Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041600559.1 PREDICTED: Lytechinus variegatus rho GTPase-activating protein 26-like (LOC121408832), transcript variant X9, mRNA ACATATGCCGCACGCGCCTACAATTTGCTGCTGCTGCTCAAGTCGGGAAGCGCCCACTTTTAGGATTTTT ACAGTATACATGGAATTTATCCAACAAACATCATGGTTTTGTCACCGCTTGAATTCAGTGAATGCTATCT AGATAGTCCTGAATTTCGGGAGAAATTACGAGCTCATGAGAATGAACTTGAGAGGACTAACAAGGCAATC AAAGAGCTCATTCGTGACGGGAAGGCTCTCCTCACTGCTGCACGAAATCTGTCCAAGGCACAGCGAGCCT TCTCAGAAACCCTTTTGAACTTCAACTTTGAATGCATAGGTACTTCACAAACAGATGCTGAAATTGATAT CTCACAATCCTTGAAGGAGTTTGGTCGTCTTATTGCCTTGATTGAAGATGAGCGGGATCGAATGCTTGAA CATGCCAAAGATCAGCTCATTGTGCCACTTGAAGCCTTTAGGAAAGAACAAGTTGGTCCTGCTAAGGAAG GAAAGAAGGACTTTGAAAGACAAACAGAGAAGTTCTGCAAGTCTCTTGATTCATATGTCAGTTTATCAAC AAGAAAAAAGGAAGCTTCTTTACAAGAGGCTGATGCTGCCCTTGATATGGAGAGAAGACAGTTTCACAAA GACTCACTCTGCTATGTCTTCAGAATGCAACAAGTTCAAGAAAAGAAAAAGTTTGAGTTTGTAGAAACGT TATTAGGATTCATGTACAGCTGGCTCACATTCTACCATCAAGGTCATGAAGTATCAAGAGAGTTCAAACC GTACATGACAGAACTTCAACTGAAATTACAAAATATTCGAGCAGGTTTTGATGCAACGAAAGAAGAAGCT GAGAATCTAATGCACAAGATGATGGAAAAACCACATGAAAACAGGAAGAACAAATCAACACAAGAAGGCT ATCTATTTCTCTATGAAAAACGAGCACTGGGTTCCAGTTGGATTAAACAGTACTGTCACTACCATAAGGA TTCTAAGAAACTTGTCATGCAACAATATGTACAGACCCTACCAAAAGTTACCTCAGAGGAAACCGTAACA GTTCTAACATGCACAAGAAGAATGTCAGAGTCGATAGAAAAACGGTTCTGCTTTGACATCACAATCATGG AGAAACCCAACGTATTAACCTTCCAAGCTATCACAGAGGAAGAAAGATCACAATGGATGCGTGCAATGGG TGGAAAAGAACCGGTGTACTTAAATCCATCACAAATTTCCAATTCAGATGAAAATCTTCTCAATGACATT GGTTTTCACTTTATCAGGAAATGCATAGAAGCTATTGAGAGTAGAGGTCTTGATGATCAAGGTTTGTACA GAGTAGTTGGAGTCAACAGCAAAGTTCAAAGGTTAACCTCACTCTGTTTAGATAAGAGGAAACCTCAGAA TGTCAATCTATCTGATTCTGGTGAATGGGAAATCAAAACAATCACAAGCGCTCTCAAGAACTACTTCAGG AATCTACCAGAGCCTCTCATGACACACAAGTGTCATGATGAACTAATGTTAGCAGCAAAGCAAGAATCCA AGACACTGAGAGTAAATGATATCCATGCCATCATACACACACTTCCAGAACCAAACTTTGAGATGCTTGA TCTAGTAATAGGTCATTTAAACAGAGTGGCAAGTAACAGTGAAAAGAACCTGATGACGGTTGCAAACCTT GGGGTGTGTTTCGGACCAACCTTAATGAGACCCGAAGAAGAGACGATGAAAGCAATCATGGATATCAAGT TCTCTAACATCATCATTGAGATACTCATATCAAACTATCACAAGATCTTCAAGACTACACCAGATGGTTT ACCTCCAGCTCTATCAACCAGGACACCTACGACCAACTTCCCCAATTCAGCCTCTTCCTCTATCTCCTCA TCATCGAGTGCATCCTCATCATCCAGGGCGTCACCGATGCATGCCAAATCAGCCACGCCCAACTCCACCC CTAAAGACGGGAGACAGGTGCATGCCATGGATAGTAGCAGTAGCACGGTATCAAGGGAACCATCGCCAAG GAGACCAGGTGAAACCTTAAAGAACAAGTGGAATGATAGATTTAGGAGGACAGACCATGCCAATCGGGCC AATAATAATGCAACGCACCTGCACAATGGGGGCGTGACACAGACCCTCCCACGTACCCCACCTTTCAGGA CGACGGGTAATAGCATGTTCTATACCAGACCTATGAATTCCCCTCCACCGGTTTCACCGAAGCCCAAGTC ACCCCCACCGGTGACGCTCCGATCTAGGACTCCTCAACCACAGTCACCTACCCCTAGTAATGATGCTTTC CCACGTAGTGTCACCCCCAGCCCGAGCTCTACCGCACCTAGTCTCACAGACACTTATCACAGTGATATTC CTGTTTACAGTCAAGTTGTGACGTATCGCTCTCACAAAGACCCTAATGCCAACCAACCCAAAGAGACACC AATGCATGGAACATCAATGAAGAGTCCTCCACCTGAGCAGCACAGTCTGGAAGGCAACCGACCGGGGGAA TCATCCATGTTGATGGAATCGGGACGAGTGGCAGCGCTCAGACGGCGCTTCCTGCTCACACCTCACACAG ACAAGCCAGTTGAGGCTCAGTACAGCAGTAGTAGCAGCCATGAGTCCATAAGTTCACAATCGTCGCTGTC TACGCATTCTTCAAATTCTTCACCACCGACCAGTAAGAAAGCAAACTCTCTCTCGACAGGGGCACCTATA TCAAGACCACCGTTAGCGAGAGCAGATGAAGTACGTAGCACTGAACCATCGTCATCCAAGGGAACCCCCG GTGATCAATCTATATACGACTCAGTTGGAAAGAAGGGAATATGTGTGCGGACTTTATACGCATGTGATGC TGATAATGAGTCTGAGCTATCCTTTCAACCGAACCAGATCATAGTCAATGTACGTTCATCAAAGGAAAGG GGTTGGTTACTCGGCACACTGAACGGGAAGACGGGACTTGTACCAGAAAACTACGTCCAAGCACTGCAGT GACACTGAAGACCGCCCTCACCCTGTACAAGCGCACAACAGGCCAAGATGGGAGAGGGCTTCCTAAAGAA CTCCTAGACAATGGAAGCATGATGCTAACATGCTGTGAACACACCTTCATCTGGAGACATAGTATGGACT TACTGAAAGATGATATGTGGTATATAAACAAAATTGGTTGTAAGCTATTTTTTCTTTGACTCAAATACGC ATACTTTGTGAACAGAGACGTATTCTGTTAATTTGAATTGCAACCTGCATAGGTGGTTTCAGATTCTTTA TTATATTTCATAAAGTTAGGCTCTATTATAGAAAAAAAATCATTTGATATTACTTTTGTTGTGTTTCAGC AGAAGATATATCAATGTAATGCAATGCAAATCATATCAATGCAAACTTGATCTCGGAAATAATTCGACGG TGAATTTTTAAAATCTTCAATCGTCTGAATTTTTCTGAGATTGTTAATATTATTAGCTATGATTACTTTT GATGAGGTTGATAAGGTAAGAATTGCAAAGCGAAGCTGGTTCATGTTTTAACTCGTGCATTATTACATCA TATCTTAACTGCCATCTCTGGATGCAATCAGAATAATCTGCATAATGTTACTGCCGAGTGTTTCTTTGTT GTTGAAAAAAAAGAACAATTGGAATTCATCAGGTTTTCAAAATCTAACCTTTTAGTTTGAATTATCTCAA AGTTTTGGTGACAATTTTTCCAAGATTATGGGAGCTCCTCATGTGATGATCACATAATGGGGTGTTTTCC GACTCGCTTGCAAACCCCAAAATACTTGGTATTTTACCAATATGAAAACAAATTACTTGTTTTTAAATGG GCAATAATATACCCTGAAAGATAATACCCACTAAATAGTAGGTATTTTGCAAAATCAAAGATTTATTTTG ATTTCTCATTTGATCCCATTTACAATTGTGGAAGGTCATTCCTATAAAGGAAATACATATTTTATTCTTT GGGCCTTTCTTTGATTTTGATAATTTATATGATGATGTTGATTATTATGAAAGGCATGAGAGATGGTTAA TTTTCTACTCTTTGAGCCTTTAAGTCAGATAATATGTATCATGTTTACTATTATTATCATGGGAGATTAT GGATAAAGAAAATATCATCGATGATATTGTGTACATATATTTTATTCTGTATCACAGCTGTTCAAACATT TTCAGATACAGTTGTTATATGCATCAACGAGATTGTAAATAGTAATAATTATAACGAAAGTGTGAGTGTG CAGCTATATGTAATCAGAGGAGAGAGAGAATGTATGAGAGATGTTGTTGATAAAAGGTGAGATTAAGAGA ATCGTCAGATAGCCACACCCACTTACATCAGCATTGTATGATATCAAGATTGCATGTTAGTTTCACTACA TTAACCATTGTACATATGAGTGAGTGATGATTTCTTTGTCATTTCCTCTCTGTAAATGTTTGATGAATTT TTGACACATTTTTTTTTGGTGAGTGGATGATTTACATAGTGCTCCCCACGGTCACCTAACAAACGGTTGT ACATGTAATTTGATAAAAAAAACAATGCTATTCAATTAATATATCTTAATAATATTATAAAGACAAGTGC TGTATATGCAAAGCTGTATAAATGTACATATACTGAGAGTGTAGAGATTGTGCAGCCATTCTGAATAGGA TGGCCGATTCTACTTCCCCCTTGTCTATCTTTCTTTGTTTTGCTCCATGTTGAAGGGGTTGCTATAGGTT TGAATGAGCTCTTCACATCAGTGACATTCCAACTGTAATACTGTTACATGTCTTGTCTTTGTATAAATCG TCAATGAGAGAGGGCGCTTGTCTTCTATTTCCTAAGTTAGCTCTTGAGTTTTTACAAGTTTTGATTTTAT TTGATTGATGCATATAGACCCTTGTAGGTATTTTAGATTATTTTTTACAAACATGCTTATTTGATAGTCA TATGTTTAGTTAGTCTGCTTTGATGCAATGTTTTTTTTAATGTTTATTAAGTTCAAAGTTCATGCAGAGT TAACAGACAAATGATTTTTAAACCTGTAACCTTGCTTTTGATCTCTGTCCAAGTTAATCCATACTTAAAA TATCTGTACGATATGTATCTGTGCTATGAGTTTTTTACTTCTTGAAATGTAACCTTGTCCAATTACAGTG ATTGTAATTTGCTTCTAAAAACTTGGCTTTGTCACTCATTCAGGAGGAGGGGGATCACAGGGTGATGAAA TTCATCTAAAGGCCCCGTAAAATTGCCCTTTATTATACTCAAAATCTTGGTATAGTAAAGATTACAAACT GAAGATACAATAATTTGTCCATTAGCTTAGCCAAATCCTAATGATTTACTGACCAATTCAGTTTGTTTAG ACCATCCTCGCTTTTCAAATACATATCACTTAGTTTGACCCACCTCCATACTTAGATTCATTGTAAACTA CATTATTAATGGAGTGAAAATCGAAATTCTTCTTTATGCTCCTGGCAAAACTAAACTTTGACTGTAATTA CAGACGTTTTTTAAATATCTCATTTTGTAAGGCCTTGAAAATTCAACAAAACCAAGGAAATCAGATATTT TTGGTTTGAGTGAAGGTTTCATGGTGTGTTATTCACACACATTGCAGAATGTTTCCTCAGAAATTGTAAA TAAAATACCTGTTTCATACTGCAGTAGAATTATACACTTTGGTTTTGTAATCTCCACAGATTTGCTTCTT ATACAGTTATGTGGACTATACACTGTATTTCCATGATTATTAATTATTCTTATGTCAGTAAAAATTGTTA CAATGTAATCTAATTACAATCCAATCAGGATGCATACTAAACCAATTTAAACAATCCGGTTCTTATTTAC AGTGTTTATATTTGTTTTATGTTATGTTGTATGAAACTCATATATTTTTTCCTGGTTATTTATTATTTCT GGGTAATTCATAAAATAATTTATATGGAGTATCCTGGCATTTCATGTGAGTTAAGGTCCCTGAATTCATC AAGTTTGTCTACATTTTTTTTTTAGGGGTGGGGGCACAAAATTTGAAAGGGGACATTTTTTAGGGACCAA GTGATAAGGATAAGGACAGAATTTCTTTTTGGTTGGGAAGGAGTACAGAAATTTTCTGTAAAATTTGGAT GATAGAACTTCGGGCATAATCACACCCATACTCTGGGCTGCTCAATAAGTGTATACCAATATTCAGTAAA CTTAAAATGTTATGGCTAATTTCTGTATATCTAAATTAGATTGTAATTCACAATTATAATATTCTCTTAA TAACCAAGTCCTATGCTGAATTTGAGATAAGATTGGGGGGATTCCAAAGTTGTAAGTTCATGTGTATGTC AGAGATATATGAGTAAAGGGTTTGAAGATTTCATACTCTATATTGTATACCCACGGAACGTGAAAACATA ACAGCCTTAAAAATGTACAACCCTACCATAAAATCTTTAGAATTGATTAAAGAGTGAATGTTAGATATAT ATTATGTTGCTCATCTAACCATGGTTTATAAATCTTTCTCATATTTCAAGAATCAGTGACTCATTTGTTT TATATCAAGTTAAAGGTACTGACGTGTACATGTAGCAGTGTTTATTTTATTGTAGAGTGTTTCTTTGTAT TGTTATTCTGTATGTCTTATTGACACTTGTAACATTAGTGACTATTCATGTTAAAAACTTGCTTTAACTG AAGTCTACGTGTATTCAAAATCATTATTTGATCAGAAACATATACAATTATTATTAGATATATTTTTGTA GGAACATATATTATATGATTTCTTTATCTTTCCTGAAATCAAATTGTAGCTTTATGGTGTATTGGAGATT GTTTCCTATTTTTTCTGTGAGAGAGTCTTCTGACTTATGTATCAGGAATCATAACCTTTTTGTGCGCGTG TTCTGCCTTTATACTTACAGTTAAGTTTTGAGATGAAATATAATTAAAACAATCATATTTTGTTTCTTAA ATGCTTTAATCACTCTGTAAGCTTTTAAGTGTATTACTCATTATGTTGCATGTAGTAGTCTTAGCAGATA TATCACAGAGCACTTCATTTTATCTGTCAATCATTCTAAAGAAAAAAAAATAATATCCCTTTTTTATTAT GATATATATTGCCAAATTATTGTGACAGATATGATGGATGATTGAGCCTATTAACCCCAATAAAACTTGA AATGT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds