Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038222186.1 PREDICTED: Patiria miniata condensin-2 complex subunit G2-like (LOC119745662), transcript variant X2, mRNA GTTCTCGCGTCTTAACTGCAAGAAAAGTTATCAAGGATGGTGGCCCCAAGTTGCCTACGTGAAGCTTTCC TCCAAGCTGCTGAAAACAACGATCAGGAAGAATTCATTCATTTCCTGCAACGACATAATGCAAAAGACGA TGACTTGACTGTTGAAGAGATCCTACAGAGCTTCTCACGTAAGCAGTATGATCGTCTTTGGTCTGGTCTG AACCAGATGTGTGCATCTACACTCCTGAATTCACCATTTGAAACTGCAGAAGATAGTGAAGAGGGGGCAG GGAACAAGGAGTCTTCCTTGGCAACCCATGTCTGCCTCCAAGGCATTGTTACTGTGGCCTCTATTTGTCT GGCCATGAACAAGCCAGTCATTACACAGGCAATGTTTGAGACAACTATTTACCTTCATGGTGTATTATTA GATCTTCCTGACTCTGCCAGCAAGTTACAGCATGGAATAGCCAAGCTGTGTGAAAAGTGGTGGGTTAGTG AGCACATGGGACGGGAAGAGCTTGTGGCCAACACCCTCATGTACTTTATAGTCAGGAGCCTGCAGTCATC AGCAACCATTGCTGATATCAAGAGTCTGGATAGCCTACGCCATGCCTTAAGCAAGATTAACCTTGATGTG GAGAGCAGTACTACACTGAAGGATCTCTTGGAGCAGTGTATGACCAAACCAAACTATCTCAAGCAAGACA AGGGTCGTCGATTCTTAAGCTTCCTGTTGACATTGAATCCATCTTTCCTTGAGAGACTTCATAAGGCTAT TAAGACTCAGTTACCAGTCTGTCCAAAGTCGGCTATTGACTCTTACGGTGAGATATACTTCAAGGCTTGG AGGGTTTCCAGTGGACCTATTCTCGAGAAACTAGAGAAACATTGTATCCAGGACTTGATGTATCATGCTG TGCATGCCTGTCGTGTGGGCTCCAGATCATTGGCTTCAACATTGAGACAGCTCCTGAGTTACTTCAGCAA GCAGAAGCGCCAGCAGGGTGTGGATAAGATGCTTCTAACTCTCTATGAACCCATCATATGGAGAGCCGTC AAGGTTGCCAATGCCAGTGTGCGTGCCAATGCAGCAGCTCTACTGATTGACGCCTTCCCTCTGCAAGACC CAGAATCTAACAAGGAGGACTCCGATGCACTCACACAAAAACAGTTTGACATTTTCCAGGATCTGCTGGA TGATCCCTGCCCAGTAGTCCGTGTGACCGGTGTCCATGGCATATGTCGTATTGCCAGTGTGTTCTGGGAG CTGATACCAGGCCACACCTTGGAAGCCTTCATGACCAAGCTGATCAGAAACATGGCATTTGACATCAGTA CAGCCGATGTAAGGGCTGCCGTCTTCAAGGGTCTGACGAACCTCCTTGACAACCATCTGAGTCATCCATT ACTGAAGAACTTTCTACCCATCTTGAAAGATTTCATCCATGACAGTTCAGAAAAGGTCCGTGTGGCCTTT GTGGATCTCTTGCTTAAGATCAAAGGGCTGAGAACCATCAAGTATTGGAATATAACCCCTATGGAGCATC TTCTAGCTCAACTGGTGGAAGATTCTGCCCCTGTGGCTCGTCGTCTGGTCGCTCTTCTCTTCAATTCACT CCAGCCAGTGGATAGGACTGGTGAGGTCCAAATAGAACGCTGTATTACCCTGATCCAGACTAACCCGACT GCTAGCAGGGTGTTCTATCAGTATGCACATAGGCATATGTCAGTAGCTACAGCAGGGAAATTCTTGCTGC TTCTTGGCCAATGTATTCTGGGCTGTGTCCGTAAGGCTCAGTCTAAGAACGGACAATCCCAAACAAACCC CACCCAGGGGGCGGGGCAAGATGAAGGGGAGGAGGAGAAGGAGAACGTGGTTAGAGATGAGGACAGCTTG AGTCTACAAGATACTGACATCATGGAAGGAATGTTGGAGATCATTGCTGTACTCTGGACAGGAATTAATG ATCAGCTGGCTAAGCCTGAGAATCAAACCACTAAGAAGCAGCTTGTGTCTAGATTCAGCAAAGCCCTGCC AGAATTCCTGGCTGTCTTCCAGGATGGTCGTGCTTTGTCGGCTGTGTTAGTCATTGCTGGATATGTACCG TCGTCATCTATTCCAACATTCAGTCGGAGCTGTTTGACAACACTGAAGGCCATGACGCCCTCTGCCACCT CGTCTGACTTTGGACCCCTCCTGGAGTGTCTTGTGGCCTGGGGGCGGGGCTCTGATGTACTAGAGCTCAT ATCTGATTGGCTGGAGGCTGCACTCAGGACCAGTCCAAAATCTAAGAAGGTAACTTCAAAATCTAAGAAG AAATCTCGGCAGGTCAGTTTCTGTGATCCTATTCAGCCACAGCCAATTCTTGCATTGAGCTACCTGGACT GGCTACTGTCACAATTCCCATGCCTATCTGTCCTATTGGCATCCTGCTCCGATAAGCTTCAAGATCTCAG CTCAGTCCTCAAGACTACCCTGGTGTGTCTGGAGCAGCGTTTGATGAGCCCTAAGCCCTTGAGTGACCTG GTTACTGATGAGGTCTTGGTGACATCCCTTCAGATGTACTGCAGACTGCAAATCCACCTGACATCTGGTC ATTTGGTCAGTCAGTTGGACCAGAATCTTACAACTCAGGATGGAACCATGAGTAGGGGTGCGACATGGAC TCTGACTGAGCTGATTGCATGGGCAGATAGGGAGATACTCACTAGGATGCAAGGGGGACCAGACCCCAGG ACAGATCACCAGTCAGCTGATGAGGATTGCCCAGCAGCTAAAAGAACCGCAGTAGACACGGCAGATAGGA ATCTGTTGGATCTTGGAATGGAAATCTTGAAGGTTATTCTCAGCATGAGTAGTGAGACCATCATGCTTGG AATCAGTGACAAGGAATTCCAGACTGGATTGGCTGACTTCTGTCAGCTGCTTCTCAAAACAGACTATGGC TTTGAGTTACTTCCAGTGGTTACCAGACTTCTGTATCAAATGAGCCAGCAAGATCTGAACCATAGCCTGA TGGATGACAGGGGGAGGACTGATGATGTAGCATCCAGCCATCTCCTTGGTTGTCTCATCAAGACACTGGT AGACAGAACTATGCAGGATTCAGATGGGACAAAGGAACAAGTACAAAAGACCCTGACTGCAATGAAGCCA GCCATGCGTGAAGTCTTACACTGCTGCCACAAACAACAGCAGCAGCAAGCAATCCTTGGCAGCCCAAGAC ATGACATCATGTCATCCATCATGGCTGCTTCAGTTGCCGAGGTAACGCATCACATGCAAGGAGGTGGGCT GGACCGTTGCCGAGATGTGACTGAATTACCCACAGTATCTGCCTTCTTGTTGGGTCTGATAGCACGTACA CAGTCCAGGCTGGGATCCTTTGTGAGTGAGATGGAACGGTTCACATCATCAGATGCCGTAGGAAGCATTG AGGATCTGACAGCAGTTTTGCATGTACTGTATGCAATCAGCCACGGATCCAAGAAGGCTGCAGGAATCCA GACATGTTTATCAGCTGTTGGTAACAAGCTAGAGGAACTACAAAGACTGAGGAAAGACAACACAGAACAT GATGTGGCCGATCCAAACACCGATAATTTTCTGTTTCAACAAGCGACTCAGATGACCCAAGATGTTCAGA TAGCCATCGGGGGCCCAGCCTAGACAAATATCTCATCACTTGCATTTAAGCAAGTGTAGGTAGGCATTAA CAAAATAAACATAATGCATGAAATCCAAACCATTCCATTTTTAGATTTTTTTGAAACAAGAAACCTTTTA ATCTCTGGTTGTCATATGGCATTCCAGTTGGCAAGACACTGTTTTTTTTACAATGTAATATGAATAATGC TCAAGTTAGAAATATGGTTCTGGGTGCACATTTATTAGAGCAGCATTTAATCCTCATATACCAACACAGT TGAACAAAATATGCTGTAAATCAACTATATTGATTTTAAACAAGTACTTAAAAATTGGGCTATACCTTTT CCATAAGCTTGGTCCTCCGACTGGTGATAGGGTGCATCCCAGTGTCACATAATTGTACACAGATTTTACA ATGTTTCTTACCATAAGAATCATTTATGGTATAATAGCTTTTGATTAACTTGCTGTATTAACATTTAAAA CTTAAATTTCCTTTGTAAATTTCAAATATTTTCAAACATTACGTTTGCATGACTGTCTCAAATAGATACT TTTGACAAGCCTGGTACTGAAGAAATATAGCAGATGGATTGAGAAATCAGGCTCTTGTAGTGAAAATGTA CCTTTCTTTTTGGATCTGGTGGGGCTGATCTTATTTGAGGAACTGGCCTGATTTAGAGGAGAATAAGTTT TGTAAATAGCTGCTCTTTGGATTAAGTAATTAATGATTGGAGTGGTCGTAAGAGTGGAATATCGCCACAC ATTTATTGGATAACCTCAATCAGCAGTCAGTATTGAATAGGAAAATGGACAAAATTCATAGTTGACATAT CCTGGCAAGTTGAGTACTTCAAAGCTCATTGATTTTTATGGAAGTGTCACACTTAACTCAATTTCATTTG TTAAATGAAATTTAACACCTTTTATATGTAAACCCAAGAACTGGATCACTCTTTCAGATTGCTCATCTTA AACTGTCAGTTTACAAGGTCTAATTGTGTATTTTTTGTTTAAAATTCAAGCACCATATTGAAAAAAAGTA ACAAAGTTGCATATGAGTTTCTATGCATTGGGATAAGATGTTTTGATATTTTGTATTGGTGATCAGCATT CCATGTAGTCTTTGCCCAAGACGTCAGTGCTTCAGAGCGATAGTTGCATATTTGTGTAGCACCCTTGCAT AATTGTTTTTTACTTTCTTGCACTTACGTCTTGGTCATTTCGTAGCAAGGGGGCTGGGCCATTTTATGTC AATAAAACTGTCTGTATAAATTCGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds