Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041608410.1 PREDICTED: Lytechinus variegatus ras GTPase-activating-like protein IQGAP1 (LOC121415232), transcript variant X2, mRNA CAACGTGTTACGTTACTGTACGTAGCGCGCCGCTCCCCAACTTATACCAACCTGAACCAACTTTAGGACA TAACTGGATTTTTAGCGGATATTTTGGAACTTTTCTCTTCTTTCATGTTGCTAAAGTAGCGAATATGGCG ACAGTTGCACATAATGGTAATGGGATTGCTACAAACGGGAGTGTCTCAAGTGACGACTCCCCCGACGGGC GAGTTTCCAACGAATATGACCATGAAGCGGAAGATATGCCCCAGAGAGCTTCAGCCGATCAGATGGACGC CGAAAGGCTCAAGAGTATAGCCTATCAATATCTCTGCCATCTGGAAGAAGCCAAGAAATGGATGGAAGCG TGCATCAGGGAAGACCTTCCTCCCACCACGGAGCTGGAAGAGGGATTACGTAATGGGGTGTACCTGGGAA AACTGGCACATTTCTTCGCCCCAGACAAGGTACCCCTAAAGAGGATCTATGACAAGGACCAAAGTAGATT CCAGGCCAAAGGACTTCATTTTAGACACACAGATAACACAGTGCAGTGGATCAGAGCCATGGAGGTTGTT GGATTACCATCGATCTTTTATCCAGAAACCACAGATGTGTATGATAGGAAAAACATGCCCAAGACTGTCT ACTGCCTCCATGCACTCAGCTTATATCTGTTCAAGCTTGGTATTGCCCCTCAGATCCAGGATCTATATGG AAAAGTGGACTTCACAGAGGAGGAGATTAGTGCTATGCAGAGCGAGCTTGATAAGTATGGTATCCAGATG CCCCAGTTTCACAAGATTGGTGGGATCCTAGCAAACGAGCTCTCTGTTGATGACGCAGCAGTCCACGCGG CCGTGATCGCCATCAACGAGGCCATCGACAAGCAGGTCCCTTCGGACACGATGACGGCGCTCCGGAATCC CAACGCCCTCATGCAGAACATAGACGACAATAACCAAGATGCCTACCAGGATTGCCTGTATGATGCCAAG CTAGCCAAGGCACAGATCGCCCTCAATAAGTCAACAATAGAAGCTGAAGAAGACATGGATGCCTATGACA TGCTGCTTACACAGGCAGAGATACAGGGAAACCTAAACAAAGTCAATCTAAATACCCAACTGGACAAGGT GAACGACCTCCTGGACACCCAGAATGCATCTGAACTGGTTGAAGTACTGATGAATGCAGGCCTAGGACTC AAGGATGTTTCAAGGGAGAACGCAGACTGGTATCTTAAAATCCTACAGCAGGCTAAGCAAAATAAAATAG AGGCTACCGGGAACCCCTACCCTAGATTAGAGAAGGAAGAGGTCCAGGCTGGTGTAAACGCAGCTAACAT CCTAGCCAAGGAAGAAAAAGATGTGGGTTTTGCAATTCAAAACATCAACTCATTAATCGACAACGGCACC CCGGAACAGCTTGTAGCGGCTCTATCCAGACCGGAGGCTCAGCTCCCACACGTACACCCATACTGCCATG CACTCTACAAAACAGAACTAGCAAGGCTCAAGATTAGCAATGAAGGGGACTTAAACCTGGAGCAACTACA AGATGCAGTCAGAGTTCTGTCAGCGGTAGCTATGATCAACCAGAGCATTGATTCGGGTCAATCGAGTAAG ACGGCAGAACTCTTACTCCAACAAGATGCTTGCCTGGCCGACGTGGAGCAGGACAGTTCTTACCATCAGA GATACCAAGATCAGCTTCTCGCTATCAAGAGAGCTAAAGCTAAGGAAGGGGAAGATTTCTTGACACAAGA AGAGATCCAGGAGGTAGTGGATGCAGTCAACTCTGAAGTACAGGAAGAACACCAACGTATAATGGCCGTA GCAGCAATCAACGAAGCCATCGATGGAGGGGATTCCGAACAGACCTTGAAAGCTCTTCAGATGCCTGTGG CTAAACTAAGAGAGGTAGAAGAGCCCAACACTGTCCTCTACCAGAGAGTCCTACATGCCGAGAAAGAGAG GAAAGGAAAGACACAAGGAGATGACCAGGCTGTATTGTGGCTAGATGAGATTCAAGGAGGAGTTGATAAA GCTAACAAACAGACCATAGCTGCTAATAAATTGGCTGTTGGCATAGCAACGATCAACATGCTTATAGATG AAGGAGACGGCTCAACTCTGGTCGAAGCCCTCAAGAGTTCTGATGTAGGTCTAAGGTCCGTCAAGCCAGA CTGTGGAGACGAGTACCTCCAGGACCTGAAAGAATGCAAAAACAACAAAGCACAAGCTGGTGATGGTGGA GATTGGACATGTCATCGGACACCAGAGGGAGATGATTTCTATTTCAATCTATCGACTATGGAATCTAGCT GGGTTCAACCTCCAGACTATGCACCTAGTAATTCACAACTCTCTAAAGAAGAAATTCAGGAAGTGGTATC GAGAATAACCGAAGCCAAGAACCGGGCCTTACTCTTTGAAGCCAACGAGGGCAACATCGTCACCCTCCAA GCCCATGCCAGGGGGATGATCGCTCGCAGGAAATTCCAGGAACGTCGGAACTACCTTCACAATCAGATCC CTGCCATAGTTAGGATACAGAGCTTTGTGAAGGGATGGAGACAGAAGAGAGCATACAGGGATAGGCTAGG TTACCTCAAGGACCAGGAGCCATCGGTTGTTACGCTTCAATCCTATGCCAGAATGACCTCAGCTCGTAAA GCTTACCAGAACAGACTCAAGTACTTCAGGGATAATGCCAATGCCATCATCAAGCTTCAAGCTTTCTGGA GATCAAACAGAGCAAGACATGATTACCACATCCTCACTCATTCTGACATGCCACCAGTCACTGTGGTTAG GAAGTTTGTTCATCTTCTTGAGCAGAATGAAGTGGATTTATCTGAAGAACTTGAACTTCAAGAGTTGCGA GGGAAAGTCGTAAAGCAGATCCGTGCTAACCAACAGGCAGAGAACGATCTCAATCTAATGGATATCAAAA TTGGACTTCTTGTCAAAAATAGGATCACATTACAGGATGTTGTAAGTCACGGTCGTAAGATGAAGCGTTC AGTCCAAGCCAGCCAGCCTCAGGGTCTGAAGACCCTCAGCAAGGAGAAACGTGACATGCTGGAAGCGTAC CAGCATCTCTTCTATCTCCTGCAAACCAACCCAACCTACCTGGCCAAGCTGATCTTCGCCATGCCTCAGA GCCGAACCACCAAGTTCATGGAATCGGTGATCCTGACCCTCTACAACTACGCAGCCAATCAGAGAGAAGA ATACCTCCTACTCAAGCTTTTCAAAACTGCCCTCGAGGAGGAGATCAGGCGAAACTATGAGTTAGTACAA GAGATGCAGCAGACGTTCATGAGTACGAGTAGGAGTGTACAGGTCATTGACAACAAACCGGCTGATGCTT CCAAAGTTGATAGAATGATGGAGATTGTGACAGGAAACCCTATGGTCATCAGGATGGTCGTCACATTCAA CAGAGGTCAGAAAGGTCAGAGTTCACTGAGGGACATCCTCCAGCCGTTGGTAAAGGGAGTGATGGAGGAT AAGAATCTAAACATCAATACCAATCCTGTTGAGGTCTACAAGCAGTGGATTAATCAGATGGAAACACAGA CCGGAGAAGCCAGCAAGCTACCTTACGATGTCCCATCAGATCAAGCCTTGAAACACAAGGAGGTCTTGGA GAGATTAGATGCATCCGTTACACAGCTTGGTGAAGTCAGCAAGAGGTTCCTCAATGCTATCATCTCATCC GTTGAAATGATACCGTATGGTATCCGTTACATTGCCAAAGTCCTGCGGGAGTCCCTTCATGCCAAATTCC CTGATGCATCAGATGAAGAGGTTCTCAAGATTGTAGGAAACCTGATCTACTATAGGTACATGAATCCTGC CATCGTGGCTCCTGATGCCTTCGACATCATCGACATCGGGGTGGACAAGATGATGACGGTGGAACAGAGG AGGAACCTGGGATCGATCACCAAAGTACTTCAGAGCATTGCTTCAGGGAAACAGTTCCTTGAGGAGAATC TACATCTTACCAAACTGAATGATCTAGTCATCAAGTCCTTTGAGAAATTCAAGGATTTCTGTAGGAAAGT GTGTGATGTCCCAGAGCCAGAGGTCAAGTTTAACATCAATGAATACTCAGACTTTGTGAATCCATCCAAA CCCATCGTCTTCATCTCTGTCAAAGAAATCATTGATACGCATGCACAACTTCTAGAGAATCTTGAGGTGC TTGCCTCGGATCAGAATGATCCTATTCATGAACTCCTTGAAGATCTCGGAGAGGTGCCTTCTGTAGAAGA TATCTTAGGTGATACTCCAAGTGACATACCGGAGCAACAGATAGAGGCTTTGGTCCAGAACATGGCTAAG ACCGAGATCTCTCTCACTCTCACCAATAAGTTTGAGATCCATGAAGACGATGACAGCGACAAGAAGAGGC TATTCATTAAAACCAAGAGGTTACTTGTTGATATCATCAGATGTCAAGCAGGGGAAACCATACAACAAAT TTTACAGACAGAAGCTAATGAAGACCAGGAAGAGGAGCATAATAGATTGATTGATCAGAGGATGAAGAGA GATGCTAAGGCAAGTGAAGAAAGTAAAATGACGAGAAATACATCACAACTAGAAGACAGCAAGCTCCCTC TTGAGGCCAAGAAGCGAAAGGTTGAGCGTAGCCTGAAGATCTTGGCGGAAGCTGAGCTTGTTTCTGAGAA AGATAATTACCAAACCATGGTCAATGCTATCGCACAGGATATTCGAAACCAGAGGAGATACCGTCAGCGA CGTAAGCAAGACATAGTGAAACTCAGATCAACTTATAACGGTCTGGAATCTAAATCAACCTTCTACAACG AACAGAGTGATTATTACGCACAGTACATCAAGACTTGTCTGGATAACCTACAGGCTAAACGATCATCAAA GGCCAAGGCAAAGGACAGCAAGTCGGCCCTGAAATACAATGCTGCCAGACTGCATGAGAAGGGTGTGATC CTAGAGATTGATGGATTAGAACAATCTCAATTCAAGAATGTCATGTTTGAGATCTCGGCTACCAATGTGC CCGGTGTTTTCGATGTGTCGGCTAAATTCCTTGGAGTCAAGATGGATAGCGTAGAACTTGTTTTCCAGGA TCTTCTTCAGCTACAGTACGAGGGCGCCGCGGTGATGAACATGTTCGGCAGAGCAAAGATCAACGTCAAT CTCCTCATCTTCCTCCTCAACAAGAAGTTCTACGGCAAGTAGGAGTTCAGCGATGTCGCCGGGCATGGCA ACGATAGATACATAGGCTTTGTAAAGTTTGTAATATATTGTATAGTACATATGAACTCTTATATTGAAAT ATAGATTGTTTTATGAATGACCTATGTTTGGTACAAATGTTGGAAGAGGTGGGGTATTTTTGTGTGGATA ATGAAGTGAGATGCTTGGAAATGGCGTAATTGATAACAAACAAACGTTGTTGCTTTTGTTTTGGTTCTAT TTACCATACTATTTTTTACTCTTGATGATTTCTTATAATTTTCAATTAATTGTGCCATTTTTTTGTAGAT TCCTGATGTGCAGGATCTATGACCAAATTGTTGAATATAATTCACTTCTATGGTTTTTTATTATAATTAT TATTTTTATTATTATAAAAATAATGTTGAAAAAATAAAATAGTTTGATAAAATACAGATTGTCATAAACT GTTTAATATTGAATTGAGTAGAATTGTTAAGATGAAATTTATCCTTTTTTTAACTAAAAATCATTTTCTC AGGAGAAAATTAAGAATACTTCTTTGACGAATGCAATAAGAAGGTACATGTAGCACAATGGAAAACTTGC AAAATTAAAATAGATCATCTTGACTTATTTATATACAATAGCCTTGTGCTGGAGATAATGATTTTCTAAT TATAAAATAATGTAAACAAATATATATGTGCCTGATTCATATTCATTTCAATCA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds