Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038218710.1 PREDICTED: Patiria miniata hypoxia-inducible factor 1-alpha-like (LOC119742597), mRNA TTGCACTCGACTCTATCTCGCACACTGTAGTTTATCAGACGAACGTACGGTAACATGCAATGCGGACAAT CCTTGGCAGTGTTCTGAGACTGTGGCATTACATGTTGGACTAGTACTTTTTATTCACGACCGAATCTCTT CATATCAGATAGGTAGATTGATAACCTGTTGATCCGAAGAAGTTCCTTTGTCTAGGATTCACAAGTCGAC TTACCGAGGACGAAAGTTTGCGGGAAAAGGACCGAAATTATGCATCGTCCAAGCTCAAATTCAACGTCGC CACCAAAAGAAAAGAAGAGGAGGAATTCGGAGAAGAGGAAGTTGAAATCGCGCAATGCAGCCCGGACCAG ACGCGAGAATGAAACGGCCATCTTCTATGAGCTCGCCCATCAGTTGCCCATGCCACACAGCATGTGCGCT CAGCTGGACAAAGCTGGCATCATGCGACTGCTCCTCAGCTACCTCAGGATCCAACATTTCACACCGAAAG CGATCAAGTCTGAACCGGTGGACGTCGATGAAGACCTACCGCTCACGGCCGAGCAGCTCATCGATAACTA CTACCTCAAGGCTCTGGACGGCTTTGCCATGATGCTGTCACAAGAGGGCGACGTCATCTTCATCTCCGAA AACGTCTCGCATTACATGGGTCTCAAACAGATTGACTTGATCGGGCAGAGCATCTACGATTTCTCCCATC CCTGTGACCATGAGGAGATCAGGGAGCATCTCGCCGACCACCACTGGATGGGCCAGGCCAACGGCAGCAA GACCGTCAAACGACAACAGCGGGAGAAGCACCGGTTCCTGATGCGCATGAAGTGCACGCTGACGGCCAAG GGAAAGATCGTCACCCTGAAGGCTGCCACATACAAGGTGGTGGATTGCAATGGAATCTGGAAGGCGGCCC CATCCATGATGACCTCCAACGGCTACCCTCTGCCTCAGCTCAGCTGTCTGTCCCTCATCGCTATGCCCAT CCACCATCCAGCTAACATAGAGATACCCATGGACAAACAGACTTTCCTTTCCAGGCACAGCATGGACATG AAGTTCACATACTGCGACGACAGAATTCAAGAGCTGCTTGGCTATGATCCCGATGACTTGGCGAACCAGT CCTTCTATGATTTCTACCATGCCTTGGACAGTCACACCATCGACAGGTTCCACAAAGATTTGTTTGCCAA GGGCCAAGCCACCAGTGGACGCTATCGCTTCCTGGCCAAGAAGAGTGGCTTTGCATGGATGGAGACCCAG GCCACGGTCATCTACAACAACAAGACCAACAAGCCACAGTGCGTGGTCTGTGTGAACTACATGATCAGTG GTGTGGAGAATGAGGACGTAATGCTGTCCACTCACCAGGTTGATGAAGCCATGCAGATGAGCACAGAGAA GACCTTTATGCCTCGGCCAGATGGCATGGATGATGATGAGTTCCCACTCTACCTGACAGGATCCAAGAGC AGTGTGATGAACCCGGAGGATCTGACTTACTTGGCCCCAACCCCGGGCAGCGCCATGGTCCCCTTGGATT TCCCCAGCCCTCCGGCCAGCATCCCCGAGACTGACCTCATGCAGGAGCCAGAGCCGCTGGACGGACAGCA GGAGTTTACGCCGTTCTTTTCCTTCATTCCCTTGGCTCCTGGCAACAAGGAAAAGCAGTCTAAAGACGGG GGAGTCATGATGAACCAGGATTCCTCCCTGCGGAATGTGGCCACCCCTGACTTGATTCTCCCGGACAAGA ACTCCCCCATGAGCTCCAGCAAAGATCCACTCTTGCTGGATTGCACCGCAGAGGCTGGTGGCCAACTCGA TGACCTGGCAATGAGGGCGCCCTACATCTCCATGAGTGACGACTTTGACTTCAGCGGGGACAAATTGATG GTGGACACCCAGCTGCCGGAGACCTGGGAGCCCGTGGATCTCTTTGGAAACAATTTGAACAGCACTGCCT GCATGGACTCTATGATATCGCCATCCTTCAAAGATCAGCAGCCAGAATTGCTGAGTCCGTCATCTGGCTC CCTGACTTCTGTGGGCAACCCTTACAGTCCACAGTCCCTGTCCCCGTACAGCCCCCAGTCAGTCGGGTCT CCGATTACACCCGTCAACAAGCTGTGCCAGAGCCTGCCCAACCTGTGGTTGTGCCGTGACGACGACTTGG TCGGGCCGACCCCACCACAACAGCAGAAGCAGCAGGGTTACTGGGAGACCAACAAGTCTCCACTGGCAGC TTCTCCTCCGACCCGCTCCCCACTGATCAGCCCAGCTCTCCCCGGCAAGCATCCCCCTAGACCGGAGGTA CAGCAAGCTCTGAAGAGGAAACTGGAGACCCGTAACGGCAGCCTGTACAGCAAAATGGCTCGACTGAACG AGGGAGGAAGAGACTCAGGGGGTGGGAACAATCCAGGAGGTGTGGAGCTGGATGCACTGCAGCCTCCAGG AGGCGGTAAAGAGAGGAGCACTTTACAGTCGCTGTTGTTTCAGCCAGGTGGGAGGAGCATCAACAACCCT TTTGGCCACTCCTTGCTGCTGCAGAAAGTTGCTCAACAGGTGGTCAACAAACGAGGTGGCGGTGTCAACA ACGCGGGCCTGCTGGCCACCATCTCCAGCGGCAAGCAGGAATTGTTCCCCAAATTCCAGACCCAGCCCTC GCCCGGAGAGGACGCGGAGGATTTGCTGGCTGGCGGCTACCTGCCCCTGATTGCTAGGTATGACCTGGAT GTCAACACTCCCCTGCAGGCCTCCGCTGGTCTCCTGCAAGGTGAAGAGCTGCTGAGAGCATTGGACGTAC CGTGAAGTTAAACGGTACGGCAAGGAATCTAGTCGCTGACGGCTGCACAATGTGATTTTAAAAAAAATCA CCCTTGCACCTGTGTACAAAAATTGCTATGTAAATAGAGTGTGTTGGTGACCAACTTGAATCCATATATT TTAGTACTGTACATGAATCAAAGGAAGGAATGTGAGAATGAATGGATGGTGTGCAGCACTACAATTGCAC ACATTGACTGATATCTAGTTTGAATGTGAAACAAAAACACTCAGTAGATGTGAACCTTGGCACACTTCAC AATGTGCACTACTAGACAATTTGCACACATATAATGCATTGTTGATTGCCTGTTGTGAATGCATGTAACT GTATACATTTGTATAACACTTGTGCGCCAGGATGCCATTTTGTTGTATGCCATGTAAATGTGTCAGCACA CTACGAATGAGCACCAACGTGCACATTTGAAATGTGTACCAGTGTATACACTGTGAACGCAAAGCTTCAC ATCTAAACTTTTGATCAAGGTAAACATTCTGACATGTTCAAGCCAGGGATGAGGTGTGTTTCTGCTGATG AGATTATTTCCATGAAATTACTCTTGTATTAAGGTAAGCTTATGATACAAACTATATAGTAGTGTTTAGC CGACTTGACTTACAACGTATATTGTAATAATGAATTGTAATGTACCAGTATGGTACATGTATATGTTTTA TCGTTCACCGTGTTATTTGCACAATGATTTTGAAAGAAATGGTTTGAACAATGGTGGGTTTTTTTGGTTG GTGTGTTAAGTGAAGGCAGGAGGGGAACTGTTTATTGTGAGCTGGTTGTGACACAGTAGAGTGATCCGTT GTGGGCCTCTCCCATGCCACACTGCAGGTGCATGCATGTCGGACTTTTGTGCAAGCATGTCGGACTTTTG TGCATGCATGTCAGATACTATTCACGGTTTTCATTAGTCAAAACATCATACAACAGTACTCAATGGATCA ATCTACTGACCACAGAGTATGCATTACCATTTTTACAGCCACAAAGTCAAGGCAATGTTTGATTTATGTT TTTGTTGAGGGGGAGGCTCTATTTTAAGATTCTGTTATAAGTTTCTTTGGTGTTGAAATTGGTGTCTTTT GAAGTTTATGGGGGGGTTAAGGCATACTATTAACATTTTAGTAAAAAACAAAGGCAGTGTACGATTTTTG TCAGTGGTTACCTACACATTATCGCACAAAACAGCTTTTTAGAAGTATTTTTAATACGGAAAAAATATAA GGTAAATAAAGTGTAAGACATGTCTTTTCCCCCTTTTTATTCAATTTGTCATTTTATTCAAAGAGAACGA TTTTACATTAAGGTTCAATACCTATGTGTACATTCGCTGCCTGCCAGTTTAGTAAAAACAAATTTAATGT TGTGTTTTAATTTGTGCAGAAAAGCACAAACTTTTACCACTGTTAACCCTTAAGTATTTTCATACAAAAA AAAAAGCTTTGTAAATTGCAAATATTTAGAATTTGGTTAAATTTTTTTGTTGATACATATGACTGCCCAA GTTAGGTTGCTTCTTAAAGGTACTGTACACCATTTGCATATGTCATAATTTCATGAAATGGACCGATTAG TGGAGTAGTAATTTTTAAACTAGTCCGAAATTTTTGCGTCAAAAAAATTGCATATTTCACAAATTCCTCA TTCAAACATAGCTAAATAAAGTGTTGAGAGCCCCTTTAAGCAGCGTTGAACTATTGACAGCAAATAGCTG TATGAAGTTTGGCCCATGTTATAAACTGTACTACAAACTGTAGTATCTTCCGGAGCCATGCATGGAAAAT ATTAACGGATGTAGCATTTGAAATTCTTCTTTTTTCTCACAGCAGTGGTTCTGTCCGAACCATCTGATAC AAAATTCCTTTTTTCTTGAGATTGCCAGCATACCAGGCACTAAGTCTTAGTAAGATTTCACAGGATGCTT CACATTATTATTATCTACTTACAATCAAATAAGCTATTTCATAATATTTTGACCGTTTCGTTTTGGAATG TCTGCAAATGGTGTACATTGCCTTTATTATATATGCCTTCCTAATACTATGTAGCTGTTTGTACAGCAAC AACGAAACGTGGAATACAGTGTTAATTATTATACTAAAAGTGCATGCACAGTATTTGACCACTTGAACAC GTTTATACATATTTCTCATCAAAACAATGGCCTACTAATCGTATCTACTCCTTTATTTTAATGAGAAAAC AAATTGATTTACACTGTGTTTTATTACAGAAGGGCATTTTTTGTGCGAGTTTAAGGAGAAACCGCTGTTA TTAAGTCCAGCTGTCCAGGACACGTGAACATAAATGAAATATTTCAAAGTTGAAATTAAACTCTTTTTAA GATACAATTTTTGAATCTTTTGCGTTCATTTTTGACACTGTTTTGCGTGAATTAACTCAAAGTAGTTGTA TGTGGGGGAAAAGCTATTGTATTATTTGAAATTTCCTTGCGTGATATTGTTCAGAAGTTCTGAAAATAAA AACTGGTGTATAAGACCATTTGACTTGTTTTTGGTATTTTGAGAATACTGTGGTTTGTATTGTAAGTAGG AATCCAGTCCCGTACTGCCCTTGATCTGCTATGGCGAAAAAAAAGAGCATAGCTATATAATCGCTGTATA AGTATGTTACCTTTGAAATTGGCTGAAGTATATATATAACCTTTTAAAAAATAAACAGTTGTATTAATAT CGCTCCCTTGTGTGGTGCTGAAAGTATATTTGTAACGTTACCTTTATATCGCAGGTGTACTGGATTTGTT GAACGACTACAGTGATAATCTAATGTGATCTAGCTGTAAAATAATGTGATCTAGCTATAAAATTACATGT AATTGTAGCAGGTGTTGCTCAATCACGTAACTAATGGTCTGTATTAAAATACACAAATATGAGAGACTTT TGTAACCCTGTTTCCGTAGAGTTAAGCACAGTAGGAAATTGTGTATGTGCCTGATCTAAACTTACAGTGC AGCACTAAATAGTCTTAAGGCACAACTGACCAATACAACAGGTGTATCACTGTATCTGTTGCCAAGCATC TACCTCAACTCGCCTTGTAGTATTTTGCACACAACACATTTGGCACATTCATTCGCACTTAAAAGGATTG TTCAATTTTCCTTCCTCGCAACATATTCATTAACATAACAAGATTGGTCTGAAGCAATTGTTGTTTTTGA GTTCTCTGGACATGTTGAATATTGTGCCTATAGCAGAGTCATAGCCTGTAAATTTGAAATGCTCAGACAA ACAAAAAAGTACTCCAGCTTGGCATGCACTGCATCACATAGCAGTATAGACTATTTTGGCGCCATCCATT GTCGGAGGTGGAACCAGGCTTGAGCAAGTCATGCTTAGGTAGTATGCATGAACTCGCGACTCCTTCAACC AATACGGTTACCAAAATGCATGCGTGCCTCGTCTTTAAAGGCATGCAGCATGCGAACATGGTTCCACCTC ATAATGGCTTCTGATCTTGTTCACTGAATTACAGGGCCAGAGTGTGCACATACATGCATGGAGGAAAGTT GAGTGCCATGGTGCAACACGGGGAAACTCTTGACAATATATTCCCATTTTGTGATTCACACACAAAAAGT ACACTTGCCACATGATTGTCAAACCAATTTTCTGCTAAAAACAGACGTGCAACAGGGTGTTCACAAAAAG AAGAAGGAACTTCCAATCCTAACAAGACTTTACAGTGTTTTTTCAATTTTTAAGGCAAAAGTGTGGAGTA AAAAACGAGGAAATCAGCTGATTTGAGGAAAAGTTGCACGTTTGTTAAAAAAACATGGCTGATCTGGAAG AGTTACATTTATGCACTCTATCAGTCTGCCTCTGTCTTGTAACATTCAGAACCATTTTGAAAATATATCT TCAACTGGATTGAATAAAACTACCCGTGCATCTTAAGTGCCATAGCTAGACATGTGATGCAGGACAGGCT TACTGCCTGAAAAATGAACTAGTTTAATACAATACAATGCTGTAAATGTAAAAATGCCCACTGTAGCTTG ACTGTAACTGAAAACTGTAGCATTGGCTACAAAAGTAGACCAGCAACTTTGTAATATCTGAGTACATACA AGAAGATACTGGGTTAGTGATGGTGAGGGTTCATGACAATGTCCAAAACTCAAGCTTCATCCAACGCTAT TGTTCCTGAATCTTTTTGAAGCAATTTTCAGGACCAAGTGCAAAAAAAATCGCATCCGATAAGATGATTT CAGTGTTCTTGTTCCAGAAAACGGAGCTAATTACGCTGAAAGGCCCCGATTCAGTGGCCTAAAAATGTGG AGCTGAAACTGAGATTTGGGGGGGGAAAAAACTTCCCCTAAAAGTGTTGAAGCATGTAGGATAATTTACA ATTTTCTGAGAATAGTACCTACTGATTTAATAACAGAAACATTACTCAAAGGGAAGATAGGACTGGTATC AAACAACCTTTGAAATGATTCCATTTGAAATGGTATCATTTGAAGACGACAATTTTTTAAGGTGGTTTCA AAGCACTTTTTTTACGTACACAAACAACGGAATCCAGTTACATTTTCTCCATATTCTCAAAATGTATAGT ATCCACTGAGCTGAAAGTTCTACAGGTTAGCTGTTGTGCACGTTACTGAAAATGTTGAGCAATTCTGTTT CTTCAATAGAAAAACAAACTGCACAAAATGCTAACCCAAAGTTCATGTGACAGATATACATGCAGGTGGC TTACGACATGGTTATGGCATAGGGCCATTATTGTGTTTGCCACACAAAGCTACCTTTAATTATAAAAAAA AACTGAACTAAACCAACACTTAATGAGGGCAGAGGGAGTTGATATTAGGCTCTCATTAAGATTAATTCCA CTAAATTGTTAACTGATTGTATGAAAATTCCCCTTGCCAGATTGTAAGAATAAGCATTACTTGAAATTAT GTGAATTGGCATTCATATTAAATGACACAGGGGGCTCTGTTGAATTGACTGAGTAATGAGTAATGTAGTT ATGATACAAGTTGTTTATAGGGTTGTGTTATAAACTCAATAAAACATGGTTGTAAAACAGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds