Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>GAUR01034018.1 TSA: Lytechinus variegatus AMR9006.33873.0.2 transcribed RNA sequence CACAAATGTACAACACTACATGCTCTTAATTTTGCATAGTTGTATCAGTAATACAAGCTGAGAAGACTAC AGAGTACTGAACTTCACTTTTTGAAAAAATACAACAACACAAAAACAACTTTCAGCCAATGGACGGAATC CTCATATTAATGCAATAGACACAAAACAATATTCTTTATAGTGCATGTCCATCATATTACTGGCAAGAAT GAAAGTAGTCAAATATTGACAATAGTTCTTCTTCAGTTTTTCCACATGTTAAATATTAAAAAAAAATTGA CAACCTAAAAAAGGTTACATTCCCTTGAAAGACTGTTAATTGATTTAAATAATTATTTGAACAGTACCAA GGATCCAAGATAATATGGCAGGGGAAAAAGCACAAATTCTCCCCAAAAGTGATATCACTAAAGGCAAATT TGCTTTACTATGTCAATGCATACCTCCAAAGACTCCAATGTAAGATGTACATGTATTATTATCAGGGTTT TTTTTTTCTTGTGTGGGGGGGGTCACCTGTATGTTCTCCGTCCATTTGGAACCACCGTTTCCTTAAACGA ATCAATAATACAATCCCTTTAACAAGTCTTAAATATGAAATCTTAAATGTCTAATTAAAAATTTGGCAAG ATAAAATTTTCCCTCTCCATGTAAAGTACAATGTTCTAGTTTACATTGCATTTGTTTTCCCATTACTTCC GTTGTGCAAAATCACATTGCACATGATACCTTAGTAAAAAGTACATGTAAATCTACAATATTCCTTGATT TCACTTTCCCCAGTAAACAATTATTATCTTTCTTATCATGGGGGGTCTTTTTCTTGCAAGTTTTCATGAA ACAATTGGACATTAGGCATACACAAATTGCCAATATATAAATGATAAAATAAGCAAAACTTCAAAATTAG AATATACAAAATATAATGAAAGGCTCGTACATGTAAACATACATGTAGGTGAATAACCCCACCTCTCCAT AACTAGATAATTGATTCATGAATCAATTTAGAGATGATTTGATTAAAAAATAGAATACTAGATATCAACA TTTGCAAATTGATGTTTGAAATTTTTGCAAATGACTTACTCAAACAGTTTGAATAGATCAGTCACAAATT AGTGACTGGTGTCCTCATTGTTGTGTGATATATGAAATCAAATAAAAAGGAAAATAATCAAATAATATTA ACAATGACATCTTGTTATCAATAAAGCATTTACAAAATATAATCTAATAACTTGGACTATCAATAGCATG GTTATAAATTCCAGTCAGTCTAGCCGTTGTGAGGCACTATCAATGCTGGGGAAAATATCATGAATTATGA TGATTCAGAAAAAGAAAGTGGCTTTTCAGAATGAGGAAACATAAAAATGTATTTTTCTAATATTACAATT ACTAATGGATTTTATAGCCTCCCAATAATCTTCAGAGATGAACTTCACTCTAATTTTGTGCAATAAGTGT CCCTGTAAGTTTAAAGTCCAGCTTTAAACAAACAATATGACAGTTCAAAATTGATGAGTACATGTTGGCC AAACAATTGGCTATTCAATGTAATCCAATTGATATCAAATAATTACTTTGATCAGATAGGTTACTGTTCA TCAGCTGCCTGCAGCTGCTTTAGACTTCAACATTTCAAGTAGGACCCAGTGCTGAAATTGTCAAGACTAA ACTTATGGCACTGGTGACTTAAAAATTGTTCACATCTGTTTTTTCCCCCTTTATTTATACATCTTTGGTA ACTCCTAATGAATGACAACTTGTCGATCTCAGGGTGGATCATGAATCAATGCCAAAGACTTAAATTGACC GAAGCAAGATGAAAAATAATATTCTTTACCTTAAAGATAGTAAAGGCAAATGCTATCTATCAGCACAATA ATTGAGAAAAAATTGAATTTTGGAATTCTGATCTGAATCAAGAACACACCACCAAAGGAAGCACCATTAA ACTCCATAGGAAATATAAAGCAGTTCAGCATCCTACATTCCAATTGGAGGGAGAGTTGGCACTGTATCAT GTCTGAGTCCGGCACTGGGCACATCAGTCGGCACAATCTTTCCCTCTTGCTTTCCCCCGATCTTCCCAGC GATGGGCTTCAGGGGTCGGTATTGACCGGGGAACTGCGCCTCCCGGACGGCTCGGTTGGACTCGTGGGTG AGGTCGTGCATCATGATGTTGCGCATACCCTCGCTGCCCCGCCCTGGGAGTCTTGGTCTTGAGGGGACAT CCTTGGTGTCTGGTTGTGAGGTGGGGTGGAAGACGTCCCATACAAAGTTTCCATGGAGCTTGCCCCTTTG CTGTAGGTTGTTTGTTTTACGGCTGTCATAACCATGCTGATATGAGATTCGCTCCATCAGAAGTCTAGGT CCGGTCGGGTTTGCTAATTGTGTTACAGGAACTGGTCCTTGTGCAGGCATGGTGTGCGGGTTACTACCGT GTCTCGTTTGTCCCTTAGGTCTATCCTTATACGTCTTGTAATCACTCCTGCTTATGGTGTCCTTGGTGTA AACTGGGTTCTTATTGGTGTTTGGGTTCTCCCTGGAAGGCCACCAGTGAGCATCGTTGGGGTTGACCTTC GTCTTGACATCACAGATGGGGTCATGAAGCGTCGCACAGTCCTGGATGAGAAAGCCCACACCCTCAGGGT GGGGTTTGTTGTGCCTGGTGGCCGAACTTAACCTTGGTTGGGGTTGGGAAGGATGCTTCTCTCCCTTGAA TGTCCTGGCATAGTGAGAGCCGTTGTACATGCCACGTGTGTTCTTCTCATCGTAGTTTCCAAAGACTCTG TTTGTGGAGTTTAGGCCTTGCGGTGGTGCCTTCTCTGCTCTCGCTTTCGTCTGCATCGGTGGCATGTAGG TTGTCATGATTTCCAGTGAATTTCAAATATATATCAGATAATAATGCAGCTACCAAATTTGCCTCAGTCT GTAACGAGTTCCGTACCAGTGCAAGTGATCTCAACCCTCATTCAACTAACGGGTTATACACGTCGAGCGC TGCATATGCGTTGACTACCGGGATGCACTCCGTTGACTACCGCTTCTGACGTGGGTCGTGCATTCACTGT CGCCAGGCGATTGTCAACAATGCATCAATCGATACGGTCTTTGTACAAGTCGCTATTTGTTTCGCTCTGT GCCTTAAACCCCGATAATAACTCTCAAGTACCAAAAAGTAAATGAGGAAAATGCTCTGAAAGGATTATTG GAAAGTAATTTAGAATCTATTAGTCCGGCAGCCCAGGAGGTTTATTCAACCGAAGGCCGGACAAGCAAAT GACCCCATAGCTGGATGGCATGGACCTTGAAGTTTACAAAAATGCATTGCTGCCGGGTTCTATGCGTGGT CTTCCCTCCGAAATGACGTAATATATGACGTCACTACAAAATGGCCCTATTTCACCATTTTTCAGACATT GTACACATAGCATGAAGTCAAGGGAGAATATCTCAGCCAAATCATGCTTGTTTTGTATGAAACTTTCACA ATGTATTGTTCGAGTAGTGCACAAGAGATATGTAAAATTTCACGAACAGAAATTATTGTTTACATATGCA AATTACGTAATGAAATTTGCATATCATTAGTTTTGGAGATTTCTCGCATAAAAAATTGTCAAAAATCGAT TTAGAAATTTATTTTCTTTTGTAGTGTACTTTATTTGATATTTTTTCTCTCATAATATCATTGTCTTCAT CTATATCTCTACTTTAAGAAAATATATAACAGTAATTGAAAATGACATTATAGACTGTGATTTCAGCCCC CTTTCCAATATGGTGCGCACGTAGAAATCGTGCGTTTTTGGCCTATTTTCACCATATGGCTGAGGTGTGC GAACGATATGCCTACTTTATTGATGTTTCCTGCATTTTGCATGATATTAAATCTTCCAAACAACATATTT TCTTCTTCATTATGTCTCTGGTGATCAATCAATGATTTCAGCAAAAATTGATTGCCCACTGGGCAGTCTA TAGGCTACGTTTTCAGCCTAGTTTTCAACAACGAACCTATACCATGTAAGACTGCATCGTTGTAGTCGAG TCGGATAAGAGGTTCCTGTGTACCATCAAAATATTTTTCACTCAATTTTTCAATCAACGTTTTGGTATTT GTCCAAACTGTCCCGTTAATGAATCCTGATGCTCCCCTCCAAACATCGTGTCCAACGGGGCTCAAAACCG ACATCCTTGGCGGCCCCCCCGGGCTCTTTTTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds