Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038216612.1 PREDICTED: Patiria miniata ribosome-binding protein 1-like (LOC119741028), transcript variant X13, mRNA CTGACCAATCACAGTACGTATTTCCCGCTCATGCATATCGTATGTAGGCGTGTAATTTTCCTTTAGGTTG CCGTCGTTGGAATTTGGATTGTGAAAAGATCGTCAAAAACACTTAAGTCTCTGGTTTGTGAGATTAAGTG GTGAAGTCCAGATCAACCATGATTGCTGTGGATTTGTATGAGCCCCAGGTCTTAGCCCTGGTGGTGTTTG CTAGTTTCATCGGCTTGTCTGCCTTAGTGTATATCATCTCCATCTTCACCATGAAGGAGAAGACATATGA GGAGGCCATTGCAGAGCAGCGAGCTCGCCTTGACAAGGAGCAGCAGCAACATCGAGATCAGCGGCAGAAA CGTCGTCAAGCCTTTCCTCGTAAGAAGAAAGATAAAGTGAATGACATTGACCAACCATCACCTCCCCCAT CACCTCCATCACCACCCGTGGAGGAGGAAATCAAGCCGATAGTTGAGCAACCAATCGCTGCTGCTCCCCC TCCTGCTCCTCAACCTAAGACCAAATCTCCTAAGCAAGGGAAACAACCCAAAGTACCACAGCAGCAGCAG CAGCAAGAGCAACAACAGCAGCAGCAACAAAAGCAGCAACCGCCCAAGGCGAAAGAAGCTGCTAAAGAAA CCTCAGCTCCTTCCAAGGAAGCACCTTCCAAGAAGACCCCCAAAGAGGCTCCTGTGAAAGAAGCACCCAT CCAGAAGGCTGCGTCAGCAACTACCAAATCTGCTCCTCCTCCAGCCAAGACCCAGACCTCTCCCAAACCA ACCCAGAAGTCTAGCCAGAAGCCCCAGAAACAGAAGCCAGTTGAGGAGAAACTGCAGAAGAAAGAAGCCC CAATAGTGGCCCAGAAGGCTCCAGAGGCCCAAGCTGCACCCCAACAACCCAAGAAGGAGGCTGGTGCTAC CCAGAGTTCCCCAGTGAAGAGCAAGAAAGGGGCCAAGGCTGGGGCACCATCGGGGGAGAAAGCAGCAGGA CCAGCAGGGGATACAGCTGTGGACACTGGAGCCCTGAAGGCCAAGAATCTTAGCGCCATGCTCAAGACAG CAACTCTGTCCAATAAGGAAGTTCAGCAACTTGTGGAAGTGTTGCTCAACAAGAATGGTGGATCCGCTGC AACATCGGAAAACTGGGTCAAGGCCAACCAACGTGATCCAGTCCAAGCCATGAAAAAACAACTGCAGGAG AAGGAACAAGCCTTGCACAATGAGATGCTGCTAGCCCAGTCCTCATCTCAGAAGGTGAAGGAACTACGCG CTGAACTGACCCAAGAAAAAAGCCGAAGGATCCAAGTAGAGTCTCGCTACAAAGAGACGGTGCATAACCA TAGCCGTGAATGTGATGCACTCAGAGCTAGAATGCAACAGAACCATGATGCTCATACCCGTGACACCCAG AATCTTCAGGCTCACATCAAGCAAGTAGAAGCCAGGAATGATAACACAGGGGTAGAGGCATTGAATCAAC TCCGTGATGAGAACACTCAACTCAAGGCAGAAGCAGGACGAAATGCACAACACTTCCAGAATGAAATCCA GAAGATAAAGAACCAAATGTCCGCCAATGAGGGTCGCGTCAGACAGGGTGATGATCAACGACGTAGCCTG GAATCCAAACTCACTCAGTATGAACAGCGGATCAAGGTGTATGAAGCAGGCCAGGCTGGACAGCGTGAGA ATGAAACAGCTCTCTCCAAACGTCTTAGCGAGGTCTCTGAGGAGCTACGTAAGGCAGAAGCTCGTCTCCA GACATCATCCAGAGAGGGAGAGAAGACGTTGGAACGTCTGCAAGCTTTGATGAAGGAGAACGATACTGTC AAGAAACAACTGCAGGAGGTGTATCGTCTGGATAGTGAGAAAAGTACACAGATGTCAGCTATGGAAACCA GACTCAGGGATCATGAGAAGCAAAAGATGAACCTTGAGGGCGCTGTTAATGATTCCAAGGCCAAGTTGTC TGAGCAGGAGAGAGCATGCACCCAGAAGGATAAGGAAATGACGAACCTAAGAGATGCCAAGGCCTCACTG GAGACTCAGCTTCAAACCAAGATGAAGGAACTAGCTCAGGCAGCTGAGGCCATGAAACCCAACGGTGACA TGGGTAGTGATGAACCTAAGGAAGATGTCGTCTTGAAGAAGGAGCATGAAAACATCATGAATGAGAAAGA AAAGGCCTTGGCTTCGCTACAGGGTGAAATCTCATCCAGAGACGAGGAATTGGAGACACTCAAGCAACAA TTAGAGCAGCAGAAACAACGAAATAATAAACTTCAGGAGAAAAATTGGAAGGCCATGGAAGCCCTCACGG CGGCCGAAAAAACAAGCCAGGACAAAGTGGCCCAGGCGTTGGAGAAAGAGAAGAGTCTTCAAGAAGTTGC TCTTTGGAGCCTCGAGGAGGAGCTGGATGCTAGTTTATACAAGGAGAAGGAATCATCCAAGGGTTTGCTG ATGAGGATATTCCCAGACATTAACGTGGATTCTAGTCTTGGCTATGAAGACTGGCTGTCCACATTTGAGA AGAATGCCTTGAATTATCTTGCCGTACAAAAAGCTTCCTCAGGACTAGAGGTCGCTGAGTTGTCTTCCAC CATGTCCAGTTTGGAAGAAGAAAAGAAACAGTTAGCCAACCAATGTCAACATTACAAGTCTGTGCTCAGT GATACGGAAGGAATCTTAAATAAACTGCAAAGCAGCGTAGAATCTGAGGAGAAGAAATGGCAGGATAAGA TGTCAATAAAGGACACAGCCTTGGCACAGGCTAAAAAAGAGATGGCATCACTACAGGACCAAACAAAGCA GTTAGACCAACTCAAACAGGCATCTGAGGACAATAAGAGATTGACCAATGAGCTAGGAGCAGCTCGGACC AGCCTGAGTCAGATGGAGAAGGAACGTTCGGCCTCAGCAGCTGAGTATGAGTCTACTTGCCGTGAGTTGA AGGATGTCCAGAATCAACTCCGACAATTGATGGAGGAATTGAATACAGCCAATCAGAGGGCAGAGAATAG CGTAGATGTTGCAGAAATGCAGAAGGTGAAAGCCACCTTAGCCGCTGAACAAGAAAAGAGTCAGAAACTA TCGGCTGATCTCGAGGAGGCTAACCGCACCAAGGACCAACTCCGCAAAGCTTCCACTTCCAGCCAGGACA TCTTACAGCAAGAACTGCAGACACAACGTTCCTCCTCCCAACAACTCAAGACAGAACTAGCCAGTACCAA GCAGGATCTAGAATCAGCCTCCCAGAAGCTAGCCCAGTCTTCAGCCCAGCTCCAGACCTCCCAGCAGGGA CTAGTTCAGTCTCGGTCTGAGATGGAAGAGCTCAAGCGAAGCAACTCCAGGCTTGAGGAAAACGCAGAAG CTGCTGCTAAGGCAAAGCAAGAGACTGAGCAGAGCCTGGCTGCTCTCAAAAACGACCTGGTGGCCGCAAT GAGAGGGAAACAGGAAACTGAGCAGAACCTTGCATCTCTGAGAGAGGAGCTGGATGCTGCCACAAAGAAG AAAGAAGAAAATGAACAGAGTCTTGCATCTCTGAGAGAGGAGCTGGATGCTACCACAAAGAAGAAAGAAG AAAATGAACAGAGTCTTGCATCTCTGAGAGAGGAGCTGGATGCTGCCACAAAGAAGAAAGAAGAAAATGA ACAGAGCCTTGCATCTCTGAGAGAGGAGCTGGATGCTGCCACAAAGAAGAAAGAAGAAAATGAACAGAGT CTTGCATCTCTGAGAGAGGAGCTGGATGCTGCCACAAAGAAGAAAGAAGAAAATGAACAGAGTCTTGCGT CTCTGAGAGAGGAGCGGGATGATGCCACAAAGAAGAAAGAAGAAACTGAAGAGAGTCTTGCTACTCTGAG AGAGGAACTAGAGGCATCCAAGATGGCCCCACAGGAAGCCTCAGAGGCTTCCAAGAGACTCCAAGAGAGT GAAGAATCCACCAAGACTCTCCAGAAACAGGCAGAGATAAATAGCTCGCTGACCGACAGTCAAGTTGAAC TTCAACTCTTAGATGCTGCTGATGATGAGGAGGGTGCCAGTGCCAAACCTGCTGTTAAACCCGCAGACCC AACCGATGGTTCATCAGTGTAGCATCAGGCAACAACGTGACATCATCACAAGGCCTTCCATTAAAATGTA ACCAAAAAAATAATAATATCCCTGCATGCGTTGCAGATGCTCAGAGGGCGTTCTTTGTTATTGTAATCTT GTAACAATGAATGCAGGAATTATTCATTCATGCGTATGGAACAATACAAAACCACGGCCCTCTAACTCCA CCTCAACGCATCAGCTCCATTGTTGTACATGTATTTTAATTATTTTGTTGGGCTAGTCAAAGTAGATAGT TGTGTAGCTTACAAATACGTGCATGGTAAGATGGTGTCCCATGTTTACATCTAAAGCGCCCTCTAGTGAT ATGGAGACAGGTCAGGCAGACAACTTAAATAAGCCAATTGAGATTTGTTGTCTAACAGTCAAATTATTAC ACAAAACTTAAATCTTCTAAGTGCTTAAATTACCTGTAAATATTTAAAATACAAATACTGCTCAATTTTA GCTAACAATTCAATTAATCCGCCCAATAGTTTTAACAACTGTAGTTCTTTCGTAGAATTCCATTCCAACA TCGAATGAGGGCGCTGTTGATGTAGTAAAAAAAAAAAAAAGTAGGTCGGGGGTGGGCATACAGAGTTTTA TTTGTAAAGATGTAAAGCAAGCTGCATTAAACTTAATCCTAAGAGATCTCAAGCCAGAGATGTGATATTT AAAATTGGGCAAAACAAATAAATTTCTCCTGTCGACTATTGATAGTTAATTGTATTTTTCCTTGTCATGT AAACATTTGATTGATTTTTGATTTACTGGAACAGACAAATGAAATGAAAGTTCATCGTGTCGGTATGAAG TGAAAGGCTTAGATTGTTTGCCAGAAAATGGCTGTGGGTTATTTGACTTTTTTTTGAGGACAGAATAAAG TGGTAAGGCATTTGATTCAAAAAAGTATAAATAATAAATTGCAGCATCAATTGTAGAAAAATTATTTAGT CCAATGTGTGTGCAAGGTTTATTTACCGTGGTAAATTATGCAATTGGATTTTATTTCATAGCTATAGTGC CTCTCTGCCTATTCCATTATACACAGATTCACCTTTTTTTCTTTTGCTTCAAAGTAAATACTTGACATTG CATTAAGAATGACATTGCTGACCCCAATTTAGATTCTGACATGTCATTGATTGCTGCATGTATAAGCATA CTTGTATACAGGTGAATACATACAGATGATTGCATTATCCAGGGTGTACTTCTTATGTAATTTCCAAAGA CAGGAATCAGTGAAGCACCTATATTTAGGACGAGGAAGATATTCTGGATAATCTGATATTTTTAGTAGTC CGTTGAGATTGATAATTAAAAGAAATGGCCAATGTTCACCAACTACTCATTTTCAACAGATCGACAAATC TGAAATATTTCAAAACTTGAGAAGTTGTATCCTCTCGTTCTCTGAAGCTGATCAACATCTTTTTGGTTTT CCTTTTTTTTTCCTAGGCTGAGTACTTAATACTTTGAGTTGTTTTTTCCTTGAATGGGTACCTGTCAAAC TTCAATTCTTGTGGTTTATATGTACGTGTCTCGTTCAAGTAAAGCTTAACTAAATTGCTCCAACATGCGT AGGGAGTTGCAGTATTTGTTATTGTAATATCAGCACTGCAATGTAAGCTCAATACCAGCTCTGAATTTGA CATCAATGATGTTTGTATAAATGCTCATTTATTAATCAACATTCCAGTCTAACGAAAAATGGATCGACTT ATTAATCAAATGTTTCCAATCTGTTGTTGCTCAGTGGATCTAAAACATTAACAAGATTAGGTTGCGGGCT TATAATTTAAGGAATTGTTACAATTTTAGTCCCCCAAAATTCCCTTTTTGGGGGGGGGGGATTTTGTTAA TTTACTTTTTTAACTGCATTTAGTAATCAAAGTGGTTAACTATTTTTCTCACCAAAACAAGAAAAGAAAT ATTACAGAATTTGCCTTTTGTGTTCATTTAGTTACATGTAAGTCAGTAGTTTTTCCCATCTTCTTTATGT CTGTTTGCTTTCTTTTCCTTCTGCATATATGCTTACATAATATTAAAATAATATGTTTAAGCTGATTAAC CTGGGTCCAGAATAATATAAAAGGGGGATGTTTTGTCATTATTGTAATCAGTTATAAATTTGAGTAATCA TTTATAAAAAACAGGGTAATGGCATACAAAAGTGGTGGTGTTATTTCTTTATTCTTATTTCTGTGATTAA CTGACATTTAATAATATGATGTGTAATCTGCAATGTATTTACAGATAAATACATACAGTGGAATTCAGGT TTATGCAGGAATTTACAACGTAAGATCTACTAACTTGCTTTGAATGGTGTCCAGCTGAGATCATCTGTGT TAAATCTAGCAGTTATGTGGGCATAAAACGTCTTGACAGTATTGAATGTCAAACTTTATTGCCAGATGTA GGAAAATGAACACATTTGAAGTACTGACGCTGGATTCTTAACTTGGTTTTTGTGAAACGATTCTGGGTTT TTTCTCCATTTGTCACATGGAAATTTATCTTGTAACATTGCTATCAATTTTGTGCTCTGCTGCTGTGAAA AAGGAATGGGGGAGATTCGTTTTTGCTAATGCATATTGGTTCAGAAACGCAACATTTATGTACTGTGTGC CCGATATCTCGACTACCCTTGTATGTCATCAGCGGAGACATTGGAAGTAAAGTAAAACACAGGGCATTCG GTCCTCAAGAAATTCAATATGTCAAAACTGATTTTGGGCGATACCACCATGTACCATAACAAGTTTTTGT GATGTATTGTCAAAAGGTTTGTATTTTTCCATTGGTCCATGTCCACTAGCCTTAGATTATCCCGCGAAAC AAATTGACTGCATGTACATGTACCAATGGTTTCCTTAAAGCAACTCGGCAAAGTTTAAAGCCTACATTTA AAGACCAAGTGAATAATGATAAAATAAATTTAAAAATTAAAGACGTTTGTTCTTTGGTGGTTGCAGTGAC AAGAGGTAAGGAACATGATGTTTGAGACCAACTACATACCGTAATTTATGTTCTCAGTATCGTCAATTCC CTATTCACATGTCGTTGGATGTTCATTCTAACAACTGTCAATTATCGGCATATTATGTAATGGTGAATTA AAGTTGTCACGACCAACTGATAAGACGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds