Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038219799.1 PREDICTED: Patiria miniata transcription elongation factor SPT6-like (LOC119743404), transcript variant X1, mRNA TACATACGTCAACGCGAACGCAGAGTACCATCGAATAGCAAGTGACGCCATTTTTCAAGAATAAAGGGCT TCCGTCACGTCTAAATCAGCTCGGAAATTCCCGTTTTGGAACTGAATTCTTGCTCACGTGCATCAGCTGA TGTGAGAGGGGATTATCAAGTTCCACTGGGGCAAAGCTGAGAATTACTTGACATCCCTATACGAGTACCA GCCATGGCAGACTTCTTTGACAGCGAAGCAGAGGTGTCCGACGATGAAGACATCAAGCTGAGCAGTGATG AGGAGGATGAAGAGGAAGGCGAAGGTGAGAATGAGAATCTGGACGACCTGATCAATGACGAGGATGAAGA GGAGGACCAGCGTGGGTCAGACTCGGAGGGAGAGATCGGCAAGAAGAAGAAACGCAAACGCAGAGAAATT GATGACAGACTTGAAGATGATGATTATGAGCTGATTGAAGAGAACACAGGATTCAAGGTGGACAGGAAAA AGTTCCGTCGTTTGAGGCAGATCTCGGATGAGGAGGACAGCGAGGATGAGGAAGGGATCTCTGGGCCGCA GGCGGAGGCCACCCAACGAGACGCCATCGCCAAGGAGATCTTCCAAGACGACATCGAAGGAGAAGATGAC GAACCACCGGAAGAAGGAGAGATCCGTGAACCAGCTCCTGAACATGACCAGTATGCTGAGATTGAGTCAG ATGAAGAAGAGTCAGATCCAGATGATTTTATCGTGGATGATGAAGGCCAACCCATTGCCAGAAGGAAGAA GAAAGGTCACAAAAGTCACAGATACACCGACTCAGCCTTACAAGAAGCCCAAGACATCTTTGGTCTGGAC TTTGACTTTGAAGAGTTCAATCAGTATGGTGAGGATTACGAGGAAGCGTTGGAGGAAGATTCAGAGTATG AGGATGAAGAAGAGGATGTTGACCTGGGTGACGAAGGACCAAGAAGAGTCCGGAAAACTGGCAAGAAACG AACCTCCAAGAAGAGCATCTATGATGTGTTTGAGCCAAGTGACTTGGAGAGGGGTCACTTTACCGACATC GACAATGAAATCCGGGCAACTGACATACCAGAGAGACTACAGCTTCGCCGGGTACCAGTCACCAAAGCAG ACGACGCTGAACTTGATGAGGAAGCTGATTGGATCTACAGACAGGCCTTCCTGACGCCACCAGTCTCCAA TCAGGAATACTCTGAGCAGGACAGTGGCTATGGTTCTGGCTATGAGAGGAAGCCGCCTCGCACCAAGAAC CGAATCAGAGAGGCTCTGCATTTCATGCGCAATCAGCACTTCGAGGTGCCATTCATCGCCTTCTACAGAA AGGAGTACGTGGAACCTGAGCTGAACTTCAATGATCTTTACAGAGTGTACCATTGGGATGAGAAGTGGTG TCAGCTGAAGAATCGCAAGGCTAACCTGAAGAAGCTGTTTGAGAAGATGCAGGCCTATCAGTTTGATCAG ATGAGCACAGAGGAACTACTACCGGACTCAGTCAGACCACTGACAGAGACGGACCTGGACAGACTGAACG ACGTAGACTCCATGGACAAGCTGAAGGACGTCTACATGCACTTCCTGCTGTACTACGGCCGGGACATCCC CAAGATGCACAACGCCCTCAAGAAGTCCAAGAAGAAGACCGGGAGGACCAAGCTGGTCCGACGGCCGGCC AAGAAGATGGTCAAGGTCATGGTCCGGAGACCAAAGATGAAGAAACCCAAGGAGAACGAGGATGATGACA GTGATGATGACAAAGATTGGACCGAAGAGGATGCCAAAAAGGATGAGGAATCTGATTCTGAGGAGGAGGA GGTTGAGACCGAGGAGGAGGTAGACACTGAGGAAGAGGTTGAGGTAGAAGTCGACGAGGATGGCAATGAG CAGACAGAGGATGGGACCAGTCATCAGATCAAGCAGGCTACCAGGAAGTCTATGTATGCCATCTGTCAAG AGGCTGGACTCGATGCCCTGGCCAAGAAGTTTGGTCTGACCCCGGAGCAGTTTGGTGAGAACCTACGGGA TAACTACCAGCGCTACGACCCAGAGCAGCACCCAGTGGAGCCAGCTGAAACGGCTAAGGACTTCATCGGC AGCAAGTTCCAGTCAGAGGAGTCTGTGATGAAGGCGGCATGCTACATGGTGGCCTTGCAACTAGCCCATG ATCCCCTGGTGCGCCAGTGTGTCCGGCAGACCTATTACGAGAGAGCCAAGATCAGTATCCGCCCAACCAA GAAGGGAATGAAGGAAATTGATGAGACCCACCCATCTTACGGATGTAAATACCTGAAGAACAAACCCGTC AAGGATCTGTTCGGCGATAAATACTTGAAACTCCTGCAAGCGGAGGACGAGAAACTCCTCAAGATCACCA TGGATATCGACCTGGACAAAAGCAGTGACAGCAGCTACCAGAGCCAATCCTACTTTGAGGATATCAAGCA GCTGTACTACCGAGACGAGTTCAGCCACACCGTTCAGGAATGGAACAAGGAGCGCAGCGCCGCCATCGAG ACAGCGCTCTACAAGATCCTATACCCTGAGATGGCTAAAGAGCTCAAGAGCAGGCTGGTGCAGGAGGCTA AGGAGGGCATCATCAAGATGTGTTGTCGGAAGATGTTTGATTGGCTGAAGGTGATGCCATTCCAAGCTGA CCAGCAGCTGGAGGAAGATGAGGATGATTATCTGGATGGTCAGGGTCACGTGGGGCTACGCGTCATGGGG CTGGCATTCACCAGTGAAATGGACAATGCTGCATTCTGTGTCCTGATTGACGGGGATGGGGAAGTGGTAG ACTTCTTAAGACTGCCCCACTTACTGCGCCGGACCAACAGCTACTACCAGCGGGACCGGGAGCTGAAGCA GGCTGACATGGAGGCGCTCAAAGAGTTCCTGTCCAGCAAGAAGCCGCACGTGGTAGCCGTAGCCTCAGAA TCAAGGGTGACCCTGGGTGTGATCAAGGACGTCCAGCAGTGCGTATCAGACCTAGAAGCAGAGCAGCAGA TTGCACCAATCAGCGTCCAGCTAGTGGACTCCAACGTGGCGCAGGTGTACTCTGCCACCAACATGGCTGA AAGTGAGTTCAGGAAGTACCCCCAGCTGTTACGTCAGGCCATCTCGGTAGCCCGCAGGCTGCAGGATCCC ATGGTGGAACTGGCCAGACTCTGCAACTCAGACGAGGATCTCATGTGTCTCAAATTCCATCCCATGCAGG ACTCAGTGAGCAGGGAGGAGTTACAGGAAGCCTTGCATCAAGAGTTCATCTACAGGGTCAACGAGGTGGG CGTGGATATCAACAGGGCCATGGCTCATGCACACTCTCAAAGCTTGGTGCAGTTCATCTGTGGTCTGGGA CCACGTAAAGGACACTCCATCTTAAGGACTTTGAAGCAGCAGAACCAGCGTCTAGAGAATCGCAATCAGC TGGTGACAGTCTGCAAGCTGGGCCCTAAGGTCTTCATCAACTGTGCAGGATTCATCCGGATTGACACAGC CTCTCTCGGAGACAGCTCGGACTCATACATTGAGGTCCTGGACAGCACCCGTATCCACAACGAGACCTAC GAGTGGGCTCGTAAGATGGCCGTGGATGCCTTGGAGTACGACGAATCGGCTGACGATGCCAACCCGGCCG AAGCGCTGGAAGAGATCCTGGATAATCCAGACAAGCTGAAGGATCTGGATCTGGATGCGTTCGCCGAGGA GCTGGAAAGACAGGGTTATGGCAATAAGAGTATCACCCTGTATGATATCCGAGCTGAGCTGAACAATCGC TACAAGGATCTGCGCACACCTTACCACCCAGCCTCCGCTGAAGAAACCTTCAGTATGCTGACTAAAGAGA CACCAGACACCTTCTACAGAGGTAAGATGGTCTTGTGCACAGTGACCGGTATCGCCCGGCGACGGCCTCA GAAGGACCAGCTAGACCAAGCTAACCCAGTCAGGAATGATGAGACAGGGCTGTGGCAGTGCCCATTCTGC CAGCAAGACAACTTCCCTGAACTCAGTGAGGTGTGGAGCCATTTTGACGGTGGTGACTGCCCTGGGCGAT CCGTGGGTGTCCGAACCCGCCTAGATAACGGCATCGCTGGATTCATCCCTACCAAGATGATCAGCGACAA GCAAGTCAATAGCCCAGAGGAGAGGGTCAAGGTTGGCATGACATTACACTGTCGCATCACCAAGATCGAG ATCGAGCACTTCCGCGTGGACCTGACCAGCCGTAGCTCGGACCTCCAAGATAAGAGCGGAGAATTTGCCC CGCCGCGGGACACGTTCTTTGATCACACTCTGTATGAGAAGGACCAACGCAAGGATGAAGAGAGCAAGAA GAAGGTAGCTCAAGCATACACGAAGCGAGTTATTGTCCACCCCTCCTTCCACAACATCACCTTCAAGGAC GCAGAGAAGCTTCTGGTCAACATGGATCTGGGAGAAGTGGTGATCAGACCCAGCAGCAAGGGTTCAGATC ACCTGACAACCACATGGAAGGTGGATGAGGGAATCTATGCCCACATTGACGTCAGAGAAGAAGGCAAGGA GAACGCCTTCAGTCTTGGCACGTCACTCTGGATAGGAAGCGAGGAGTTTGAAGACTTGGACGAAATCATC GCCCGCCACGTCCAGCCCATGGCGGCCTACGTGAGGGACACCATGCAGCATAAGTACTACCGGGACACCG AGGGCGGCAAACGCGACGCCATGGAGAAGGTGATTAGTGCAGAGAAACGCAAGCAGCCCTCACGCATCCC CTACTTCATGAGCTTCTCAAAGGAGTATCCCGGCAAGTTCTTATTGTCCTATCAGCCACGTAGCAAGGTC AGGCATGAGTACGTGACCATCACACCGGAAGGCTATCGCTACCGGGGGCAGATCCACCAATCAATCAACG CCCTACATCGATGGTTCAAGGAACACTTCAGGGACCCTATACCTGGTGTGACCCCAGCCAGCATCCATCG CACTCCCATGGTGGCTGCTCCAGAGAGAACACCGGCAGTCTACAGCTACATGGGCACGCCCATGATCCAG AAATCGGGCGCCGGCTACAGCCAACTCTATGCCACGCCCAGCATGAGCATAGCCACGCCCCGCCAGACAC CCGGTGCCACGCCCCAAATCAATGCCGCCGCCCGCTACGGAGCCTACTCTGGGACATACTCCAACATTCC ATCCTATGCCACGCCCCAGAACAACCCACTAGCCACGCCCCTGATGACACCCTCATACCAGGCAATGCAG ACCCCCTCACAGGGTCCCATTCGCACCCCGCAGATCAACCCCATGCGCACCCCGCAGATCAACCCCCTGC GCACCCCACAGACCAACACCAACCCCATGCGCACCCCGCAGCAGAACCCCATGCGCACCCCTCAGCACGC CCCAGCGGGCTCCACCACCCCTCAGATCAACCAGATGCGGACCCCTCAGTACCAGCCCACCCCCAAGCAG AGTTGGGGCAGCAGCTCATCGGCCTCAGCCTCGGCCACGGCTCAGCAGGTGGTCAACGCACTGAAGCAGC AGCTACAACGAACTGGTGGACCAAGATCCAACGCCGCGTCTGTTGACTGGGCCAGCCAGGCCGCCCAGTG GGCCTCCAGACGACAGGACCAGACCAAGGGCAAGAACCCCCAGGCCAGCCCCGCCAACCCCTCATCCCGT TCCTCTTACCATCCCAGTCCCAGGAATTACCCCCAGCCTAGCCCCAAGAGCTACTCCCATCGCAGCCCCA AACCCTCCCCGTACCCAGAGCCCAGCCCCATGTCCATCTCCACCACCCCGGCGCATAGCGTGGGTGGGGA CGCTACTCCACTCTTCGACGAGACTTAGGTTGCACCCTTAGCCCAGTTGGTGCCCAAAAACCCATTTTGT ACCTAGAGCAGGCACCTTGTGCCTAGTGTGAGTGGGGATGCCACTCCACTCATGACCAGATGTAGGTTGC ATCCTTAGCCCAGTCGGTACCCAAAAACCCATTTTGTACCTAGAGCAGGCCCCTGTTGCCTAGCATGGGT GGGGATCCCAATCCACTTATGACTAGATGTAGGTTGCACCCTTAGCCCAGTCAGTACCCAAAAACCCATT TTGTACCTAGAGCAGGCCACTGGTGGCTTGTATGGGTGGGGATGCCATTCCACTTATGACGAGATGCAGG TTGCACTCTTAGCCCAGTCAGTACCCAAATCTTGTACCTATAGCAGGCTCCTGTTCAACTCCGCCACCCC GCACCCAGTATGGATGGGGACTCACACCTCTCATGGGCAAGACTTGGGTTGCACCCTTTGCCCAGTCAGT CCTAAAAATTCACAGGTTGTACCCATGTAGATTCTTTGGGTGGAATCCACCACTCCTGAACCAACTTTGG AAAGAGTTCGCTGTAATCCATATTATGAATGATTAACGATGTAGTTTGGTCCCAGATTTGGCCATTAGTG TTCAAATCTATGCGAAATCATGTTAGTTCACAGTTGCTGTTGCATTTTGGCATTGTGTCAGTTTTTGCGG ATTCCCCCGACCACCAACCACCCCCTTCCCCAACCCCAAACACCCCCACCCCCAACCTTCCCCTACGCCA GATTACAGTATTGTTAAATCTTGATTGTCAGTGTACCGAGGCTTTGCAAATTAATGCTGTACGTGTATAT TTAATACTTCATCTTTGCTCAAGCAATGTTTTTGTAATACTAATGTACATGCAATTAACCCTTTGCTTGA TCAGTCTCAGACTGTCTTACGTTTTATAGTCCACTTCCTCTGCCATGCATTTGTATACAGTTTAGTTAAA AAAAACCAGTCAGATCACTTTCGTGTTAAAACAATCTGACTAGTCAAATCCCATCAACAGACAAAAGAGG TAACTGGTAGGTACAGCTGGCATATCAATCACCTCCAGTCAAAGCATGGATATGTGAAGTTAAGAAAGGG GATTCCGTAACTTGAAAACAGTCACTTGCAGTAAGTTTGTCTGCTGTGATGGCGTAGCTGAAATTACCAG CCAGAGAGGCTTGTGCATTTGCTAAAGCATTTGTGCAGAGATGCCTGCTTGGTCACAGACCCTTTGTACT GTGTGCCGTTACTAAAGACAGATTTTGAAATATAAATTCAGTAACAGAAGAAAGTACACTGCGTCTTCAT GTGTATCACAAAGGAACAAAGATGTGCCCTTGGATCTGACATCACATGCAAAGGGTCTATTGGGTGCATT CGAGTATCATAATTTAAGAGTGACACGCTAACATGAAATTTTGTCCCTGCTAAAAAAAAAACACAGAAAA ATTACTGTAAATGTAATATTTAATGGAGGTTATTTGTGAGTTTGGGCTCAATTTACTATTGAGCAGGTTG TGTATGATTTAGTGACATCTTCACAACAGAAGGTTTTAGTGTATACATTAAATATGATTTCATTTTGTGC CTACAGCTAACGACTTGTATTATAAAAAGGAAAAAAAATGTACAGTAACTGACTGCTTAGATAGCTGTAG TGTTGGAAATATACACATTACTGTTGTTATTTAGATGGTTCTGCAGTACACAACTTTAAATTCCAATCCT GAAGTTTGGTTGATGATATCTCGGCTGTTGAAAAATCGGACAAATCGTAAACTTTTTAAAACGCTGACGT TTTGTTTAAGACAGTAAGGTCTCTTTCCTTGTTGGTAATGTTTTGAGATGTGTCTTGTATTTATTTGATA TTTTTTTTTAATTTGTTTCTTGCATTGGTTCACCAAAAATAATGAGTGAACTTGGTAATGCTGTTTAGTT CGTAATGTAAGAAAATGAAGTTGTTTATTTTCTATGTCTGGAGATTTCCACTCGTTGAACTCAATAATTA GTATTTGACGAAGTTTGGCATGTCGGAAAATGTCCAGCAGGGTAACTCTACAAAATTCAGGTCCAAAAGC ATGACATTTTTGTTCCTGTCCCTGTTACCTTGGTACTTTGTAATTTGCCATTCAAGTATCATTAAGAATG ACTTCAAACTATTTTTTTATTTTGTAGGGTAATTGTGTGCTATTGATAATCACTCTTGGAGGACGACTGC ATTCCGGAGAGCATCCGTATTTATCAATCATAGATGTCAGATGTAACAGGGAACAGAAAAAAAGTGGACC CCAAATGTATACAATGACTCAGCTGCAGATGTTGGCAAATCGAGAATTTGCCTTTACCACGAAAGAGGTT CATTAAATTAAAACAGTTTTTAAACTTTCGTTTTACCCGCCAATCATGATCAATATTGAAAAAACCCAAA TCACTTCTCAGTTTCAATTGTGTAACATGTTGTTTTTATTTTATTTTATTTTTTAAATATTGCAGTCCGT GAGAAAGTAGTACAGTACAGTGGATAAATCGACTGCAGTCATTCTATTTTTCATTAAAGCTCTAAACAGT GTTTCTGTAAGGATTTCACAATTTTTGCGTAAGCTATGTCAAATAAATTTGATATCTATCAAATAAATTG AA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds