Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041620450.1 PREDICTED: Lytechinus variegatus homeobox protein EMX1-like (LOC121424701), mRNA AAGCGAACGCCGAGATTGGAGTCAGCAAACTCAAACAGCTCGGTGCATAATTTTGGAGGTGGTGTACGGC CGGCCGCGCAGGAGAGCGTTTAGCTACATTGTAGCAGCCCAATGAACAAGGGGGTAGTTCTATTAGGGTT TATAGTGATTCTTCACCATGACGTCACATCGATGACAGTTTGCATCTGCCAATCAAAAGTGACATGAAAT GGCGACGGGTTATTGGGCAAAGAGGGAAGAAGAGAGAAAGAAGTTTTGATTAAGCGTTGCATACACTTGT CTCTCATACGCTAATTGTGGAGTCCTTCTCTCTAACGACTATGCAAATTGACCGATTAGCAAGTTAGATA GGAATCTCATCGCTGGAGGAGGGATCGCATCACTCGGCGTACATGTCTTGGTCTAAAACAGAACTTCTCA TTCTCTTGCAGGATAGCTGACGGGATCGGCTATAACACGCCGTGTTCATGTGGAAATTCATTATTATATG AATCAAATTCCAACATCGCTTTCTTCACAGCCTGTTAAAAAGTAACGGACGACAAGACTAATTTTTCACC TCATCCTCGTCAATTTATTGCATTCATTCAGATCAACTGGGCTTCATCACCGTTCACTCCTTTTTTCCAT TCTGCCGCAAAGCGTTTTTTTTTCTTCAAATTTTAACTTGAACGAAAAGTAAAGTCAAGAAAAAATATTT TATCTTTCATTTCATGTCTGAGGGGTTGAGAGTGTATCCCCGGTGTATCCATCTTGTTACGCTTTAACTG GTTTCATGCCCTGTGAACCCCCTAAACGGTACATAACACTGGTGGTCAGTGCGTTGATGCGGACGTTTCT TATTCGACCCTCTCATTACTACACGTGAATCAGCTTTACAAACTTATGAAGCGAAACTTTGAGCAGGAGT TGAAAGTTCAATTTTGTATTTCTACTTATTTCTTGGACTTGAGAACATAAATAATTTAGAGTTTTCTCTG CGAGAAGAACAACGGGAGATGAAATAGTAATTTCTCAAACTTTGAGAAGAACATCATCTGATCCGGCTTT GAAAAGGATTATTTAAGGAGAGGATTGAAGAGTGACAATTGAAAAAAGATGTCAGCGGTGGAGTTATTTC GACCGCCTATTAGCGGCATCTCGACATCAACCAGCAGCGCGACGTCGAAATCGAGTTGTTTCACGATAGA GTCACTTGTAGCAAAAGACACAAATCATAACAACAACAACAACCACCATCACCATCATCATCGAGCAAGT CCGACTCCTCCGTCATCACCGCAAGCTGCAGCTACGGCATCAACCATGGAATCGAACTCGTTAGCCTCGT CACCGTTCACGCCACCGGCGACGAGCCGGCATGGCGGGATCATCAAACCTATGCCCACCGAGGCATCATT CTTTACCTCGCTCAGCGGGATGAAGGGACTCTACCACCCAGAGCCTATCTATCACACCGCCGCCGCTAGC GGGCCACAGTCTCACGTCGGCCCGATCCAGCAACAACTCGGACTCGCGCATCATCATAATCTGGCAGCCG CCGCAGCAGCAGCGGCAGCCCAACATAGTCACCCGGCGCTTGCCGGTGTGTTCGGCGCACACGGTCTTGG TGGGCCGAGGCGTGATGGTTTTGGACTATATCCGTGGTTGCTAGCTAGGAATCGTTTTCTTGCCGCAGGT CACAGGCCATTCCCAGGTGATCTTCCAAACGGTGGATTCTTTCTCCAACACCCATTTAGGAAACCCAAAA GAATCAGGACAGCTTTTTCTCCCTCCCAGCTCCTCCGACTAGAAAATGCCTTCGAAAAAAACCATTATGT TGTAGGCGCGGAAAGAAAACAACTGGCAGCAAGTCTAAACCTTACAGAAACACAAGTCAAGGTATGGTTC CAGAACAGGAGGACAAAATACAAGCGAATTAAATCTGAAGAAGAAGGGGAACAAGAACCCAAAAAGAAAG GATCTCATCATGTCAATCGATGGAGAATGGAAACCCAGCAATCTATCGAAGATAGAGAATAAAAAGCCAT TAAAACTCTTTTTACAGAGATGAATTTGAAGTATTTGCGAGGAAAGACAATCTTATACTAGAGCATATAA AAAGACTCTTTAAAAGAGATGTTTGAAACTTTGCTGGAAAGTGAATGATTTCATGTTGAGTTTCATATTT GAATTGGACTGCCAAGGAACGAGAATCGTGGATGAGAATGGAGCTCAAATCGTGGTTCCTGATTGGTGAA TACATATTGATCACGTGATTACATGGTAGTGATGTTGGTGTGCCTGTTAGTGCAGAGACAAAATGGCGGC AGTGTGTACAACTTGAAAGTCATTTCCAGTAAGAACATTTTGTTGATTCAAGACGGCAACAGACGGACTA CAATTACAACATAGTCCTATGATATATCGGCAATATTGTATACTCTCACCTCACGCCTGGGTATAAAAAA ATAAATTACTGATACTGAATCACTTTAATTCAGTTTCAGTTTGGTTTATTTTCATATCTCACAAAATATT GAATACAATGTAAAGTCCATCCAAAAAACAATAAATTATTAATGATAAAATAATTCAAAACATCGCAACA ATTCAATATAAATAAGGCAATGCTTATAACATTTAGACGGTCCAGATTGGAGACAAATAATTTTAATAAA ATGAGAATATGAAGGATAAACTATCAAAAGCAAAGCTTGTATAGTTTCCCTGTAAATAAATATGTTATCC AAAAAAGAAAGAGAGATAGAAAAAATACCTAAAAGGAAAGAGAGAAACAGGGAAAAGGAGATAAGGGTAG ACTGACAATTAAGGAACATTTATTTGATTATTGTAATTCATTTACCTTTTCTTTATTTCTTGCCGATTTA ATATGTTCTTAATATTGCATTGAAGATTTTTTTAAATATGATATCGATCTTATTGTATAGGAAATTTTAT AAAAGACCTATACGTATATGCATATCGCTTACGTAATATTATGATACTATTCATGATAAACCTGACTAAG CGAGAGACAAGCATGATATCTAATAGACAGGTGTCACACATGTAAAACACTAATTTAAAAATAATTCATT TCTATTTTTGTTGGAAGTGAATGAGCTAATGAATCAGGGGATACTATTGTATCGCAGCAGATTATACCAT ATTGTAATACTAACCGCACACGTATTGCTATGACAATCACTTTCAAAAGTTATTATTCTTTCATTTTAAG CCGAGGTCAACTATATCCTACTTCAATCATGATGCATATTTCTGATAAAAGGTAATAATAGCGATACTAT CTTTCAATGTATGTTTGTAGTAAACGCTGCATTACGCAACATCTTTGATGTAACATAGTTTTAGTCATCT TAAAATATCTGCAGTGATTTATTGCTTTATTTCAAAAAAAACTCTATGGTAATAACTGCTCACTCCGAAT CATTTCGGCGCACGATCGATGTAAATTGGCAACTGAATTAGTCACTGTGTTGACTTTGGTAATTGTATTA TGATAGCAATAATTCGTCACCTTTTTACCATAACTAAATCAATTGTCCTTGGGATTGGATGAAACTTTGA AGGAGGGGAATTTGCAACAAAAGTGTGTATTTTCTTGCTACGTTTTGGAGAATCACTCCCTTGTTTAATG CAGCATAAAGTGAAATTGATTGGAACATTTTATCGCCTTCATGAGCGGTATTGTGTCAACCAAAAAGAGC AAGTCGTCGCGAAAGAACGGGTTGTTAGAATTTGAAATTTAAGACTTTGCCCATTGAAGAAAAGGTGACG TATTTAAAAAGTTGTCCTTGCTTTTTTTTCACTTGGGCGCAAACAATGTTTAATTCATGGTTTAAAGAAC AGCTTCTCGGTGAGGAAGATTCGAAGACCTGAGATGAATGCGGTTATATAGTAAGGATATTTAGTTCATT TAAGATATTTATTACACCTGTTAATTCATTCAAACCTCTAATATCAGGATGATAGATTTGCATAATCTTT ATTTAGAGATACTCTGTAGCCGTATGACCACTTTCGGTACTGATCAATCAAATTATAAACAGAGGTTTCA TATGGGAATCTGGTATGATAGGGGTATATATTTGGAAGTGTATAAAAAGAAATCAAGACGTGAAATCTCG TTTAGAATTTGGGAAACCTTGAATATAATCCTTTACAAAAAAATTCTTATTCCTTAATCATATCCCATGA TATAATATTTAACTTGAAACCAACCTTGAACATTGAACATTAAATTTGCAATGTAAATCTACGCATTTCA ACAGGCTTAATTCCACAGTCATACTTTCACATCGGCATGATCAGAGGCATGCACCCGGAGCTCGCCCGTA GTCGGTCGAGCAACTGCTCGACGATCCAAGCTAAAATTCGTTTATAATGATGGTAATTCGCAGGAATCAG TATTCGTACACACCGAATGATGATGGTGAAATGGGAATTTATTCAACTGAGAAAGCTTCCTGCTTTTCTC GCTAATTCCCACCCCCCCCCCCCTATTCCCTTGGTCATTTTTTTAGAGGAAAGCTACAGATGTTGATTCG TGATTCATGCATAATGGAACTCAAGTCTAATTACATCTCCCTCTTTCTTAATTCCAACGCTTCTTCCATC TTCTCACCTATCTAGCACTATAAACGATGTTTTGCGCAATAATATACTTTTCTTTTTATTTTATGTTTGT TGTTTATAATTTTACTTCATACCAACGCCAAAACATTGCTTTTTTCAGTATGAAAATCACATCGAACTAA CCTTTTTATTAATGAAGGTCAAAATTTAATTCATATTATGGTATGTAAGATAGAATCCCTTTTATGAATT ACAGTAATTATAATGACATCACATTGGAGTGTATTCTTCTGATAAGCAACACTCTTGACGATAATTCATT TATTTTCTGCGGGGATACCGATCTCTGTGTCGGGTATAGAAATGCTCAGGGGTAAAAATGGCGTTTGTTT AGTTGTGTGGAAAAAAAGAACGTTTCAGGACTTAAAATTGCCGATAATTTCAGTTGTGAAGGCGTTGAAA TGATTGATCAACAGGAAGATATTGCGCGTTATTATGATTAAATATTTTATTTGACGTTGCATGGAGATGC TGATTTTCGCATTTCTAAAACACTGCACATTGACAAATATATTTATTGACAAATTCAAGCTGAAATATTA TGATAAAGTCATACCATTTACCATGTTTACAGCAAACGAATATTGTGACTATCACGTACTACAGTAACTG TACAATTCCTTATGGTGTTTTTTGTGTATAGATTTTATTAATTGATATGTATATGGAGACAATTATTTGG TGCTTGTTAATCTATGTCCCCAATATGGGCGTTTTGTAGCCATAGAAAAACTATTTCTTCTCTTTATTTA GATTGAATTTTTGTCGGTATTTTTCCAAATGATTTATTGTTCAATTTCATGATTTTTTTTTCTATTTTGG AGCATCTATCTATGTGCGGGTAAACCGGAGCTTGATCGAATACTGTCAGAGAGATTGTGATATAAGAATG ATTACGTACTAGCTTGTTTGGTGAAATATTAAAAGATTCGATTTTTCATGGACCAAGGAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds