Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041613401.1 PREDICTED: Lytechinus variegatus mediator of RNA polymerase II transcription subunit 17-like (LOC121419093), transcript variant X2, mRNA GCTGATGACGTCATTAGACCTTCACCCACAATGCAACTTTGTCTCTGTGCAGAGAAAAAAAAGAGATTGC CGACCAAGAAATGGCAGGACCTTCTGTAAAACTCAGCCTAGAATCTCTACAGGAGCACAAAGTGCAAGAA ATTTCTCTCGATGGATTGGAAACTTACACAAAACCCCTGTCTATGTCAGAAAACTTGGCAAAATTGGCCC ACAAGATAGATTTTGCTACCCAGTCTGATGCTGAAACACCACAGAAAGATACTCAGGACACAGAAGATAA AGAGGCTACAACTTCATTCCAGCAGCCTCAATGGCCATGGGAGTCAGTGAGGAACAAAGTCAGGGCTGCT TTGACAGAGATGAGTGTACTGTCAGATGTTCTTCACATAGCCAGATCAGCCAACAAGGAACAACCCTACA TGGTACTGGATCCAGTATCAGTAGAAGGAAGCACACCCAAGCAGCATGCTCTGCAGATTGTTGAAAAAAA GAAGAGTTTGGATGCAGCTGCCAGCATCTTGACCAATGGAGCTACCCGCATGCTGCAGTCCAGACGATTT GGAGGCAGCGCAGAGAAGAAGAATGCGAAGGATGATTTCTTTGGAGAACTCCATCGACTCAGAATGCATT GGAGGCTGAAGAAAATTGGCAACAACATTCTAGGAGATCTTAGCTTCAAGACTGCTGGTTCTCGTTTTTG GCACACGGGCACGTTTGAAGTGGCTAAGTCTACTGACCAGGAGATAGAGGAGGCTGAACAGAAAGGTATC CCACCTTGTGCTATTAGGGTTACCATACCATCTGATCTACAGGGTACTAGCTACATTCAGGTGCTAATAC AAGAAGGTCAAGCTGATATTGCCAGTGCCTTGGTGCAGAATCCCAGCAGAAGCCATGTATCTTCTGATGC GCACTGGCAGGAGAGATTAGAAGCTGCTCAGAATGTTCTCTTCTGTAAGGAACTCTTTGCACAGATTGCT AGAGAAGCAGTGCAACTAAAAGCACCGGTCCCTCACCTAGTAGTTGGGAATCAGATAATCTCTCACATCT TTCATGGTGTTCAACTCTGCATCACACTTTGTCATGACACCAATATGGACAAAAAGACTGAGGCTGCAGT GAAACCAAACCATAGCCATGCCCTTGAGCATTCCCTCCATCAGTTGCTTCGAGAACTTCATCGTGGCAAC CTGAATGGAGCTACCCCTAGGCCTATCACAGCTGTTCACACTGCAGCAGCAAAACGTAGGAGAACTATGT CTCTTCAGGCTGCAGGGCACAAGGAAATTGCTCAAATTCAACAGACGGAATGTTTACTGGAGAAGATTAT GAAGCAGGCAAAGCACATTGTCCTCAGGCACAGGGTTGGTAATTTACTAGATGACATGTCGGGAGAGTAT GAAGATCCCAGTATCCAGGCACATTGGGGAGCTATGACTCAACCATTGCAATCAACAGTCAAAGTTCATA TGACCTCCAGTGGATACATCTATGAACAACTACTCAGGTCTTCCCTCCACTTATGTGTAGAGACGGAAAG TATTCAGGCGGTAATGAAAGATGGGCGGGTTGTTAAACTTACACACCATCTACAAGAACTACGAGATCTC ATCACATGTATGGTCTCACAACATCAAGTGTTAATCCTGGCCCAGCTATGTAAACACATGAGCATGCACA TGCTTCAAAATAACATTCAAGTTGGGACAGGACCAGCTGCCAAGCTAGGAAGTACCTCAGCACTCATGTT CACAACACCTAATGGTCAGAAGACTGTAGCAGTGCGCTCTGATCCCCTGGAAGGCATCACCGTGATGGTT CAGGGGTGCAAGGCATCGCCCCTTTTACCCCAACCCGAGATCCTTAGTGATGTTGTGACTGATGAAAAGT GGGAGAATCTACCAAAGGGCTTCCGAGAGGTGGACATGGCTCGGATGCCAGGACGAAACTTCATCCATAA GATGGAGATGCTTCTCGCAACCCTTGCCAAATGAGACTACACAGTGACAGAATTGGACTGTATGATGTAA TATGTAATGAGGGTAACTCCCTATACACTTGAATGAACATGTTTCATGCATTGTATCATAGGTGCTAGCT CTCGCAGCAGTGCATGAGCCCCAGTTTGCCCCCAGCCTCTCCATCCAGCCAGCACTTCTAAGAACAGCTT TTAAGTTTAGTCAGTAGAGAACTCTAGTCATGTCTGACATGGAAAGCTGTCTAGCCTGGCCAATTCCTGT GTATTGAATCAAGGGTGATCAGGTACTTGGACTGCTCTGTGCATGAGCAAAGAAGAAATGTAATATATAC CTTTCTTAATACCTTGTTCCCACTGTCATTCACCGGTTATGATTGGCATTTCGTAGCTGAAGAGGAAAAT TTTTTGACCATTAGAATATTTCTCAACAATCACGACTGTCACAATCAATACAATTAATCCATGATTTAGA CCACGGTTTCAAACATGCGAATCATGAAAGTGGAAACTAGGTAAAATAGCATATTGGAAAGAACATTTCT TTCAGTTTGAATAAAAGTGTTTCTTTAAAAGGTTTCACTGTCTTAAGGATTTAAAGGTTGTGTGGACACA AGGGAAAAGACCCCCTCTTGCCATGCTAACAAAATTAAATCAGTCAGATTATATGGGGGTGTGATTAAGG TTAGGAACTATTATTCCTCTTTTCATGGTAGTCTTTTGTGATTCAAATATTTTTCACAAAACTCATCGAA ATTAAATTGGGCATTCCCTAAAGAATTACTGGTATTCAGTGGCACGTTAGATATGTAATGATTTCAATCT CTTCACGTTTGGTAGGTCACAATCCAATTATTTAGAGATATTGATCAGTGCATGATGTTTGATGGCATAG AAATGTGCATTTCCAAAGAGTAATCAAGGATTTTCTTATCACAAGCATGGGTTCTTATGTTTCTTACACT TAAAAACTTTAGAGAATTATTTTATATTTAATCGCAAAGCTATACTTCGATGATCTGCCATAAACTTTTG GCTTCAATAGTACATGTATTTTCTACAAATGATTTTGTTTTCTTTAGACAGAATTGTAAACAAAATTCAT TCACAATTAACTCACAAGTTTCAGAATTGTTAAAAAATATCGATTTCATATTTATTATGTACATGTAGAA GTAATGGAAAAGAGATATTAAATTGCTTTATATAAAAGTAATCCTCTTGTATTTACAATCATTTAATGCC AAGAGTTTATCACTTACATCATTCACTGATGCACACAAGTCTCGCCACAAATTATTTTCCACTATCACAT TCACAGATGACACCTTATTCATTAAACAAAATTCTTTTTTTTTCATGCTCAATTTTTTTTTGCATATTAC CCATGTTTCATATTACACTGTTGAAAAGCTTGTCTAAAGCTAAGGTTCTGGTTTTGAACTCTAAATAATA TCACAGTATCATCTCACACTCTGACCTTACAAAAGTGAAGGGATAATAAGTCTTTTTCTTTTTATCTGTC GATTCTTTGTAAAAACTGAATTTTACCTGTCAAGATATACCGCGCCGTCTCTGAATCATGATTTTATATT TCTTAATAAGTGCCCTTACAAATTTAGCTAATGCAGAAAGTTATTTGAAAAAATTATTTCATCATACTAT TTTAAAACCATTCCATTATCAAGATCGGTTTATTCTACGAAAAAAAGAGAAGTGTTTGGAGTGATACTTT TTTTTTCAATTTGACACTTTTTGTTGAAAGCAGACCAAATAAAACATATTTGTGAAGGATTGGGGAAAGT CTATCCATGAGTAACATTTGTTTTTAGTTTAAATATTGCAATTTCACATGCAGAGAAGCCATTTTAATGA AATACAATATCTTAAAGAAAAAATGAGTTTACTTGTGCATTCATTTAATCATCATTTCATACCCACTTTT ATCTGAAAAATATTTTCAGTCATTGTAGGCCATTAAACAAGGGAGTCTATGAACTTTATATAACATGCTA TATGGAGCAGCTGTTTGTATATGAAATCACAATTTCAGGTTTAGAAATTCATAACTCGCTTTGATGGATT TTTGCCAAACATTTACCAATATGTATCTCTTCTTTATTCCTGCTTTTATGTAGACACCTTTGTTATCAGG GTAAAATTCCCCTGTAAGAGAACTCCTGAGGACAACCTGAGAGCCATTAGTTGAATAGCTAAAAAGGTTT TACCACATCTCTACTTTTCTGAATGGAGAATGAAAACCCTGGATATAAATCGATTTGGTTGTACACATGG ATGTATTTTTTTATTTATTATTGCTAAAGAAACAGCCTGTGTCCTTTAATAGCTGAAGATACTTGTATGT CATTGGATTTGACATACAACCCTACATCTTTTATTTAAGCAACATTCCTGATTTGGAATCATTGTGACCA AATTTTGAAAGAACTTAATATCTATCCTCTCCAGAGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds