Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041601129.1 PREDICTED: Lytechinus variegatus RING finger protein 10-like (LOC121409253), mRNA TTTGGATATTTGGGGGCCATTTTTGGAATCAGCTGGCGATTGTAGTCGCCTACTTGTCCGATAAAGTCGG AAACGACTTTAAAGTTTGGTCGCTTTTGGCCATTTGGATCGCCCACGAGCCAAAGATTCTAATACTTGTG CTTTAAAGCACAAGTTCGAGATCAATTTATTTTATATCTTCGCCCTTTTCACCCTATTTTTCAACCTTGC ATTTGTCCACGGTTGACAATTTCTTTTCGTTTCACCAATATGGCGCAACAGTGAAGTGCGATCATGTCTT CAGAATTGTACAACCTCAACCAAGCTTCTCTTGAAGAAGGGGCGTTTTATCGCTCAAATATTTTCAAATT TTATCACTCAGTTGATGGCCAGGGAAAACAAAGATATGGAAAAGAGGGTCACGTCATCTCCAGCTCGTCT GACTTCGTGTGATACGAAGGGGAAGGAGAATGGACGTAGCAATGTTTCCAAGCCTCAGAGATATAATAAG AACAGGCGTGAACCACCACAGGGTCGGACTCCAGGAGATCCTAACAACAGTCAGTCACGTCGACCAGCGC TGCAAAAGAGTAGGGCCTTGGACAAGCGGCCACGCAGCCGATGTCTTCCTGCCAGCAGACGCGATGAGGT GACAGTAACTCAGAGGGCTGAATTTGGTTCAGCCCTTCCTCAGGGTCCGAAGAAACTAAATCTGAATCAC CTCATCAATTTTACTTTCTCTCCGAGAGAGACTGAAGATACCAGAGGGGGCTCAGGATTTCGTGGCAGGT CAAGATGGGGTTACAAACGCTTTAGCAAAGAGCAGTTCTTGCAAGCAAATTGCCAGTTTGTAGTGAAAGC ACAAGGAGATTACAAGCAGCAGTGTGTAGACCCTGATGCTTTAGTGGAATGGGATTTGATTGAACAGATA CGCATGCTAGGACATGAGATGCCGTCCTGTCCCATCTGCCTATACCCACCAACTGCAGCCAAGATTACAA AATGTGGGCACATCTTTTGCTGGCCATGTATCTTGCACTATATCTCGCTTGGGGAGAAAAAATGGCGCAA GTGCCCTATTTGCTATGAATCTGTAATGGCCACTGACTTGAAAAGCGTGGTTGCCAAATCTCTAAAGACG TTCAATGTAGGAGAGACCATCACCATGCGGCTAATGAAGCGGGAGAAGGGATCCATCACCATTCATCCAC ACCGTCTGGACAGTGCTCCTGCAGAATTACCTACATCTCCATGTTTGATGGATTCTCCCAATGAAACCTG CTTTGCAAAGCTGATGATTGCCAGCCCAAGCGACGTTCTAGATCAGATATTGAAAAGAGAAAGGAGAGAA TTGGAAAAGCAGCTGAATGAATCAGTTGATGACTTTGAAAAATCATTTATTCAGAGAGCTATGGAATCTT TGAAGGAAAGAAGTAATAGTCTTTGCCTGGAAAAAGGAGCTTCTGAAACATCAGCACCAAACACTGATGA GAACAAATCCTTAGACCAAAACAAGGATGATAATGACGTGATGGTGTCAACAAACATTCTACCAAAAGAG GATTGCATCGTGTATGCCTCTGCTTTCTCTGATGAAGAGCTAGATGAACCCCCCGATAAACCACCACCTC AAGAATCATCTAAGACTGAACCTACCACTCAACCAGACATTACCCAGGCACCACACAGTGAAGGTTCTGA TGATGTCCTTGAAGTAATCAGTGGAGGTCTAACCAATGCATCTTCTGAGGATGTACCTGAAGCACAGAAG ACTGGGCAGGAAGAAGAAGATAAAGGAGATGAGAGAGAAAAGGAAGGAGTAGACCATGTTGAGTTGTCAT CCAATCACACCGATCTTCCTGGAGGTAGAGAGAGAAAGACTTCATCCAGTAACTCAAATGTCTTTTTCTA CCAAGCTGAGGATGGGCAGCACCTCTATCTTGGTTCCCTCAATGCTCGTTGCTTGACGCATGAATATGGT CATCTAGAGTACTCTCCATTGACCATCACAGCCAAGATTGTTGAGATTGAACATGTCTCTATTACCCAGG ATTTCCGTAACAGGATGCGCCAACTTCAGCACTTGCCATTGACATGTGACGTCAGCATCTGTGAACTTGC CCTACGACCCCCTAACCTCTCACCCAAGACACTCTCCCACTTCTCTACAGAGATTCAAAGGAAGAAACAG AAGAGGGATAAGAAGGCTCGAGAAGAGAAGCGTAGGGAACGCAAGATCAATCAGGAAGAGGACCGTAAGA ATGGTGTCTATCCTAAGGCAAGATATTCTCTGAAGAGCACCAATCAGTTCCCATCCTGCAGTACAGAAGC TGTTCCAGAGAGCTCAGTTTTACCCAGACCCATATCTCCTGCGTCAGTAGATTCAGCAGCTTCCTCAAAC TACAGCTCTGTTCTATCAGATCATCCTGATGATGATCTCATTTATGGTTCCTTACATGACGAAGTGGAGG TTGCCAACTCTCCTTTGGATGCCCCAATGTCTCCATCAGGAGGAGCAAGTGGAGGGGGAGGAGGATCATG GCCCTCCGTTAGTCCAGATAACCAGGGAGGTCATCGCTCATTTGCACAGATGTTGCGTGATGGAACAGCC AAGCCATCATCTCCCATGAAGTCGGGTAATCCACCATCAGCTAGTCCCCAGCACTACGTCACCAGCTATG GCCGAACTCCTAGGCGTGAGGTTACAAGTAGCAATGAAAGTGATAATGAAGACTATGTACCTGTCCCTCT GTTCAAGGATGCCTTCAGTAATGCCATACAAGACGCACTAGATAAGGCTGCATCCATGTCAATCAAGAAA AGTGAGGAAGTAGATAGAGAAACTGAAGGAGGAGGAGGACGGAAGAACAAGAAAGGTCGCAAGAAGCAAC TTCTTTTCTCAACCGCTGGTCATCGCTATAAATAGAATCCCTTTCTGATGCAATCCACCTCCCCCATTAT TAAAAAGAAATGCTTTGTTCTAATTGTGCTGAAGATGTTACAAATTAGGGACTCTGTATACATTGTAATC TCTTGATAAGGTTTTGTTTGAAAAATGCAATTTATTGCATGGAAAGGGATAAAAGATTGTGTATTAAGGT TGATGCAATGCTTTTGCTTAACTATATGGCCCTACATCCAGATCAAATTTACTTTGTTATAAAATGGGCA ATCGAAATCTATGTACATGCATGCTTTTTTCTTCCACTTATCTAAAAAAATAGCTAACATATAACCTAAG TTTTGAACCTCTTTTGCGAGTTTGGACTCTTAAGTCTTATCCTAATGTGATCTTTTACCACTTGTTAAGT ATGAAATGCAGAGATTAGATATGTTTGTTTCTTTCATCTGTGCTGATTGAATAAGCATCATGGTAGTCAA AAGTAGAAAGTTTAATTTGATTTTGGTTATACTTTCGAGGTGAGTAATGTCTCGTTTTCATATCAATTAT ATTTTATAATGATATATGTAGCCATCGTAAAGTACAATATTTGCTGATTTACAATATAATATTTAAATCA GTTTCTGGATAAGAAAGCAGTGTGACATAAAGACATTATTTGATACACTGATTCATAAATAATTTATTCA TTTAAGAATCAAGTTTTCCATTTCCGAGGGGAGAAGTGCAAGGATTGTATGTTTATAATTCTATAATGAA AAACCATGCTTTAAAAGCACTCCATTTATGTTGATGCTTTCTCAAATGAAAAGGCGAAGAATGCATGTGT TTGTTACTTTAATCTTGTTACAAAGCATTTTATAATATTCAGTTGTTTTTGTTTGATTGCTTTTTTTTCT TTTGCCCTTCAACAAGCATTGTTCAGTGGTTCGTGTAAACTTAACAAATACTTTATATTACAGCACCTAT ATGCATTAAAAAGTGTTATAAAACGGGTTCAAGAGTGTGGGAATAGTTCATGCGTATGCAAGTCACATGT TCATGCTTCAATACTACACAACTTTCCAGCTGTGCATTTTTCATGCAGCACTGTGCATTTTGGGTCCATC ATTTTCCCCATAATACCTAAACACTGAGATGCAATTTGAAATATGTGTACTTTCAAAGGGAAGGCATGCT GCTGGCGCTTATTTTGGCGTGTATACTAGATACACCTGTGATGTCATAATTTAAAGCAGGTGTGACCTCT GCATCTGTGTGATTGTTGAAAATTTAGAGGGATGCAAACAAGCTTTCCACTACAGATTTATACTGCCAAC CCGTTTTATAAAACAAATAATGTACATTTTAAAATTTGTGATGTTAAAGGCATCTCGTTGTAGGCATCTC AGGCATTCACAATAACCTGTAAAAGTGCAAGGCGCTAGCGCTTTATGCTTTCGCATATTGCAAATACCAG CGAGTGCTCTGCATCGCCATTCCGACTCATAAATGTGCATTATTTGTATATTATGATACAAATTTATTTT GTATAATACACTGCCCCCCATTTTCTACTATTTTGGTTTAATTTATAGAGCACCAACTACTTTCAATCTA ATCCAAGTTTTCTAGTTCTGAGCAAAAAAAGATGCCAATAAGAAAAGTTGATATATTTGTAAAGTTAAAT TTAGATTGTATTTGTTTTCTTCTGTATATTCATATTCAATAGAGTCAAATTTGGTAAGTGAAAAGCTATT GCGATATGTATATTACGATTTACAAAGTCAAATGAAATGTTTCTAATTTAATATAAACATCGGTACTAAA GGACTTTTAAAGGTATTTTTCAAGCATTACGGTATATACGTTTATATAATGAAGCCTCTTTATCACTTTC ATTGTGTGCGAATTGTGAGTTTTTATATCAAATTTCTTTCTTCCTATTTGTCTCGCCCACCAGAGGTGAA GGCTAGACTTACAGAACCAAATGGCATCCATCCGTCGTCCATCAGTCACAAATGTCTATGATCCATTACT TGGAAACTGCAATCAAAGTTGGATGGTAGATGCATTAGGGGTACCATCATGTTGCGGTGCTGTCGGAGGT CACATATTATGAGCTCAAAGGTTATTTGAGGTCATATGTAATTATTGGAAAGACTTTCTTATAACAAATA ACCTTGCAACCATCGCTCCTTTTTCAACTAATTGTTGGTCATAGATGCACATGGGGGAACCTTTATATTA TGGTGATGTGGGAGGTAACAATGTGAGGTCAACTGTTAAGAGTTACTCTGCATAGGTTGCTCCAATGGCT AACAATCTTTTGTGTTAGATTCATTTGGGATTATGGTGCCTTCAGAGCTGACAAAGTCAAAGGTTATTAA GTTCACCTGCAAAACTCTTGCATGACAGTAAACTTAACAACCCTTTCACACTTTAAACTAAACTTTGGCT ATAGATAAACTTGTGTAATGCTGCCCTTAGAGGTGACATTGTAAGGTCAAGGTCATTTTAGGTCAGACAT TTCAGTTAACCTGCAAGACTTTCTTGTGAAATGAAACTTTGTTAGGGATGTACATTAGGAAATCTTTAAT GTCATGTAGTCATGGGTGGACGAGACACAATCTGGCTGTTGCTTCGTTTGAATTTTAGAATCTTGCTCCC TCAAGAAACTAGGATTCATTTTCAAGTTTGGAGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds