Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038214131.1 PREDICTED: Patiria miniata protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2-like (LOC119739269), mRNA ACCCAGTGCGGCGCCCTCTTCATACGTCATCTTGTTGGGCATCTCGTAGACGTACTTGGTGGGTACGGCG ATGGCCTCAGCAAACGTGCCGCTGCGTTGGAAGGCAACAACGCGATCACCGACCTGTGGATGTTGAGAAC TGAGTTGCAGATGTAGTGGGTGCGGCTGTGGTCGCCGAGATACTCATCTTGGAAGCAAGACAATGGACTT TTAATAACCCGTGCTTCTTCGTGGAATCTCCGAAGTTGCTGCACTGCAGATGATTGATAAGACATTCATA CCCTTGTGTCCGAAGCTTCCACACCAGTGAAATGGCTGTGTCAGACTACCTGGCTCTGATAGTCATGGCC ATAGCAGCCTGGAGCCAATACAGATGCTACTTTCTCCAAGAGGAACTCTCCCGTTGCTCGGAGAAAGAGG AGTTGGGTAATAAAGTGGTGTCGCAATCAGAAATTCAGGAACATTTAGATGATGGTGAAGAGGACCCTCA AATCGTGGACAGAAGATTGTTGGCAGGTGGATCATCCGTTTGGTGCTCAGGTTCTAACAACACAGACAGG ATGTGTCAGTTTCACAACCTGTGCTTCTCTCAGAAACATAAGGAGTTTGTCTTCTTAAGTGGTTCTAAGT CAATCGCTTTCGGGCTTCCTGAGAACCCCTTCGATCCTGCGCTGGTGGACTTGTCTTCAGTGCCCAACCA TAACACACAGTATTTTGGATTCAGTCATCTGCCAGTGGCGGCGTTGGAAGACACGAACACCGTGGCTGTT TTCAGAGGAAAGCACCTTCTCATGAATCGATTCAACCCGAGTAACATCATGCACGTGTTCCACGATGACC TCCTCCCGCTGTTTTACACCATGCTTCAGAGTGGACTGATGGCAAAGGGAGACTTCAAACCCACCGCTAG ACTAGTATTCCTGGATGGATATCCGGCCGGTGAATTCATGGACTTGTATGCCTCTCTGTTCAACTACCGG CCGATTCTTAGAGATGAAATCACGAGCGACTCTGACAGTGCTGACCAGGACAGTTTGGTGTGCTTCGAGG AGGCCTTTGTCGGGTTATCAAACGTGACAACTTGGTACCAGTATGGCTTTCAGGTTCCCCAGGGACCGGT TCCAAACACCCTCTTGACAGCCAGGGAGGTGAGGGTCTTTACTTCCTTTGTCCGTAACCAGATGGGTGCT AGGAGGTGCGAAGCATCAGATGATTACATTGTGCTGATCAAGAGAGAATCAACGAGACTGATTCTGAATG AGATGGATTTAGTTACCCTTGTTGCACAGGGCACCGGCCTGCGTGTCTTGACGGCAGGACTTGAAGACTA CCCCATCAAAGATCTGATAGAGTTGGTGTCTTGCTCCAAGGTTTTGATAGGAATGCACGGTTCCCTGTTG ATCCTCTCCATGTTCCTCCCAGTAGGCTCCATGCTGTTAGAGCTCTTCCCGTATGCCATCAACCCAGACT ATTACACCCCGTACAAGACGCTTGTTCAGCTCCCCGGTATGGGAGTTGCTTACAGGTCCTGGAGGAACTG GAGCCCGGATCGGTCTGTTGGGCATCCCGATGCACTACCAGCACACGGTGGGATACGACACCTAAGTCGG CAGGAGCAGAAACAGATTTTGACATCGCAAGAGGTTCCCCAGCACCTCTGCTGCTCGAACCCCGACTGGC TCTACAGAATCTACCAAGACACTGCCGTCGACATTCCATCTATTTTGAACCTGCTTTCAGAAGGTCTTCA AGAGTGCCAACAATCGAGAACCGAGATAGCACCTCACTTCCCTGTCTTTCCTAGCAAGGTGGGCGGCATA CATTGTGACCGAGTTAAAGGGCTTCGTGTATCATGGCAACGACCTTGGAATATCGAATACATGAATACAA ATGAGGTCAGGTATGAGCTTTGGACACAGGAGACAGACGGAGACGATTACAAGGCTTACATCTTACAACT CGAGGGGTATACATTCTCCGAGGGGTATGAAGACAGCAAATCCTACCGTGTCTGGGTAAGGTGTTTGGTG GGGAGCATCAAGGGGCCGTTTTCTAGTGTCGTTTGCTGACAGCTGAACATGTAAACCTTCAGTCTTTCGT CTTTAATATTCAGTGCAACTACACACATGTTCAGCTCCCACATGCAGTGAATATCTGTCCAAGGTGGAAT TTATATGATCAAGTTAAACATTTAAAACTGTGGCGATTGTAAGTTGCTCTGTGAGCTTCTTATAATGAAT AGCACAGTGTTCTCTCAAATATTTACCAAAGAAAGAAACCTCGCTTGCTGTATCAGAGCTTGTACAAAAG GACTGTTTGAACTGATTTTTTTCCCCAAATGTATACAGTTCCAAGGGGAGGGGGACGGTTGTGGCCATAT AAAACCAATTTAAACCACAGCAGCCCAGGGACCTCAGGAGCTTGGTCGGTCAAGCAAATAGAATGTAATG ACATCCCGGTTGCCTTCCAAGGGAATAACACCAAGGGAATAACACCAAGGGAATAACACCAAGAGTGCAC GTCCTAAGTTGGGTGGTCGAGCTCTGAAGGTTAACGACACTGGTGTTAGTCACCAATGAGCTACTTCTCT TATAATTTAAATCAATATTTGTCCCCCCCCCCCCGAATCCGATGCTTGTCTCTTTCCAACAGCTTTTTTT GCCCAGGCAGAAACTAAAATTATGTGAAGTGGATGATTTGTTCTGCCTGATTCCATTTATAACTGGAAGA CATCCTTTTACCTAGTGTTCAGTTAGGCCAAAAAAATAAAATAGTCGGTCTCTGGTCAGACCGAAGTTCC GGAATTGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds