Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038217714.1 PREDICTED: Patiria miniata splicing factor 3B subunit 2-like (LOC119741814), transcript variant X1, mRNA TCAGCCTGAACCACAAGAAGCCATGCTCGCAGGTGGAGTGAGGCAAGAGGATGTGCCAGGCATGTCAAGT GATTTGCTACAACAGCAGCAGATGGTATACCAGCAGCAACTGATACATCAGCAGCAACAGCTCCTTGCTG CTGAACAGCAGCGTCAGCAGCAGCTCAAAGAACAGCAGCACATTTTGGAGCAACAGCAGCAGCAGCAACA GCTGTTTGAGGAGCAGCAGCGCCGGCACTTGGAGCAACTGCGTGCACAGCAGCTGGAGGAGCAACAGCAG CAGCAAGCGCTGGCAGATCAGGCACGCCAGCAGCAGCTCCTGGAGCAACAACGCCAGCAACAGCTTGAGC AGCAAATGAGGGAACAGCAGAGGGTGGAGCAGCTCAGACAAGAGGAACAGAAGCGGCAGCAGCAACTTGC TGAGCAGCAGCAACAGCAGCAGATGTTGGAGCAGCGCCGCCTACAGGAGATGGAGCAGCAACGCCAGTTG GAACATCAAAAGCAGCTAGAACAGCAGCAGCTGCTAGAACAACAGCGCCAAAAAGAAAGAGAGGAGGAAG AGCGGCAGCAGCTGATTGAGCAGCAGAGAGCTCAACTGGCAGAGGAGCAAGAGCGACAGAGGCACATCCT GGAAGAACAGCACCGTCAACGCCAGCTTCAAGCAATGGAAGAGCAACGCCATCAACAGCAGCTGCTGGAA GAGGAAAGGCAGAAGGCCCTGATTGAAGAACACCACCGACTCCTGCAGCAACAGCAGCAGCAAGAGTTGG AAGAGCAACAGCGCCAGCAGCAACAGCAGCAGCAGCAACGTCTCCTGGAAGAACAGCGCCAGCAGCAGCT GATTGCACAGCAGCAAAGGTTGCTAGAAGAGCAGCGGCAGCGAGAGGAGGAAGAGAGACGACAGCAACTG ATCATGGAACAACAGAGATTAATAGAAGAGCAGCGTCAGCAACAGCTGGAAGAACAGCGGCGGCAGCAAG AAGAAGCTATGCAGCAGATGGAAGAGGAGAAACGCAGACAGCAGGAACAGGCTATGCTTCAGATGGAAGA AGAGAAGCGTCGGCAGCAGGAGGCAATGCAACAGCAGCAGGAGGAGGAGCAGATGCGCATGGAGGAGCTG CGTCAGCAACAGCAAGAGGCAGCAGCCAGGGAAGAGGAGAGAATGCGAGCACAGCAAGCAGAGATGGAAG CCAAGCAGCTGGCAGCAGCAGCAGAATTGGCAGCCAAGGAGCGCGAGGAGGAAGAGAGAATTCTGCAGCA GCAGCAGGAGCTTATTGAGAAGGAGAAGCAGCGGCTGTTGCAACAGCAGCAGGAACGGATCAGGCAGCGA CAGGAAGAGAAGCAGCGTCAAGACGAAGAGACTCGGCAGAAGGTCCTGCAACAACAGCAGATGCTGGAGG AACAGCAGCGAGCTGAAGAGGAGCAACAGATGCGCTTGGAAGAGCAGAAGCGGGAAGAGGAGGAAGCTGA GGAGGTCGAGCTGCTACGGCAACAGCAGATTGCCATGGAGATGCAGCGACAAGAAGAGGAGAAGATACAG CAGCACCAAGAAATGCTACGACGTCAGCAGCGGCAGCAAGAAGAAGAGGAGCAGGAGGAGCGACAGCGTG AACGAAACAGACCACCGCTCCTGTCAACTCCTCTGATGGGACAGAGAGGCCTACCTTTACCGCCAGGGAT GGACCGACCCTACATGCACAGGCCCAGGGGAATGCCTGGACCACCAGGGGTGTCAGACAGAGATATCGAC AGCCCAACCCCAGACAGCCGTGAGGATGAAAATGACCAAGATGATGAGGACATGATGAAGGGTAGCGTTG AGCTACCACAGGCCCTGGAGAAAGTGCTTGAATTCAAGACTGTGCGCGCCCAGGAGCATGGGGTCACGGA AGAAGAAGACTTGGCTGGGTTTGGAGTGCAGGGTGATGATGCAGAGGAGGCCGCAGAGGAGGATGAAGAC GACGAACGAGAAGATGATGACGAGGGATTCGAGGAGGCCTCGTCAGGGGGGCCACAGCAAGCTAAGAAAC TGACCAAGAACCAGAGGCGTAAGAAGAAGAAGAAGCGTCGCAAGGCAGCCAAGAAAGTGGAGCAGTTGTT GCAGGCCCAGGAGGGCCCCTCGGTCGACCAGGCAGGGGAGAGCGACCATGGGGTAGAGGTGGAATATGTC CCTGAACCAGTGGACATGAGTGACCCCAGCGTCAGGCAGTTCAGCAGAATCTTTGAGGCATTCAAGTTGT CGGAGCCAGGCAAGCCAGATTCAGCAGCCAAGGAACCGAAAGTCGAGAAGCTTCCGGAAATAAAGAAGGA TGAACCTAAGAAGAAGACGTCAGACGATGAAGACTCAGATTCTGACTCCGACAATGAAAAGAAGGAAGAC GAGGGTCCAAAGATGTCCAAGAAGAAAATGCGTAAGATGAATCGTCTGAGCGTGGCGGAGCTCAAACAGC TGGTGCACAGGCCGGACGTGGTGGAGATGCATGATGTGACGGCCAGAGACCCCAAGCTACTGGTCTACCT CAAGGCTTACAGGAACACTGTTCCTGTACCCAGACACTGGTGCTTTAAGAGGAAGTACCTGCAGGGGAAA CGAGGCATTGAAAAGCCGGCATTTGAGCTGCCGGAGTTCATCATGCGAACAGGCATCATGGAAATGAGGC AGGCCCTGCAGGAAAAGGAGGAACAGCAGACAATGAAGACTAAGATGAGACAGAAAGTTCGGCCCAAGAT GGGCAAGATAGACATCGACTACCAGAAACTTCACGATGCCTTCTTCAAATGGCAAACCAAGCCCAAGATG ACAATCCACGGTGATTTGTACTACGAAGGCAAAGAGTTTGAGACCCGACTCAAGGAGAAGAAGCCGGGAG AGCTGTCTGATGAGCTCAAGACGGCGCTGGGCATGCCCATAGGCCCTAATTCTCAGAAGTACCCTCCCCC GTGGTTGATAGCGATGCAGCGATACGGTCCACCCCCCTCCTACCCGAACCTGAAGATTAGCGGTCTGAAT GCTCCCATCCCTGAGACCTGCTCCTTTGGCTACCACGCTGGGGGCTGGGGGAAGCCTCCTGTAGACGAAA CAGGCAAGCCACTCTATGGAGACGTCTTTGGAACCAACGCAGCTGACTTCAAGGAGGAGGAAGAAGAAGA GGAAGTGGACCGTACCCGCTGGGGTGAGCTGGAGAGCGAATCGGAGGAGTCATCGTCTGAGGAGGAGAGT GAAGAAGAAGAAGGTGAAGAAGGAGAAGTGGATGAGACGGGACTGATCACACCGGCAGACGGTGGTCTGA TTACCCCCAGTGGGTTGACATCTATTCCCACCGGCATGGAGACGCCGGAAATGATTGAGCTCCGCAAGAA GAAGATTGAAGACGCGATGGACCAAGGCGGAGAGACGCCCTCGCTCTACACCATCCTGCCGGAGAAACGC ACCGCAGTGGGCGGGGCTATGATGGGATCCGCCCACGTGTACGATACCACAGCTGCCAAGAAAGCAGGCG GTGCTGGGGAGGGCGTGGCTATCACACTGGATCCCAGCGAGTTGGACTTGGACACTGCGGCCATGGCTGC CAAATATGAGCAACAAGTCCGTGAGCAGCAGAGCCAACTGGAGAAAGAAGACTTCAGCGATATGGTGGCT GAGCATGCCGCCAAACAAAAGAATAAGAGAAAGAAGCAGAGCCAAGACAGTGGGAAGGCAGCCAAGAAGT ACAAGGAATTCAAATTTTAGGGTTTTTTTTGTTTTCTTAATTATGTTTTAAATAGGCATTTTAGAAGTTT ACTCTCCAGTTTCAGATATTTCAAAGGCTTTGTGTTGGTTATTTGATTTCAGAAAAAAAAGGTGAAATGA ATGGTTGATTACATTGAACTTTAATTAATATTTGATTGCAAGAAGGCTAGCATTACTACTGGGTACGAAC CATTTATATTTTTTTTACAAGTGGATTCGGCCAACCTCAGTTTTACACTTGATTTTCTAGGGAACGTTGA TTTTTTTTCATGGAAACCATACAATGAAAACAGGAGAGGAAGTACGCATTTTTGAAAATCAAACTTTCAT TTTGGATGGGTGTTGTAATTACATTATTAAAAAAAACTTTCTTTTTGTAAACCTTAAAGGCCTCTGGAAT CAATCGATTTTGACGAAAGTAAACTTACCGAAATTGATTCAGCATGGATGCCTGATATTACTAAAATGTG ACAAGATTTTTTTTTGGAGCGCCTTTCAGTGTTTGGCTGGTCAGCTTGTGCTTGGAAACAATTTAGGCAC AAATGAAATTTTAAAAACGCCTGTTTTGTTTTGTATTGAAAGAAAGAGAGAAGACATTGATATTGTAATG CGTGCCAAATAATGAGAATTTTCATGCTGAAATTTCAAATTGGCTCAAAAGGTTCAGCAATATCATTTGG GCCATCAACTAGCCGACAACATTTCGGTCTTACAGCTGTGTGAAAAGCTAGAAGCTATAGACAGTGTTAC ATAGTTTCCAAAATTGGGAGGTCGTTGTCGTGATGCCAACTTTCATCAAACAGTTCTCTCCTGCAGTCTG AATGTATATCTCTTGAAACTTTGAATGGTTTAATAGTGTTGACATAACTGTTTAGTGTGGGTCGAATAAC ATGCCGAAAATGCTTAAATGCCTAGAAGTATTTTAAGCAAACATTTAACAAATATTAAGTTCACACGACT GAAACTGTAGTAATGTCAACTGAAAAACGGCCAACGATACACTATTACTTCAAGTGCACAGCATTTTTTT TCTTAGAACAATTTTTAAAGTTCTGCTACATTCCTACATTTTCGGTCATTTCTCTAGTAAAAATGGTCGG CAAAAGTTCTTTTCAAAGAGCCAGTAATATTAAGTTGGCCTTTTTTATGTTGTAAACTTGTTAGGTAATT TTAAATCTGATTACCCACTGTGAAAGAGCCTGCACTGTCTTCATCTGAATAAAAGTACCCGTTTGGTGTT TTGTAACAAAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds