Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038216709.1 PREDICTED: Patiria miniata putative ATP-dependent RNA helicase DHX57 (LOC119741061), transcript variant X2, mRNA ATTGAGGATCAGGATTCGATGAACAACACAAGATGAGAAATACCAGCCTGGCTGAGCGCGAGCGAGCCAT GAGCAGGCCTCTAATACAGCTACAGCTAGCTAGGCCTGCCATTGACATACTTATTAATGGCATGAGGAGC AGTAATTAATTTCAAAACTGGTATCAACCGTGGTCAACATGAGCAATGTTGTTCGGAAGAGGGGTGGTCC CAACAGAGGGGGCGGAAGAGGAAGCAAACCCAGAGGAGGTCAAGGAGGAGGTCACAGAGGAGGTCAAGGA GGAGGTCACGGAGGGGGCAAAGGCCAAAGGTCTTCTGGTTTCGCTGCAGAGACTGGAGCGAGAAAAGGGA ATTTTGACTACCTTGATGATGACTTTGTCTTGATGCCAAGAGAGACATCTGACAGAAACAACAGGACTGG ATCAAAGGGTTCATCAGGAAGAGGTTCATCAGGAAGAGGTTCATCAGGAAGAAGTTCATCAGGAAGAGGT TCAACGGGATCATCAGGGAGAGGATCCTCAGGCAGCGACAGGCAACAAGGGTGGGGCAGTGAGGGAACCC ACCAGGGGCGTGGCAATGATGAGTATCGCGGGCGCGGCAGGGGTGGGCCCAGAGGGCGTGGCAGGGGTGA ACCCAGGAAGGTGCAGATGCAGCAGCTGCGCATGACAACTGAGAATCAAGAACTGGTCCGGGACGTCTTG AGGGAACTCCAGGGGAGTGAACCATCAGAGATCAGTGAGCAAGGTTATGATGAATTACACAATCGAAGTG ACTTCCGCTTCTGGACTCAAGACAAAAGCATGGTTTTGGAGGGTGCTACAGGCTTCCAAGCAGAGAATGA AAATGAGTCTCAGGAGGAACTTGTCAACAAATATGCTCTGCTTAAACTTCTAAAATACGGCTTTCACCGG GATCACTGTCTTGCAGCCTTGGAAGAGACAAATGGCGATGTTGGCCAGGCACTGGATCATCTCCTGCAAG AATGCTTCCACTTTTCACCAAAGCACAAACACAAACGGAAACGGACCAAGAGCCAAGGGGGAGGGGAGAC CGATGGACAGATGCAGGAGGCCCTGCAGCAAAGAGAGGAGGAAGCCATGGCTCTGAGCTCCATATACCAG GAGGACTTTGACGAGAGGATACCCAACCGGGTCTGGGTCATGAACTTTGACCTGCCCCATGTCACGGACC ACTTTGTGGAGAAGGCCCGCAGCTTACAGAACAGGAAGCAGCAGATGGTGGACAGGTCTCTATCCAGCGT CGGTCTCTGCAGGTTCTATCAGCAGGGCCACTGCCGGTTTGGTTCCAAATGCAAGTTCTGGCATAAGAGA GAGGGTCACAGTAAGTCCTACCAGGAGCTCTGCGACAATGCCGATGCTCAGGTCTATCAGCTTGAGATCA GATTCCCCGAGGGTAACCTGTATCCCATGGAACCTCCTCTCGTGGCCTTCCTCACCTCAAATCCAGACTT CCCCATCGGCAAGAGCCTCAACATCTCCAACTTGTTGTTTGAAGAGGCCAAGGAGATTGCTGAAAGTGCC TCCCCGGTCGTGTTCTCGCTTGTGTCAGTTCTTGAAGATGCTCCTCAGATGATTAAAACTCTTGAACAGA AGCTGTTGCCACTGAGTCTCGCACCTTCCGCAGCTAAACCGGTTGAGAAGAAACCGGCCTTTAAGCAGGG AGCTGGTCGTGGAAAACCTCAGAATGCTGCAGCTGACAACTCGACTGGACACAAACCTAGCAATTCGTGT GCTTTAGCCAAGGGAAAGGACACACCAGTTGGCAGGGAGCAAAGCGAGGACTCTGATAGCACCGATGAGG ATGGAGGGAGCTCCTCCTCAGAAATAGAGTCTGAACCTGCACCAGTGAAAGCTGAGAAAAACCAACCAAT GAGAAGAGACAAGAGAGCCATTGAGAGGGAAAACAGGACTCTCAAAGAGCAGTTTAGGAAAAAGAAGCAT TCTCATTCCTACAAGAGCTTCCTGGCTGATAGGCAAAAGCTACCAGCATGGAAGGAACAGGGAACCATCC TGGAAACCCTGGACAGAAACCAAGTAGTGGTTGTAAGCGGAATGACCGGATGTGGAAAGACAACCCAAGT GCCCCAGTTCATCTTGGATGCCTCTCTCAAGATCCCCGGCCCCTCGCTGTGCAACATCATCTGCACTCAG CCTCGGCGTATCTCGGCCATGGCGGTCGCTGAGAGGGTGGCCAATGAGAGGGCTGTCAAGCTGGGTGGGG TGGTTGGGTACCAGATCAGACTGGAGAACAAACAGTCTACTTCCACTCGACTTCTGTTCTGCACGACTGG TATCCTGCTGCGTCGATTAGAAGGAGATTTCAATCTGGACGGTGTCAGTCACGTCATCGTGGATGAGGTG CACGAAAGGAGTGAAGAGAGTGATTTTCTGATGATGGTCTTACGAGATCTTCTGCCCAAGAGGAAGGACC TGAGGGTGTTACTGATGAGCGCCACTCTCAATGCAGAACTCTTCTCATCTTACTTCAACGGCTGCCCGGT CATTGACATACCAGGGAGAACATTCCCAGTTGAGCAGTACTTTCTGGAGGACGCCATTGAATGGACAAAC TATAAACTGGAAGAGAATTCAACCTACTCTCGGCCGATCAAGCGCAGCAATGCCGTGCCGTCAGACAGCA CCTCTAAACAGTTGAAGAACTACCAATACGGAGGCGTGGAAGATGAGATCGAGGAAGCGTTGGCATCGAC CTCCATCAAACCAGCCAAGGACAACATGAGAGATTGGAATCTCACCGTCCAACAGCTGGCTGTGAGATAT TGTGATTACAGCAAGTCTACCATAAAGGTCCTAGGTACCATGGATGCGGAGAAGATCAATAATGACCTGA TCGAAGAACTGGTGTCCTGGATTGTCTTTGGGGATCATGAGTATCCGAAGGATGGAGCCATTCTTATCTT TCTCCCCGGACTGGCTGAGATACTTTCCTGCTATGAACAGCTTCAAAGTTCTCTCGGTGGACCCAGAGCC AAGAAACAGTTTAAGCTGGTGCCCCTTCACTCGTCCCTCTCCAGCGAGGAGCAAAACTCCGCCTTCCTCA AGCCTAAGGAAGGAGTCACCAAAATAGTCATTGCTACCAACATTGCGGAGACCTCTATCACCATTGACGA TATCGTGTACGTCATTGATGCAGGAAAAATGAAAGAGAAAAGATACGACTCGTCCAAGGGCATGGAAAGC CTGGAGACGACCTGGGTGTCTAGAGCCAACGCCTTGCAGCGTAGAGGGAGGGCGGGGCGTGTCACTGAAG GCGTATGCTTTCATCTGTACACTGCCAACACATACCAGCATCATCTCAGGGACCAACCGATCCCAGAGAT TCAGAGAATCCCTCTGGAGCAGTTGGTTCTCAGAGTCAAGATCTTGGACCTCTTCAAAGGAATGTCTGTA CGGGAGGTATTGTCCAACCTCCTAGAACCTCCACCAATCTCCAACAATCAAGATGCCATCCTCAGACTGC AGAATCTTGGAGCGCTTGATAAAGAGGAGGGCTTGACCTCCCTGGGTTATCACTTAGCCTCCTTACCAGT TGACGTCCGCATTGGTAAACTCATGTTGTTTGGCGCCATCTTTCGCTGCCTGGATCCAGTGCTTACTATT GCTGCTAGTCTCAGCTTCAAGTCACCCTTCGTGGCACCATTTGACAAGCGAGACCAAGCAGACAAGAAGA AGTTGGAGTTCGCCATCGGCAACAGTGATCACCTGACATTGCTGAGAGCTTACAAGGGCTGGACCACGTG CATAGGGCGAGGATCTTACAACGGATACCGGTATTGCCATGAAAACTTCCTGTCCTTAAAAACACTCCAG ATGATTGCAAGCATGAAGCACCAGTTTGCAGAGCTCCTGTCCAGTATCGGCTTCATCAAGGAAGGACTGA GCTCCAAGATGATGGACCGAAAGACAGGAGGGAATGGGGATGCAGTCCTCAAGATGTGCGGACCTGAGGG CAATGCAAACGCAGACAACTCGCGGCTCGTCCTTGCCGTCCTATGTGCTGCCCTCTATCCTAACGTGGTA CAAGTGATGACGCCAGAGTCCAAGTACAGCCAGACTAGTGCAGGGGCTGTGCCTAAGGCACCCAGGCCAG AAGATATCAGGTTCAAGACGAGAGATGATGGCTATGTGAACGTTCATCCATCATCAGTCAATTTCCAAGT GCGACACTATGAGAGCCCCTATCTGGTGTTTCATGAAAAGATCAAGACATCAAAGGTGTACATCCGTGAC TGCAGTATGGTGTCTGTGTATCCGCTACTGCTGTTTGGAGGCTGTGATCTCTCCATAAATATGGATAGAG GGCGCTTCATCATCTCCCTGGACGAGGGCTGGATTCGATTCAATGTTGCCACTGTCGAGGTGGCCGAGCT GGTGCGGGAGCTGAGACTGGAGCTAGACCAGCTTCTGCAGGACAAGATCCAACAGCCCAATATGGATTTA TGCACCTGTCCCCGAGGAAGTCGTATCATCACAGCCATCGTGCAGCTCATTACAACGCAGTGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds