Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038222469.1 PREDICTED: Patiria miniata AP-4 complex subunit epsilon-1-like (LOC119745836), mRNA AGGCGCAGGCAGGCGGCAGTGGGCGATCCGATTAAACCGATCTCATAAACACGTGAGAATCTTCGCCTCG TGGTGGCGCTATTAAACGACGACTGTCTGCTGTGTACTAAAAAGTGGGTGCTACAACTTAGTTGTGTATT GTAATGTAACACAGTCGTGACACGAACAGCTCACAGACTCATCAACCACCAGTGCAAAACGATGTTCTGG TGAATCGCATCTTTGGGTTCCGTCCGCACGGCAGAGGATGTCTGAGGTCATGGAGAAGACATTCTCCTCC GTGTCCGGGTTCATCATGAACAGCCTGGGCTCCAGGAACATGGACGTCTCGCCGGGCTTCCATAACTTGA TACGGAGCATCAGAAAGGCCCGCTCAAAAACGGAAGAAGAGAAGGCAATTCAGAAGGAGCTGGAACTTCT CAAGTTGAAGCTGCAACAGCCTGATACGACAGTGGCTAAAATCAAGGAATACCTGGTCCGGATCATGTAT TGTGAGTTACTGGGCTACACCGCGGGCTTCAGTTACATCAGTGCAATCAAGCTTGCTCAGCAGGGATCGC TTGCAACAAAGAGAGTGGGTTATCTGGCCATCGGCTTGTTCCTGCACGAGAACCACGAGTTGATCCTACT GCTCGTCAACACCCTACAGCGAGACCTCAGCAGCACCAACATGCTGCACAACTGCATGGCGTTGACCGCC GTCTGCAAGCTGATTGGCTCAGAGATGGTCCCAGCTGTCCTCCCGTTGGTTGAAGAGAAACTCAAGCATC CAAAGGCCCTGGTCAGGAAGAAAGCCGTCCTAGCGCTGCGCGCCTTGTACACCAAAGCCCCTCACATGCT GCAGAATCCAGACGCACTCTTCAAGCAGGCGCTGTGCGACCGGGATTCCGCCGTGACTAACGCGGCTCTG CATATCCACAGCGACTTGATCAAGGAGAACCCTGCCGCAAACAAACAGCTAGTGCGCCCTCTAGTGGCTG TCCTGAGGCAGGTCGCGGAACACAAGTTGTCGTCCGATTTTGAGTACCACGGTATCTCGGCTCCTTGGAT GCAGATCCGACTACTCCGGATGCTGGCGAGACTGGGTGAAGGAGACGAACACTACAGCAGTTTAATGTAT GATCTCCTGGATGATGTGATTCAGCAGACCTCGGCACTGAGCCACAATATTGCCTTCGCTGTGCAGTATG AGTGCCTGATCACCGTCGCCAGCATCTATCCACAGGAACAACTACTGATCAAGGCCGCTACATGCATCAG CAAATTCCTGAAATCCTTGAACTATAACCTGAAATACATGGGGATTTGTGCTTTAAGTGCAATACTGAAA GTGTTCCCAAGCTGTGCGGAGGAGCACCAGCTGACCGTCATTGACTGCCTGGACGATGCCGATGACACCA TCAAATTAAAGACTTTGGATCTCCTGTACCGCATGACGACCAGTGTCAACGTGGAGGTGATCACTGATCG GCTCCTGACGTTCCTGCAAAGTACCAGGGACAAATTCATCAGACGGGACCTGCTGTCCAAGATCGTGCAA CTCGCTGACCAATACCAGCCATCAATCCAGTGGTATCTAGACACTATAACTCAAGTCCTGCTGATAGGTG GAGATCTAGTACCTGAAAATCTTGCTAATCATGTCATTACGGTACTAAAGAAAGATATTAGCAATGGTGG TGATATAGGACAACATGCACTACAACTCTACCGTCCCCTTCTCAATCAGACGAACATATCCAATGATCTT TGGCAGATAAGCTGTTGGGTTCTTGGGGAGTTTGCCCACCTTCCCTCCGCGCCACCGGCTACAGAGACCA TCGGCATTCTCTGCTCCCAGCTGGAGCAGCGACGAGATGACGACATGAAGATATGGCCCATGGCCGCTCT GACCAAAGCCGTTGCTAGCTGCGCGACCATCAGCGAAGACGTCGCCAGGGCGATTGAGGTGGGCCAGAGA GGATCATCGACGGAACTCAGACAGAGAGCGTGCGAGTTACAAGAATTGTGCAATGATATGGATTTGATGA AAGAAGTTTACCCCAGACCAGACTCTGCCAAGGAATTGCAGTTTGACTGGACTTTATCCTTCCTTGATGA GTATGTGTCTGAAGCTCTAGCCCAGGGTGCGGCCCCCTATAAACCCAGGCAGCAGCGGCAGGCAGAGAGG CAACAGGCATCCCCAGAGATGAAACCTATGTTCTCAGGGCTCAACTTTGTGCCCTACCAAAGCCCATCCC CTTCGGTCGTGAGTGGCACCACCACCTCCATCTCTACACCTGAAGGAAGGATGGAAACAAAATCCGTCTC TCCAGAACCCTCAATGAGCTCTGGAGCATCGGGAAACAGTGCTGAACCACAGATGGCAGAGAGTTCAACA GGTTTGAAACTGGATGGTGTCAAGAGAGTCTGGGGCAGTCAGGGTTATGCCAAGGCGACACCAACTACAA GATCCCACACTCGGCCTAAAACCAGTGACAGTCAAGTTCCTGTGACTCCGTCTGCTACACCGAGCAGTCC CGCTAGAGTCGTACAGCCAAGTGTACAGTTGAGCACAGCCACGGCCTTAGGGAGGACCACAAGCTCCCAT CCCCCCTCCGTAGACGACCCATCTGAGGAGGACAGTCGGAAGAAGGAGCTAGCCCAGGCATTGTTTGGAG GACTGCACAAGTCTATGACCACCAGCAGCAAGAAACCTATTGACAGAAAGCCCCAGCCAGCGCCCACAGC AGAAAGATCTCGCAAATCACCGGAAATGCCGCCTACCAACGAAGGCCACCAGGACACAAAGGCATCGTCA AGTTCAACAGACTTGCTCCTGTTGTCTGACCTCGACATTCCGTCTTCCGACAGAGACCCTCTTCCGATTG AACCCTCTGAAACTCGGTATCGGGAAGAGAATCCCGACAGGACAGAGAAGCGCCATGAAGTAGGTGATAG TAATTTTGATGGTCTTCTGGGATTGACTGAAGAAAAGACAGTGCACAATAAAAATGCAAAGCATGACAGG CAACCCGCCCTAAATCAAAGTTCGTCAAATCCAAGTGAGCAACTCCTAGAAGAAGCACCACTTAAGACGA AAGAAGACCAACTCTCAGCAGCTGCAAATGTAGAGACACATCTAAGTGGACCTCTGAACAAAGCTGCAGA TAGGACTCATGAACAACAGCCCAGCATGTATGAAGAGTTTAAAGGAATGGATCTGAGCAAAGAATACTCA AGTTTACGGACAGAAGTGGGACAGACCAATTCCGATTTGTTGCAAGATGAGGGGTTGGTTGATCATGGAT GTCCTCATGCAACTGACCCTTGCGGACTTCCGGACACAGTTTATAGTACGGCTCATGAACCCAAAGAAGA GAAAACAAACCACCTTGTAGAGATCCAAGTCCATGCCGACAAAAATCTCCCCGACTACTCTGAGGTCAAG TGTAACACAAACTCAGCTGACTCTCCATCCAGGGATGAGTCCAGTTTATCAGTCGGAAATTCAGACCTCA ACCTCTTGGAAACTAGGACATCCATTTCTCAAAACCATCCCACAACTACGCTGTCATCTCTTGCCCAACC CACCAAAGAGGTTTCAATTCTGGACTCCAATCCCGAGGACATGTCCCTTCAAAGTCCGCCGGAACTCTTA CAAAACCCACTGCCAACGGACTGGCAGAACTTTCCAAGAGGCCGAGAAAGAATTGAACTTTGTAGTGACA CTCTGCTCGTTGTCACGCTTTACAAAGTCTGGAAGCCCGATGCGTTGGGACTTGTCTTCAATGTCTCAAA CATCAGCCCAAAAGACTCCATCACCCAGTTAAAAATTAAATTGGATGTTACCTTAAATTTGAAAGTACAA GACAACCCAAATCTCTCGCCTCTATCAGCAGACGACCTAGACCCGACCGCAACCACAATCCTGACGGCAG AGCTGGGCTGTGTCTCCCCAGCCCCCAGCATGAGCCTGGGTGGGGAGGTAGCCTACAAAGACCACACTAA AACACACCGTAGAATGTTCTTTAGTTCACCCATCCTGGTCAGCGATTTGTTAAGACCTCTGAAATTGCAA ACAGCCGAATTCGGGGAGCAGTGGCCGAGGCAAACACGCGACTGTAAATTCACCGTCGAAGTGGCTGCAA CTGTCTCCATGTCAAAGGTCATGACCCTACTGACCCAGGAGCTGAACCTCCATCTTGTTGAAATAATCGG TAATGAGGGTATTGCCTGCGGCACACTCCTTGGTGGCACTATTTGTCTCCTGCATGCCAAGCTGCCAACT AGCAAGTCACTGGAGGTCTGGGTCCGTTCCTCTAGCAGTCTTCTGTCGGAGTCCATCTCCAAACAGTGCA GGGAAGATGCCGTGAAGAAACTATGACGAGTTGTCTTGCAGGAAGAACTCATTAACCCATTAGCACCTTT ACTACATTGTACTACATTGTATTTATTCACAGGAGAATACATGAAACCATTGAGTACACTGGTAGTTCGG GGGTAACAGGGGAGTAATAGGCTGGGCGGTTTTAAGTCGTACCGGCTCTGAAGTTCTGTCATAAGCCAAT ATGACCCATCAGGCCGGCATTTATCTCCGGTTTCCTTGGCACGAAACCACTGACAATATGTCTGTTTCCC CTGGATGGGATGCCAGTCCATCGCAGGTTACTCCCCAGCTAATACTGGTACCCATTTGTACTCCTGGGTG GAGAGAGGCAAGTTGAGGTGAAGTGACTTGCCAAGTCCAAGGACACGACATATGACCAGCAGCTGGATTC AAACCCCTGACCCTCTGACCACGAGTCACAAATGCTAACCACTAGGCCCCACTCCCCAAACTAGGATTAA TGGGTTAAAACGAAAAACAGTCTTGCCAAATAATTATCAGTGTTGTAGTCGAGTACTTTTTTCCCGAGTA CCGAGTACTGCCGAGTACAAGCACAGGTCTCCGGGTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds