCGAATGCCC TGATCCCGTCTTTGAGAGAAGGAATTGTGTACCTCAACTTGCAGTTAATGAATGCAGAAATAAGTACTAT GAATTTATTAGTCAGTACTTTTGTTTGTTTTGTTTTTTTTTATACAAAACTGAACCCGCATGTATTCAAC ATTTTTCTTCTGGTAATAATTCAGACGTGTGTAATGTTATCCTTGGAGAATTGGTGGTTATGTACAAAAA GAATGACTAAATATGCAAAGAAATGTTTCTTTCTCTCACCGTAACATTAACACAGTTGCACGATGTAAAT TATGATTAATGTACAATAGAACTTTTATGATGAATAATTAAGGGTTGATTATAGACTCGCATTCTGAACA GTTATCACTGCCTTATCACGTATCTTGGTGTAGCAGGCCCCATTGTGGGGCTATGGGGGTGTTTCACAAG CAGTTCATGTGGATTTAACTTCATGCCTAAATGCCAATCCGCATACAACATGAAGGAGCTAATCTCAATG ATTACCCCATACTTCATCTGATTATCAAGTCATGCAAATCAGATTTACTTCTTACTTCTAACTTCTACAA ATACAGTGTGTATCAAAGTAAAGGCGATCCGAATATGGAGGGGTAATACAAAGAAATCATTGAATATTGC AATAAAGATTTAACAGAATGTGAAAGAGGGATAGGTACTGTACAGATCAAATTTTTCTAAGTTTGGATTA AAAAAATGGTGATGTGAACGGAATCTAGTCAACATATCCTACAGAAGGCTATCAAAGTGATCGTGTCCTC GATGAAGAAGTCACTCATCAGAGGCATCGGTATCTTAGCCCTTCTTGCCAAAACTTGTAAAAAATTGAGT TTGTCTTCAACATCAATTTGTTGAGTCATGAGTGGCGTGAATGGTACAAGTACAGAAGAGTGTCAATACA AAGCTGAGGAATGGTTCTTTCATATACTTTTTGAAATGTAATACTCAGTTCTCGATATATACGCCCTTAA AAGTGGATCACCTCTTTTTCTCTAAATTCACACTGTACCACCCGCCTCCCTGTAGTAAGAATTCAATACA TCAGTAAGACAATTGGGGTTAACTAGTTTAAAAGTTGATGTGATTTCTCAAATCTTTGGCCTGAAGTGTT ATTTTTCAAGTAATGTCACATGTGATTCTAATTTTGGTTTGCAATGTAAGGTTTTATCCAGGTTGGGTTG GGAGTCATCAATGAAAGCTTTAATAAGTGCACAAGGACCAAATCATACCACTTTCGTACATCAGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds