Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038216418.1 PREDICTED: Patiria miniata alsin-like (LOC119740929), transcript variant X1, mRNA TACATGCAAACTTGAATGGCGCGCCGGCCGGGACAGCTGTTCGCTACACGGCCGAAAATCAGATTTTCTC TCATAATCTGCTGTAGAGAGCATTGGAAATCGCTCGGATTTTCAGGTTTAAAGGAAACTGGATTTCATAC CCTACCTCGACCTAGCTGTCGTGGGAGCTGGCATGTGTCAGTAGCGTTGAAATCGCTTAGATTTGTGTGA ACCAAAATATTCACAAATTGCACGTAGGCCTATGGACGGTGCATTTGCAGCCGACAACCAACCAGACAGC ATCGTGAACATAGACAGGCTAGGCGGAGCTGATGAGGGCCCTACATGTATGTGCGCTGATTGAGGTAGCG AATTTGTAGCGGTTTATTTTACAACCTTCAGTTCTAATTCTATGGGAATCATCACAATAGCTGCTTTGCA TCATGGAGGGAAATGTAGAGCCTGATGACACAGCCAGCAAACGGCAGAGCCTCCAATCAGTGGCTTACAC CTGGAAGGGGTTTCTCAGCAACACCTCCCCATATACCTACCCCAACCTGAGCGCCAAGAATGTGATCAAG GTCTCTCTGGGAAGTAGGCACTCTGCCTTCCTGACTGATCAGCATGCCGTCTACTGCTACGGTTCTGGGG AGCTCGGCCAACTGGGCCACAAGAAGTTCTCCGATGTCACCAAGCAGCCTGTACTTGTCCAAGATTTGAA AGGGGAGAACGTCATCGATGTGGTGTGTGGGAGCAACCACACGGCAGTTCTGTGTTCAGATGGCATTGTC TTCTGCTGGGGAGACTCCAGCAGTGGCCAGTGTGGGATTGGACAGATAGAGAAGACCAACTCGCCCCAGC AGGTGCAGATCAGCGACACAGATTCCGATCCAATCATCACACAGATCTCATGTGGAGACTCACACACCTT GGCCTTATCCAGCAGTGCCGAGATATGGGCCTGGGGAACAGGTCCGCAGCTGGGACTTGGGACGGGATCA ACGCCTGTCCCGACCCCACGAAAGGTGCAAGGCCTGGTGGGGAGAAAGGTGCTGCAGATATCGTGTGGTT CAAACCACAGCCTGGCTGTGGTGCAGAAAGCACGCACCTCCAAGCTGAGCGGCGGCAGGCAGAGAGACAT GGATGAGGAAAGTTCTGGAACCAGTAGTCTCCAGATGACGGATGAAATTTACTCCCTCCACGAAGAAGGG GACATTGTCATCATAACGGACACGAGAACCGCAAGCAGCTCTGTCGAAGAGATTCCCTCAATGAGAAGCT TTTCACCGGACAGTATTGATGTTGCAGCAAGACGACCAGCTCAAAAGGATGCACCTGCCAAAAGCGATTC GGAGGATTCCAACAACAGCCAAGGCACGTACACTGTGGATGAAGACAAGGAAAAAGAAGCAGAAGCTGGA CAAAGTGAGTCTGTGGTCAATGGGGAGGTTTTCCATGATCAGCCAGATAGTGTCAGCACCCCGACTTCAA CAATTCGGCCAGAACGAAGACTGACATTCACTGAATCCTTCGACAGTGCTTCTGCCAAGAAGTACCTGGC GCAGCAGCTGAAGCCCCTGCAGCTCGCAGAGCCACCCAAGCCAGTCAAGACATCCCCAAAAGACCGCATT CTTGCCAGCCTCCCACAAGCCGTGTCCTCGAAAATCAGCAAGCTGATGAGCCCCCTCAGCCTGAGGTCGA AATTTAGTCTGACGGAGTGCGGCGAGCAAGAGGACACAGAGGTTGAGGAGCTGATGATGAGCGGGGTTTC CCAGCATGAACTTGGCAAAAGCTCTGGTGTCAGGTTCTCGCTAGAGGGTCCTCTGGATGACTCAACATTA CAGACTGAAGTGTGGAGCTGGGGCAAGGGGGCAAATGGGCAGCTTGGCCAGGGAGACCCTCTTGACAAAG CACAACCCCTGGTCATCAAGCAGTTGACTGGTAAGGGTGTGGTCCGCGTGATAGCTGGACCGAACCATTC CATGGCCATAGCAAGCAGCGGTCAGGCATTCTCCTGGGGTTGCAACTCTGACGGTCAGCTGGGACACAAT GGTCAGCTGGTTCCAAAAAGGATCAAGATGCCTAATAATGCTTTAGTATGGGATGCTGCTGCTGGCAGTA CCCACACTCTCCTGTTAGCAGATGGGAACAGCTTCCAGCCCGACATATACTATCTGGGAAAACAACCAAG TCTCCAAGAATTAAAGAACGAGGGGCGTACTGGCACACCGGAGAACAGCCCCCTGAAGGAGAGTAAAGAA GCCAGTAAGAAGCGGCCGATGTCTAGCATTGCCAAGGGACCAACAGTCAAATATGCAGCAAGAGCCAAAC AGCCAGAAAAGCTTCCCTTCATTAGAAAGTGTGGTTGGGCCCAGTTTGTAGCAGCTGCGTCTGACCTGTG TGCATGCATCACAGACAAGAATGCCTCCGGCTTTACGGCCATTCTCCATGAGCTGGCTGCCTCTGAGAGA CTCTTGCACTACCAGCTCACCACAACGCGGTCCACTATCATCAAGGCCCTCAGCAGTCCAGACATGAACA AAGTACTAGAAGGAACCATCTACCAGCAGCCATTCCGACAAATCGTTGACCTCTTTTCGTTACTCGGCAC GACCGTGGCCCACAATTCCATCGGCCTGATGGCAGCCGTACAACGGAGCCGTGACCTTGTTGAACTGGCC ATGTTGAAGAGTGGAGCCGAGTACCGGGCCGTCTTTGAACAGTACGCTGTCTATGTCTGCAACTTTGTAA CTGTCGGCGGATTCACTCACATGGGAAAAATTGGAAGTGATGCGCTCTCCAAGCACGAGGCAGTCTTCAC GGAGCTCTTGAACGAGGAGAAACCAGCAAGTTACGGCACTCCGCTGAGGAATCTGATGAAACTCCCCCTG GATAGGGTCAAGTGCTACGCCTACCTGCTGGGCAAGCTCAAGGATTACTATGCCCAGGGAAGCACAGAGT TCAATCTCCTAAAGGAAAGCAGTGAATCGTGGGAGGCATTGCAGCGCAGCATTGACGAGAAGAAAGCCCA TGCTGAAGAGACCAGGGCGTTCTGGGAATCCTGCCCATCCAAACTGGCTGAAGCCATCAAGCAGCCTGAC CGTCGCCTCCTGAGAGATTCCCGCACCAAGTCCCTGACGCTCCTGAACGCTGGTAGACTGTCTCAGCACT GGTTCCTTCTGTTTGCCGATATCTTCGTCCATGCACAGACTGAGGGCAAGCCTGGAAACATAGAAAAGTT TACGACTCACCAGGCCTTCCCGTTGGCTCTCATCTGGGCTGAACCAGGCCAGCAGGCAGACCAGAACACT ATCCAGCTGACGATGCCAGAAACCTCCCTCACCCTCCAAGCCCCGACGCCGGCAGAGAAGGCCGAGTGGC TGTGGTCTGTCAACCAGGCCATCGACGCCGTTCTGACCAATCAGAAGCCAGGGTGTGTCTCTCCGGCCGC CGTGCCCGCAGGCCAGAAGATCCCACCCAAACTGACCAGGCAGGGACGTTACTTGTTCCTGGGACAACCC AAGTTCAAGGATGCGGTGTATGAGGGGACGTGGCATTTGGGAAAACCCCATGGAAAAGGCACTTTACAGT GGCCAGATGGAAGGAAGTACTCTGGTCAGTTTGTGCAAGGGCAACAGCATGGATATGGTGTGTATACAAC TCCCAGTACTGAGAAGGGCATAAAGGCACAGGTGTATGAGGGCGAATGGCAGGAGAGTTGTATGAGTGGC TATGGCACCCTAAGGTATTCCAACGGAGATATTTACCAGGGCGATTTCAACGACGGCATGCGTCACGGGC ACGGCATCATCCACAGCAGCACGGGCAACCTGTACATCGGGGAGTGGCACAACGACCGTCGCCACGGCTA CGGAATCATGGAGGAGAGGCTGCGGGGAGAGAAGTACATGGGCAAGTGGGAGAACGACTGTCGGCACGGC AACGGGATGGTCATCACGATGGCCGGCTTGTACTACGAGGGCCTCTTCACGCAGAACAAACTGATGGGTG TCGGCATCCTTCTTACTGAGGATGGCACTGTGTACGAAGGAGAGCTGACTACTGGTCCTACGCTTAGCGG CAAGGGACTTTTGATGTTACCCTCCGGAGACTTCTTCGATGGTACTTTCAGCGGCCTATGGGGCGATGGC GTCAAGGTCAACGGAACGTTCAGTAAAGCTGCCGACTCGACTCCCAACAGCACTAAACAAGCCAGTCCAA TAGGTAAATTCACCGTAGCGGCAGATGACAAATGGGAAGACGTCTACAACCAGGTTCGCTCGGTGCTGGG CTTGCTGGAAAACAAGCGGCCGGACTCCCAGAAGGCCTGGGCAGCTGTTGCCGTGGCGATATCATCACGG ACACGGCAAGAGAAAGACAGGTTGCATAAGGATGAACGTAGCAAGGTGGTAGAGGAACTACAGAAGATAC CAAGCAGCGGTCATAGTAAAGGGAAGATCACTGAAGAGGACTACAAGGCAATACAGGAATACTTGGCTAA GGCCTTTGATACATCTCTTCATCCCCTGGGTAGACTCCTTGAGAACCTGTGTGTAGCCTACCGTGAGACC TACATAGGCCTGGGCGCTCATCGTTGGCTACTGCCTTACGCTGTGGAAGAGATCAAATCATACGTCAAGA GGATATACCAGCTAGTCCGAGTACTGTTCAACGACCTCCCAAATGAGCATCCGAACAAACCAGAAACTCC AGTTCATGATCACCACACCTCAGACTTCCACTACTACTATGACTACAGCGACAGCCATCCGCCCCCAGCA GTCGAGGCAAAGATAGCCAAGTCTGCAAGCAAGAACAGGCAGCTGTCTACGGATGATATCACCTGTCATA TTACGAGTGACGGTCTCCTCTACCCGATAGTACTACCGCGCTTGTACCCGGCCTTGTTTACTCTCTATGC ATTGAAGAATGAGGAGGAAGATCAACAGTACCAAGACAGATTGAGAAGACTGAACGAGAGGCCTGATATG GCCCTGCTGGCGTACCTCAAAGTGGACCAGAAATTCTGGCTCTTGGAAGAAGTCGTGAAGGACTCTTTGA AGAGAATCTCTGAGATTCGCGATGTCTCCTACGTCGCGGCGGTGGAGTGCCTGCAGAACATGAGCACGAC GTTCAGCCCGCGCCAGAAGCTCCTCATCATCCACACGGCCTGGGAGGCCATCAAGGAAGCTATTGAGGTC CACAGCACAGAGAGTGTCACGCTCGGTATGGATGAGCTCTTCCCGATCTTTCAGTACGTGGTGATTCGTG CAAGGATACCGCACTTGGGCTCGGAGATTCAGCTCATCAATGACCTGATGGAGGTCAAGTCTGACCCGGG TCAGTGGGGTCACATGTTCACGACCCTGGAGGCCTGCTACCTGCTGACAAGATACGATAAACTACCCGAG GACTCCCTGCATTAAAAACGTGCGCTGCGTGCCACCTACAAGCTTCAATTTCTGTAAATTCAAATTTTAC TAAACATGCAAAGATATGTGTACTTAGGGGTTAGATTGGTTTTGTATTATATTAGGGTACAAGAAAATTG TGGTAAATTTTTTTCTGCTGCACTGATGCAAGAGAGGAAAATCTAACGAAATGTAATCATCTTTGAATTT CTGTAATAAAAAAACATTCTTTGTTATTCGTTTATCAGTTCTTCAAGTCCAAGCCATGTAGTTCTAATCA ATGTGTTATGAAATGTATTCTTACCCGGCCCATAATTAACGCAATGTACATGGAGATATGAAATATTTGT GGCAAGATTTCACTGAGACACATTGCTGCAATACTGTGCCACAGTGGGGTGCTGTGGTCCAATGGTTACG GTGTTCGACTTGTGTGCCGTGGTACATGGGTTTGAATCCTGACCG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds