Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041629314.1 PREDICTED: Lytechinus variegatus protein bicaudal C homolog 1-B-like (LOC121431668), transcript variant X1, mRNA AGCAAGAGAGAGAGAGGAAGAGAAAGAGGTTGGGAAGGCAGTGATTGCAAAAAGTCGATCTTGTCAGTTC ACATGCATACAAGGCATCGAGCCTGTGATGTTTGCGTTTCCTCTCAGCTAGCAGGAAGACACTGGAATAG CATTGAGAGTAGTTCAACTGTCTGACTCCCTTTCATAGTTTGTTCATTATAAGACTAGAACGAGATAGAA CTTTCAGAGAAGACCAACCTCTGCATGAAGCAACTCTTCTTCGTTAGCCCTGCACGGAAGCCCTGCACGT ATTATTGATATCATTTTGTTGGAAGGAGGTTGTATTTCCCTGAACTGTGCGGAGGTGGAGGGGGGTTCGT CAGAGGCACTTGTTGGCTTCACGTTCTGACAGCGTATCGTGTTTTCCTTCAGAGATATAAGGAGACGAGG GGAAAAATGTTTTGTGGTCACTTCACAGCTTGAGTCCTGAGCCAGGAAACTAGGTTGGAGGGGACAGCCC ACCCTAGCCTTGCGAAGTGTCTCCCAAATAGTGTGTCTTCAGTGATGATCGCAGTGATGGCACCAACAGA TACATAATATTTGTTTATGGTGGTATAGGATCTAAATAGGAATTCTACATTAGGTTTTAGAAGAGTTGCA TAAACCATGGACTGTTAAACAAGTAGAAAAAGGAGATCACTTTGGATTATTGTCTGGTGTTATTATCTGG TGTTGACTAACTGGGAAAGTTTACTTTTGGAACTTAATCACTACCTCAAGTTTTGATGAACTCCTTTTGT TATGACCCTCACATAAAGGTGGCGGGGAAATTATTTCACGTAGCAGCTGCCAAAGAAAAAATCATGTCAG TCTTAGACACGAAGAGTAACCGTGTGACGCTGAAGATGGATGTGTCGTACACGGAGCACTCTCACGTCAT CGGCAAAGGGGGCGCTATAATCAAGAAGGTGATGGACGACACCAAGTGCCACATCCATTTCCCGGACTCC AATAGAGGGAGTCAGCAAGAGAAGAGTAACCAGGTCTCGATAGCGGGACAGATTGCTGGTGTGGAACAGG CACGGGCTAAAATCAGGGAATTACTACCACTAGTGCTAATATTTGAGCTGCCAATTTCCATGGGGGTGGC CCCCTCCATGAACTCCCCCATCGTGCAAGAAATAGTACAGACCTACAAGGTGGCCGTCAACATGAAGCAG AGGGGCCGGGGCTATTCCACTACGGTGACGGTGAGGGGTGCCGTCAACAATGCCAGAGGGATGAAAGAAG GGATAAGCAGGTTGATGGAACATTTGACTGGAACAGCAGGGGGCACGTTACCGGTAAGCACGCAGATCGA GATATCCCCACAGCATCATCAATTCATGATGGGACGAGGAGGATTGAACATCAAGCAGATCACGCAGTGT ACGGGGGCCAGCATCCATTTTCCTGATCCAAACAGCTCTCAGAAGAAAAGCTCAGTCTTTGTCTCCGGAA GCATTGACTCGGTGATCGTTGCGAGGCATCTGTTGATGGGATGTCTTCCTCTGGTGTTGATGTTTGACAT GAGAGAAGAAGTGGATGTTCATACCACCAAACTGGCTCAACTAATGGAACAATTGGACATCTTCATCAGT ATCAAACCTAAACCAAAACAACCAAACAAATCTGTCATTGTGAAAAGCATTGAAAGAAATGCTCCCAACA TGTACAGAGCAAGGCAGATGCTCCTTGGTCAGGAGTGTGAAAGTTGTGCCGTCAATGCCAATCCTTCCCT CGGCATGAATGGAACATGCCTGCCTGTGCATGGCTATAATGTGGGCACAGTTGGTCTCCTTGGGCACCAT CAAGGATCCATACCGGGTCTCACTACCACCGTCCTTCCCACCCTTAACGGATTAGCTAACCTTAATAACC GCAATGCACTGCATCTCACCAATACTTCCACCACACCACAGACACAGTGGACGCTGCAGAATATACCCAC TAGTCTCGCATCAGGTTTGACGAATGCAACGATGACTCCTGTTCTTGTACAACAGCCGGTTAATCCTCTC TTGCTGACGTCACCTAGAGGATCCATCAGCTTCACTGCCAATGCTGCATCCAATCCTGTAGTCACCAACC CATCAATGTCACCTTCAAATCCCACCGCTGTCACCATTCCAACTGCTGTGCACACCATCCCTAATGTCAC CCCCATGCAAGCGACATTGCCTGTTGCCTCTGGTGTTCAAGCCGTAGCACCGTCCAACCCAACGATGGGT ATGCCAACATTACAGACTGCCCTGCCTACTAGCCCCACAGGGGTTCAAGTCCCCCAAGGCTTAGGCTCTG CCAATCAGACAGTTCTGCAGCCTGGTCTGCCTCAAGGGAATCCAAGTGCAGCTTCTGTACAGCCAAGCAT AGTAGGAAATCCCACCGCTGCCACCAATATTCAACAATCATTACCAATGAGTTCTGCTGCAGTGATGCAG CCACCATCAACAAGCCAGCAGACACCAGTGTTCCCTACACCTGGATTACTACCTCAACAGACTCTTCAGG CCACTATGCAACAGATGCAAGGTGCCCTCAACCAAGCGGCGCGTGACCAGCAGCAACCTCCTCTCCAGAT GACTATCAACACCAGCATTCCACCACCACCTCTCCCCCAGGACTTCTTCAACAACCTGAACATGGCCAGT AGCGCCGCTGCTGCTGCTTCATCTGCAGACCAGCCCCTATTCTCAGAAGCGCCTGCATACACGACAACGC CTCACACGCCGCCGCCGCCTCCTGGGTTCGCCAAGCGGGATCCAATGACTGTGACATCACAGCTAGCTCA GCTGGAACTGAATGATATCACTGCTAGAAACCAATTTACTAGTATGTGCAATAATAACAACCACATGAAG GACTTGATGATGCAGCTGAAAAGCATGCAAATGACACCATTGCCAAATTCAGATACAAAGTGCCCATCTA ACCAAAGTAGCAGCCAGCCACCGACCCCAAGAGACCCTGGCTCCATAGACCTCATCACCACGGTAACGCC CCCACTGGGTCAGCTGGGTCAGTCCTCGGACAGGACCCTTGACCACAGCGGAAGCAGCAGCGGTCAGAGC ATGCCTAGGAGTCCGACAAGCTTTGTAGACTTAGTGCTGTCACAGAACAACAACTGCTCACCGAGTAGCA GTATGAAACTACAGAACACAAGTTTTTCACCAAACAATAGCAGCCATGACCTTTCAGGCATGTTGGGTGG CCATCGAAGGTCACTCACTCCAGACGAATCATCAGTCTCTCTCTTCTCTAACAGCAATGGTAGTGTCACC CTCAATGGATATGGCACGAGATCCTCTGAATCAGGATGCGATTCTGATAGCTCCGATAAGCGTGCTCCAG GCTGTGAGAGGAGGGAGAGGAGACGGGAGAGAAAGCTTGAGCAGGAGCAGCAGGAGAACCAAGAGGGAGC CGACTCAAAGGATCAATCTACTCCATATGGAGAGGACTATGACAAGAAGAAGTTCCTGGCAACTAAAGCA ATGAAGAAGAAACCAATGGCTCCTGAGGTTCGTGTCCCTACTGATCTTTGGAGTGGTCTGGGATTCTCCA AGTCCATGCCAGAGTCGGCCATCAGGGAGGCACGGAAGACCAACGGTTTCTCGCTCTTCCAGATGGATTC TAATCCACTACCGACAACCTACGAGACACCCAACCAGGAGCAGGGTGAACAGGGAGAGGATCCCTCCTCA TCGACCACCTCGTCGACCACCAGCTCATGGCCTCCTGGTAGGTTGAACGATGACCCTCCTCCCAGCGAGG TTTCTAACGGTGGCTTTGATACCACACCTGGCTATGTCAAGAAGAAGAAAACTACTACTTTCAGCGACAT AAGTTGCAGTAACTACATTGAGAGCACAACATTGCCCAAGTCAAGCAAGGGGTTGTGGACGGCGAAGGAC CTCAATGCATCCCTCTCATACAGACCCGACCTTGGGGATATCTTCATGAATCTTGGTCTGGGGAAATATA CAGACGTCTTTCAGCAACAAGAGATTGATCTATCAACGTTCCTAACATTGACTGACAGAGACCTCAAGGA ATTGGGTATCACCACTTTCGGAGCCAGGAGGAAAATGTTACTAGCTATCTCAGATCTCAACAAAACCACC AAGGATTCCCTTGCCCCTCAGACGTCCAATGCCAATCAGGGTTACCATGGAAACACACCTAGCAACGGTT TCATCACGGGACAGTCCAACCAGCATACAACGTCATGTTGGTAGTGTGTGTACGGAGGAAGGTTACGGAT GCCATGGCCTTGAAGACAATCAGATAATATCTTCAGCAGCATCAAACATGGGCTGTTCCGGTTAGTCTTA GCTTGATATTGGGGGGATGCCTAGCTTAATTTTTATAGTTAGAAGACGCCCCTGCTTTTTTGGCAATACA GATAATTTTTATGGTCTAGGGTGTAATATAACGAGATAAAGTCACTATTTATACTTGATTGTAACACAAA AATTGCAAGCGTATGTACAGATTTATCAGGGTAATACAAGATATAGCAGTCAGATCTGACAACTATGTCA TTGGCTGGCATCTTGTCCTTGGTTTGATTGGCCAATAAGCACTGGCCTCTGACTGTTACTATGGTAACTG GCAGACATTGACAACTTCCATCCACAACATTAACGACCTCAGCGTTGACAAGCTTCGTGAAAAAAATACA TAGGACTTGGTGCATGTGCAAATGTGACGATGTAAAACATGAGAACAATAGCGCTATGACATTTAACTAT TATATGGATGGTTGACCATTGAGGTTACAGAACTCATGAGCACTAAGTGCTGAAAGAAGAAGAAAATAAA GATGTACAAGAAAGAATTTTCACATAGATATCAAGGTTTCCTTTGTTGGAACATGCTCTTGAGTCATTAC TTGTATTTCTTTTGTTAATTGCGCACAAGCATCTAGATCTTGCTTGTGCAATATATTAAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds