Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038216606.1 PREDICTED: Patiria miniata ribosome-binding protein 1-like (LOC119741028), transcript variant X7, mRNA CTGACCAATCACAGTACGTATTTCCCGCTCATGCATATCGTATGTAGGCGTGTAATTTTCCTTTAGGTTG CCGTCGTTGGAATTTGGATTGTGAAAAGATCGTCAAAAACACTTAAGTCTCTGGTTTGTGAGATTAAGTG GTGAAGTCCAGATCAACCATGATTGCTGTGGATTTGTATGAGCCCCAGGTCTTAGCCCTGGTGGTGTTTG CTAGTTTCATCGGCTTGTCTGCCTTAGTGTATATCATCTCCATCTTCACCATGAAGGAGAAGACATATGA GGAGGCCATTGCAGAGCAGCGAGCTCGCCTTGACAAGGAGCAGCAGCAACATCGAGATCAGCGGCAGAAA CGTCGTCAAGCCTTTCCTCGTAAGAAGAAAGATAAAGTGAATGACATTGACCAACCATCACCTCCCCCAT CACCTCCATCACCACCCGTGGAGGAGGAAATCAAGCCGATAGTTGAGCAACCAATCGCTGCTGCTCCCCC TCCTGCTCCTCAACCTAAGACCAAATCTCCTAAGCAAGGGAAACAACCCAAAGTACCACAGCAGCAGCAG CAGCAAGAGCAACAACAGCAGCAGCAACAAAAGCAGCAACCGCCCAAGGCGAAAGAAGCTGCTAAAGAAA CCTCAGCTCCTTCCAAGGAAGCACCTTCCAAGAAGACCCCCAAAGAGGCTCCTGTGAAAGAAGCACCCAT CCAGAAGGCTGCGTCAGCAACTACCAAATCTGCTCCTCCTCCAGCCAAGACCCAGACCTCTCCCAAACCA ACCCAGAAGTCTAGCCAGAAGCCCCAGAAACAGAAGCCAGTTGAGGAGAAACTGCAGAAGAAAGAAGCCC CAATAGTGGCCCAGAAGGCTCCAGAGGCCCAAGCTGCACCCCAACAACCCAAGAAGGAGGCTGGTGCTAC CCAGAGTTCCCCAGTGAAGAGCAAGAAAGGGGCCAAGGCTGGGGCACCATCGGGGGAGAAAGCAGCAGGA CCAGCAGGGGATACAGCTGTGGACACTGGAGCCCTGAAGGCCAAGAATCTTAGCGCCATGCTCAAGACAG CAACTCTGTCCAATAAGGAAGTTCAGCAACTTGTGGAAGTGTTGCTCAACAAGAATGGTGGATCCGCTGC AACATCGGAAAACTGGGTCAAGGCCAACCAACGTGATCCAGTCCAAGCCATGAAAAAACAACTGCAGGAG AAGGAACAAGCCTTGCACAATGAGATGCTGCTAGCCCAGTCCTCATCTCAGAAGGTGAAGGAACTACGCG CTGAACTGACCCAAGAAAAAAGCCGAAGGATCCAAGTAGAGTCTCGCTACAAAGAGACGGTGCATAACCA TAGCCGTGAATGTGATGCACTCAGAGCTAGAATGCAACAGAACCATGATGCTCATACCCGTGACACCCAG AATCTTCAGGCTCACATCAAGCAAGTAGAAGCCAGGAATGATAACACAGGGGTAGAGGCATTGAATCAAC TCCGTGATGAGAACACTCAACTCAAGGCAGAAGCAGGACGAAATGCACAACACTTCCAGAATGAAATCCA GAAGATAAAGAACCAAATGTCCGCCAATGAGGGTCGCGTCAGACAGGGTGATGATCAACGACGTAGCCTG GAATCCAAACTCACTCAGTATGAACAGCGGATCAAGGTGTATGAAGCAGGCCAGGCTGGACAGCGTGAGA ATGAAACAGCTCTCTCCAAACGTCTTAGCGAGGTCTCTGAGGAGCTACGTAAGGCAGAAGCTCGTCTCCA GACATCATCCAGAGAGGGAGAGAAGACGTTGGAACGTCTGCAAGCTTTGATGAAGGAGAACGATACTGTC AAGAAACAACTGCAGGAGGTGTATCGTCTGGATAGTGAGAAAAGTACACAGATGTCAGCTATGGAAACCA GACTCAGGGATCATGAGAAGCAAAAGATGAACCTTGAGGGCGCTGTTAATGATTCCAAGGCCAAGTTGTC TGAGCAGGAGAGAGCATGCACCCAGAAGGATAAGGAAATGACGAACCTAAGAGATGCCAAGGCCTCACTG GAGACTCAGCTTCAAACCAAGATGAAGGAACTAGCTCAGGCAGCTGAGGCCATGAAACCCAACGGTGACA TGGGTAGTGATGAACCTAAGGAAGATGTCGTCTTGAAGAAGGAGCATGAAAACATCATGAATGAGAAAGA AAAGGCCTTGGCTTCGCTACAGGGTGAAATCTCATCCAGAGACGAGGAATTGGAGACACTCAAGCAACAA TTAGAGCAGCAGAAACAACGAAATAATAAACTTCAGGAGAAAAATTGGAAGGCCATGGAAGCCCTCACGG CGGCCGAAAAAACAAGCCAGGACAAAGTGGCCCAGGCGTTGGAGAAAGAGAAGAGTCTTCAAGAAGTTGC TCTTTGGAGCCTCGAGGAGGAGCTGGATGCTAGTTTATACAAGGAGAAGGAATCATCCAAGGGTTTGCTG ATGAGGATATTCCCAGACATTAACGTGGATTCTAGTCTTGGCTATGAAGACTGGCTGTCCACATTTGAGA AGAATGCCTTGAATTATCTTGCCGTACAAAAAGCTTCCTCAGGACTAGAGGTCGCTGAGTTGTCTTCCAC CATGTCCAGTTTGGAAGAAGAAAAGAAACAGTTAGCCAACCAATGTCAACATTACAAGTCTGTGCTCAGT GATACGGAAGGAATCTTAAATAAACTGCAAAGCAGCGTAGAATCTGAGGAGAAGAAATGGCAGGATAAGA TGTCAATAAAGGACACAGCCTTGGCACAGGCTAAAAAAGAGATGGCATCACTACAGGACCAAACAAAGCA GTTAGACCAACTCAAACAGGCATCTGAGGACAATAAGAGATTGACCAATGAGCTAGGAGCAGCTCGGACC AGCCTGAGTCAGATGGAGAAGGAACGTTCGGCCTCAGCAGCTGAGTATGAGTCTACTTGCCGTGAGTTGA AGGATGTCCAGAATCAACTCCGACAATTGATGGAGGAATTGAATACAGCCAATCAGAGGGCAGAGAATAG CGTAGATGTTGCAGAAATGCAGAAGGTGAAAGCCACCTTAGCCGCTGAACAAGAAAAGAGTCAGAAACTA TCGGCTGATCTCGAGGAGGCTAACCGCACCAAGGACCAACTCCGCAAAGCTTCCACTTCCAGCCAGGACA TCTTACAGCAAGAACTGCAGACACAACGTTCCTCCTCCCAACAACTCAAGACAGAACTAGCCAGTACCAA GCAGGATCTAGAATCAGCCTCCCAGAAGCTAGCCCAGTCTTCAGCCCAGCTCCAGACCTCCCAGCAGGGA CTAGTTCAGTCTCGGTCTGAGATGGAAGAGCTCAAGCGAAGCAACTCCAGGCTTGAGGAAAACGCAGAAG CTGCTGCTAAGGCAAAGCAAGAGACTGAGCAGAGCCTGGCTGCTCTCAAAAACGACCTGGTGGCCGCAAT GAGAGGGAAACAGGAAACTGAGCAGAACCTTGCATCTCTGAGAGAGGAGCTGGATGCTGCCACAAAGAAG AAAGAAGAAAATGAACAGAGTCTTGCATCTCTGAGAGAGGAGCTGGATGCTACCACAAAGAAGAAAGAAG AAAATGAACAGAGTCTTGCATCTCTGAGAGAGGAGCTGGATGCTGCCACAAAGAAGAAAGAAGAAAATGA ACAGAGCCTTGCATCTCTGAGAGAGGAGCTGGATGCTGCCACAAAGAAGAAAGAAGAAAATGAACAGAGT CTTGCATCTCTGAGAGAGGAGCTGGATGCTGCCACAAAGAAGAAAGAAGAAACTGAAGAGAGTCTTGCTA CTCTGAGAGAGGAACTAGAGGCATCCAAGATGGCCCCACAGGAAGCCTCAGAGGCTTCCAAGAGACTCCA AGAGAGTGAAGAATCCACCAAGACTCTCCAGAAAGAGATTAACACCTTAAAAGAAAGCCTCCAGAAGGAG AAAGGATTAACCAAGGACCTAGGCACAGCAGCAGCCAAACTGCAGGCTATGCTCAAGAAGACACAGACTG TATTGGCTGCAGAGAAACAGACCGTTGCTGAACTCAAAGCTAAAGCTGGCATAACACCGGAGCAGGCAGA GATAAATAGCTCGCTGACCGACAGTCAAGTTGAACTTCAACTCTTAGATGCTGCTGATGATGAGGAGGGT GCCAGTGCCAAACCTGCTGTTAAACCCGCAGACCCAACCGATGGTTCATCAGTGTAGCATCAGGCAACAA CGTGACATCATCACAAGGCCTTCCATTAAAATGTAACCAAAAAAATAATAATATCCCTGCATGCGTTGCA GATGCTCAGAGGGCGTTCTTTGTTATTGTAATCTTGTAACAATGAATGCAGGAATTATTCATTCATGCGT ATGGAACAATACAAAACCACGGCCCTCTAACTCCACCTCAACGCATCAGCTCCATTGTTGTACATGTATT TTAATTATTTTGTTGGGCTAGTCAAAGTAGATAGTTGTGTAGCTTACAAATACGTGCATGGTAAGATGGT GTCCCATGTTTACATCTAAAGCGCCCTCTAGTGATATGGAGACAGGTCAGGCAGACAACTTAAATAAGCC AATTGAGATTTGTTGTCTAACAGTCAAATTATTACACAAAACTTAAATCTTCTAAGTGCTTAAATTACCT GTAAATATTTAAAATACAAATACTGCTCAATTTTAGCTAACAATTCAATTAATCCGCCCAATAGTTTTAA CAACTGTAGTTCTTTCGTAGAATTCCATTCCAACATCGAATGAGGGCGCTGTTGATGTAGTAAAAAAAAA AAAAAGTAGGTCGGGGGTGGGCATACAGAGTTTTATTTGTAAAGATGTAAAGCAAGCTGCATTAAACTTA ATCCTAAGAGATCTCAAGCCAGAGATGTGATATTTAAAATTGGGCAAAACAAATAAATTTCTCCTGTCGA CTATTGATAGTTAATTGTATTTTTCCTTGTCATGTAAACATTTGATTGATTTTTGATTTACTGGAACAGA CAAATGAAATGAAAGTTCATCGTGTCGGTATGAAGTGAAAGGCTTAGATTGTTTGCCAGAAAATGGCTGT GGGTTATTTGACTTTTTTTTGAGGACAGAATAAAGTGGTAAGGCATTTGATTCAAAAAAGTATAAATAAT AAATTGCAGCATCAATTGTAGAAAAATTATTTAGTCCAATGTGTGTGCAAGGTTTATTTACCGTGGTAAA TTATGCAATTGGATTTTATTTCATAGCTATAGTGCCTCTCTGCCTATTCCATTATACACAGATTCACCTT TTTTTCTTTTGCTTCAAAGTAAATACTTGACATTGCATTAAGAATGACATTGCTGACCCCAATTTAGATT CTGACATGTCATTGATTGCTGCATGTATAAGCATACTTGTATACAGGTGAATACATACAGATGATTGCAT TATCCAGGGTGTACTTCTTATGTAATTTCCAAAGACAGGAATCAGTGAAGCACCTATATTTAGGACGAGG AAGATATTCTGGATAATCTGATATTTTTAGTAGTCCGTTGAGATTGATAATTAAAAGAAATGGCCAATGT TCACCAACTACTCATTTTCAACAGATCGACAAATCTGAAATATTTCAAAACTTGAGAAGTTGTATCCTCT CGTTCTCTGAAGCTGATCAACATCTTTTTGGTTTTCCTTTTTTTTTCCTAGGCTGAGTACTTAATACTTT GAGTTGTTTTTTCCTTGAATGGGTACCTGTCAAACTTCAATTCTTGTGGTTTATATGTACGTGTCTCGTT CAAGTAAAGCTTAACTAAATTGCTCCAACATGCGTAGGGAGTTGCAGTATTTGTTATTGTAATATCAGCA CTGCAATGTAAGCTCAATACCAGCTCTGAATTTGACATCAATGATGTTTGTATAAATGCTCATTTATTAA TCAACATTCCAGTCTAACGAAAAATGGATCGACTTATTAATCAAATGTTTCCAATCTGTTGTTGCTCAGT GGATCTAAAACATTAACAAGATTAGGTTGCGGGCTTATAATTTAAGGAATTGTTACAATTTTAGTCCCCC AAAATTCCCTTTTTGGGGGGGGGGGATTTTGTTAATTTACTTTTTTAACTGCATTTAGTAATCAAAGTGG TTAACTATTTTTCTCACCAAAACAAGAAAAGAAATATTACAGAATTTGCCTTTTGTGTTCATTTAGTTAC ATGTAAGTCAGTAGTTTTTCCCATCTTCTTTATGTCTGTTTGCTTTCTTTTCCTTCTGCATATATGCTTA CATAATATTAAAATAATATGTTTAAGCTGATTAACCTGGGTCCAGAATAATATAAAAGGGGGATGTTTTG TCATTATTGTAATCAGTTATAAATTTGAGTAATCATTTATAAAAAACAGGGTAATGGCATACAAAAGTGG TGGTGTTATTTCTTTATTCTTATTTCTGTGATTAACTGACATTTAATAATATGATGTGTAATCTGCAATG TATTTACAGATAAATACATACAGTGGAATTCAGGTTTATGCAGGAATTTACAACGTAAGATCTACTAACT TGCTTTGAATGGTGTCCAGCTGAGATCATCTGTGTTAAATCTAGCAGTTATGTGGGCATAAAACGTCTTG ACAGTATTGAATGTCAAACTTTATTGCCAGATGTAGGAAAATGAACACATTTGAAGTACTGACGCTGGAT TCTTAACTTGGTTTTTGTGAAACGATTCTGGGTTTTTTCTCCATTTGTCACATGGAAATTTATCTTGTAA CATTGCTATCAATTTTGTGCTCTGCTGCTGTGAAAAAGGAATGGGGGAGATTCGTTTTTGCTAATGCATA TTGGTTCAGAAACGCAACATTTATGTACTGTGTGCCCGATATCTCGACTACCCTTGTATGTCATCAGCGG AGACATTGGAAGTAAAGTAAAACACAGGGCATTCGGTCCTCAAGAAATTCAATATGTCAAAACTGATTTT GGGCGATACCACCATGTACCATAACAAGTTTTTGTGATGTATTGTCAAAAGGTTTGTATTTTTCCATTGG TCCATGTCCACTAGCCTTAGATTATCCCGCGAAACAAATTGACTGCATGTACATGTACCAATGGTTTCCT TAAAGCAACTCGGCAAAGTTTAAAGCCTACATTTAAAGACCAAGTGAATAATGATAAAATAAATTTAAAA ATTAAAGACGTTTGTTCTTTGGTGGTTGCAGTGACAAGAGGTAAGGAACATGATGTTTGAGACCAACTAC ATACCGTAATTTATGTTCTCAGTATCGTCAATTCCCTATTCACATGTCGTTGGATGTTCATTCTAACAAC TGTCAATTATCGGCATATTATGTAATGGTGAATTAAAGTTGTCACGACCAACTGATAAGACGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds