Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041600536.1 PREDICTED: Lytechinus variegatus A-kinase anchor protein 10, mitochondrial-like (LOC121408859), mRNA TTATAGCTGGCGCTGTTTAGAAGGAAATTCAGATAATTTCAGTGCGAAGTCGCGGCTGAAACAGCCAGTG AATTTACTAAATTAAGCTCGATACGATGATGGAATGAATGAGCAACATGCCCCTCTTTAAGAGGAAATCA GAAAAAAGAGGCCAGCAGCCGACAGTACGGCAGGCATCGCAGCATGGATCTCCATCGGGGAAAGCAAGCC ATCCACACCAGAGAACACAGAACCAACAGCATGTGCAACAACTAAAGACCAGTCCTCAACATGCTGGACA AAGTTCGCTAAACTACAACCAGTCGGGTCACCCTGGTGCTAGACCTGGTGCTCCTGATGGAGATTCCAGA AAAGTGGAGAAGATTGATGATGGCACTGCTGCCCTGGCTGCTAGCAGGAGACTTAGAGGTGGTCGGATTG CAGAAGGTGCACAGGTCATGAGTGATGACAGTGATGCCTTGGGAGACTTAGGCACAGGACTTGGAAAGAT CGAGACATCTGACCAGCCCATCAATCGATCAAGATTATGTAAAAGTATGAATGAAGTCCTCCATGACAAT GGAGCTCTGCCCTACTTCATCCAGTACATGGCATCAAGCAACTCCAAACAACTTGTCCAGTTTTGGTTAG CGGCAGAGAGTTTTAGTAATGCTTCATGGTCCAAAATGAGAACAGACTCAATGACTAAGGGGGATTCCCC TGTGATGGGAAACCATGTAACAACGACAATACCAGAGGAACGAAGAGAGAATGTGGAGCAAACTGAAAGC CAAGAAACAAACTCATCTGTGACAAACAATAAAGACACCATATGCAGTTCGAGTGACACTGTGGAAAATG ATTCTGTAAACACCACAAATAACAATGTTGACTTGCCAAGTTTGGACGAGAGTGATTCATCAAAGAAAGA CACACAATCTGTACCTGTAGTTGTAGTGAACCCTCCTGTATCCATGCCCAAGAAGAATGAATCGCCAAGT ATATCACCTCAAAAGACTCATACAAGAGCGATGTCTGATTCGGCGGTAGGTGTTGGTAAGATGTTTGGCA GTGGGGCTACTTTTCAGCCTGGTCATCGGAGAAATAACTCCTGGAAAGAGGTCGACCCAAGAACTGCGGT GGAAAGAGATGCCATCAATATATTCACCAGATACATCTGTAAGGATGCCACATCACCCATTGGTGTACCA GAGGATATTAGATTAGATATTATAGCCAAGATTTGTCCCAAAGATGGCCAGTTCGATCCAGATAGTTTCA AAGCGGCTCAGAACTATGCATTCAGTGTTATGGAGAAGCAATATTTCCAGTCATTCCTGATGAGTGAATT CCATTGTAAATATCAGATAGATGTACTTACTAGTGGGCGTGTCTACCTAGCTGACATACTCTACAACGAT GTAGCCACTTTTTACTTCATGGAGTACCTGGAACAGGAAAATGCCGTCCATCTGCTTCAGTTCTGGTTGG CTGGGGAGAATTTTCAACAGCATTTATTATCTCAACAAGGGCAGTATGATCCTATGGAGGCTCAGAACGA TGCTATGGTGCTATATGAAAAGTACTTTTCATTACAAGCTACCAGCCCCTTAGGTTTTGATGATAAGATC CGCTTTGAGGTGGAGAGTAATATATGTCGGGAAGGGGGACCACTAGCAACCTGCTTCTCTACGCCAATGA GACAAACATATACTACATTAGAAACAATGCATTTTCCTGGGTTTCTTCGTAGTGAGCTCTATTACAAGTT CCTCAATGAGCTCATCAGCAATATCAAGAGTGAGCATGGGACCATGGCTGCTGCAGGGTCTGTTGCCACG GCCCTGGAAGATGATCAGTCCTCTGTATCCTCTGAGCCTGCCACCAGAGGGATGCGTAATACCCTGCTAG CTGAGGGCAATGTGGTCAAGCTCTTTGATGGGGACCTCAACATTGACCAGATGAAGTTTGATCCAGACAC TCTCTGGCAGAGGCCAAGTGCAGGAAACACTGGTATGATGTTTGGTAAGGTGAATCATCTTGGTCAGTTT GTACCAGAATATGAACCAGATCCTGAATCACTTCAGAAGAGAACATCGTCCAATAAGTTCTCTCTCAAAA AACTGGTCACCAAAGAGGAGGACAAGAGTAAAGAAGAGATGGCTTTGAAGATAGCCCAGATGATCATCAA TGATGTCAACAAACAAACCCAGGGATTAGCAGGGGATGATATACCATCCCCTACAGCAGCTAAACCACCA CAGGGATTATAGCACAGGATACATACATCGGTTCATCATATAAGATGATTAACTCTTTAACATGTCACCA ATTAGCAGTGCACCAAATAAAAAACACATAAATCGTATAGAGCTGCAAATCATACGGCATGTTAAGAGTT GATGGCTGGTCCCGGGTGCAAAAACAAAAAACAAAACATGAAAGTAAAATCACCCTTGCTAAGATTGGCA TTTGCTTTATGGGATATGAATGTAGAAATGGCTCTGGGGGTGTTGCATGAAAGTTTCCAGCACTAACTAA ATTGACTATTTCAGTGAAAACCTTGCTTTTGATTGGCTGAGAAGCTTTGGCCTCTGACTGTTACTATGGT AACTGTCAGAGAAAGACATCTTGTCAGTGCTGAAAACTTTCCTATGATGGTCCCCTGATGTGAATACTAG TGCTGAAGTCATCAGTTTGCTATTTGGGTTACTCTTGTTTGGTCCTTATTTGCCCCTACATGAAATTATC TCATACCATTTAGTAGTAAAAAAAATACACTTTGATTATATGGTTTAATTGACATTGTATTCATTCAGGA ATGCACAACATATTGTATTAGAAATGGTATCAAAATTATTGCTGAAGTCAGCAAAATTTTCTGTTTTTGT TAATTTTTCTTGTTTTATTTCTTGCTTTCAAGATTATAATTCCTGCAGAAGTGTCACTGAAAATAGCCTA ATCCTCTATGCGTTGAAATAAATGGAAGGCACGTTTCTTTAAAGTGTCATCAGTTTATGGACGTCCTTGT GTGAGCTAATATACATACATGTAAGAAGCATTTCTTTGAGTTGCCAAGAACACAAGATTTGTGAAGGTTA AAAAACTGGCTTCCTCAATACTGGTTGACTTGAACTGTCTCACGTAAACCCCTAGAATTATTTTCATCAG AAGTTTTAGTTGGGGCATTATCATTGTTTTATTGGGACCAGCCATGGTGGGTTTGAGGGTGTGTGTGTGT GTGTTTGTAAGATATGAAAAGTTTGTGTGCATCTCTGATCTGGGACTCTGATTCTCTTGCCAAAATTGAT AGATTTTGTAATTATAGATGGTTGTTTATCAAATTATTTTGTATGAAGCATAACAGCTCTTAGTGGTAGA TCAATATTGAAGTGGCCAGTGTGATGAAAGGGACAAATTCGATTCTGTGTATTCATTCTTTATTTCTCAA GATGACAAAAATTCTTTGCATAGGAATAGCAATTTGAGTGTAAAAATGGAGGTATTCTCTCGTTTTAAAT TACCACTAGATTTTTTTTCTTTGGTTGCAAAGTAGTAATTTGATTTGAAAATAGGAGGCAGGAGAGAGGA CTACCTCCAAAGTTACCTGTAGATAGTGCACTTTGATATGAGTACATGAGACAACACATAATCTGACGTT AATTATCTGCCAGATCTGGCCAGATTCTCCTCAAAGTTCTTTTTTTTTAGAACATTCTGAGTGCAATCCT TTTCAGGGGTTATTTTGACAATGATTCACTTCCTAATTTATGAAGATAAAGAAAGTACACAAATTGTTTA AACTTTCACGAGACTAAAGCTTTTCAAGTCAATTCAATTCAATTTTCTTAATCTAACAAAAAATATGTGA TGTACTGAAAATGCTGTTTGTAATCCCCAATGTTCTACTGTTTCATATCCATATTATTGTGTCAGATGTG ATCAAGTCAACGAAAGCAATATTTATTATGTTTTACAGGTGGTTGTGTGTACTGTTGTGTGACGTACAGT CTTCAGAAGGTATTTCATACAGATTGTCAAGTGTTACAAGTATTATTGTTGCAATGTTAATTGACGAGTT GATAAGTCAATATTGAGCTTTACTTGCAAATACAAGTAAATACTTTTTCTATTGCTTAGTAGCAATTGAA GATCAGATGAGTTGATGGGTTTGTAATATTTATTTAATCACAATTAAGATATTGCAATGAGATATTTTTG TTGCCTATGAGACATATAAATGATACTAGAATGTTGAATTCAACTCCTCGTGGTAGATCTATGTTTCAAA GGTGGGAGTTGGATCGTTAACCTTTCTTCATTCTCGCTTTGAATTGGATCTAGTGGAAGGAGTTGGACAG TGGTCAAGTTGTATTCACACGTGCCCATATGTCCTTGGAATCTGGGTTAAAGTTAACGAAGTCAGTAAAT CCACCAACAAATATCAGACATTCATCACAATTCTTTTTTAATGTTCTAGAATTGTGTTAATTGTTGAAAA TTACATACCTCTTTCTTACACGCTCCATGTAATTTGCGATGAAATATTTGCAAAGCTACAATCGATAGGT ATTTGAGGGACCCGTTAGTAGGGTGTTCATACCCTTGATAAGCTGTGTTAAGTCAACTTTGGTAACGATA TATTGACTAAAGGGTTGTGGTGATGCTGGAAAGGGAGGGGTAATATTGTACCTTTCCTGAAGTAAACCTC CTAATTTGTTAATGTGTGTGCTCTTCCTTTCCATTTCTGTCAATCACGTGATAGCATGTGGAACTGTTTT ATGTTACATTCATTCCATTGCAAACTTTGAAATATAGATGTCATGCTTAATATAGTTGTCAAATATAGTT TTTATACATTATTCCACATTGTTACACATTTCATATCATTGTCTTTTAATTCAATGATTTTGATTATCTA AAAAAAATAAGATTATGACATGCTGTTTTCTTGTGGATTTCGTGGATATGGTGAATATTATTTTTAAAAC ATTTTTAAAGAATTATGTAAAAACAATGAAACAAATGAAAGTGAGAAAAGCAACATATGTATATTACCAA AGAACAGTTGTTCTATCAGATTACCAATATTTAGGGTAGTGATTTTTTTCAATGAATAGTTTATATACTC ACTATGCTGCATCTCTGCGGGTAGTTTTGTTTCTTGTAAAATATTACAAATGTTACGTTACATGAATCTT TGTAAATCATTATTTTTTTGTAGAAAGTGCTACCCTTCACAAAATATGTAGATTTTATTCTTGTAATGAG CCTAGAGGTGCAACTTTTTACATGTATGGTTGTTTTCCAATGATAAAATCATTTGTTTTATGCCTGACAT TTGTTTTCTTAAAATTTAACAAATCCGAGTTTCTCTGTGTGAATGCAGTTCATGTTAACAGGGAGGTGTA TTTTATCATGAATAATTATAACAACAAAATAGTAATGAGTCATTATAATCATATTTGTTGTTACCATGTG CATGGATGCATATGTGGAGGAGATTTGTCAGTCAATTTATTTTAATTTTTCGTAATGTTAACAGCTTTAA CAATTCCTTGACCATGAAGTCTGCTGTTATTACATTCATTTCAGTATACTTTATAACCCAGGTGCCAGGG TTTTTAATATCAATACATTTCTCTAGTTCTTGAAAGGTTATCTTAATTGCCATTTTGGGAGCGTATAGAA TTAAAAAGGTTTATTTTCTTATGAAAAATGAATTGTTTGCGGCAAAATGTTTACAAGACCTTGTCGGCCT TATACACCAACTCGTAGCCTGATATCACCTATATATAATATAGGTGATATAATATATCATTAGGAAAAAA AGAAGTGGCAGGATTTAGATTTCAAGACCCCCCCCCAAAAAAAAAAAATGGGAGGGAGTGTCATCATTGT GTAAGAGTCAGTCTCCCTTTGTAAGAGGGGAAAATGGTGACTGAAATAGATGATCATCATCAATAGAGAC TTAAATCTTAACAGAAGTCTCTTTATAGTTCTTGGCACTCTAATACTTAACTCTCTTTCAAAAATATTTT CTATGTTTCTTGTGCACCCTAGAAGGGATGGCATGATATAAATGCATAAATCATTATTAAAATTAATAGT TAATGATTGATATTAATTATTATAGTTTACAATCTTATATTTTCAAATATTATTGAGTTAATTGAAAACA TGCATTGACAGATTTGAGACTGCAATTTCAAAATTCGTAACATGGTACAAGTTAATTTAAAGGATAAGTC TTTATCTTAAAAAGTTCACAAGTGAAATAAGACTCACTGCATGTTTTATGCGGAATGAACAGTTCATTGT GTGTAAAGAAGAAAAAAAACAAGATGTAGTTCAACTTACATGCCATGTTGAATATATCACAGCTAGTACA CATTAAAAGGGAAAGACGGACCTGGCAGAGTTCTGACCGTTGCATTTATGAGAGAATATTTTACCTAATG AGCTTGCTTGACTTGATTTTCCCTCTATCATTCGACTTGAAACAACCTAAAATTTGTTTTCCTTAAGATT TGTAATCTTATTCAGTTTTCATGGCATAGAATGTTAGCCTATTTCGATGTAATTTTGAATGATTGGAATG TGGAATTCTGCGGCTTGGTTCAAGCTTGTTATACGATATTGAATATGAAATGTCCAATGTGTATATCCAT GCCCATATTTGTCCATAATTTATGAATGGAGATGTTTTATATATGTGAAAATCTTATGAGGTCCATAATG TTTTTGTATTTGATGTTGAATTATCTTAGCATGATATTGCCAATCACTCATATTACAGGTCAAAAGAAAT ATATGTACTGTAAATGTAAGGTATATTATCAGAAAATCCCAGAAATATAACATTTTTGAGTATATGTTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds