Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038213659.1 PREDICTED: Patiria miniata TATA-binding protein-associated factor 172-like (LOC119738724), transcript variant X1, mRNA ATGTCCATCTGCAGATTGGATCGTCTGTTCCTTCTGTTGGACACCGGGTCCACCCCAGTCACCCGACGGG CGGCCGCCCAGCAGCTGGGGGAGGTGCAGAGGCTCCACCCACATGAGCTCCACAACCTTCTAGCTAAGAT TCACTTTTATTTGAGAAGTTCCACGTGGGAAACCAGAATAGCAGCTGGTCATGCCATAGAGGCTGTAGCT AAGCATGTACCTCACTGGGCACCCATCAAGAAGATCAAAGAAGAGGGTGCGTCGGGGACCGCAACACCAC GTATCGCCACACCTACCCACCAGCGGGAGGCTGACCAGCTGAGGTTTGACAAGTTTGACGTGGGTCGGGT CCTGAGGCACGGCTCCTCCCTGCTAGGCTCAGCAGGAACTGAGTATGAGGTGGAGGTTGAGGACCCAGGT TTGGACCCGAAGGAGAGACTCTCCAAGCAGAGACGACTGTTGCAGAAGCGTCTGGGCCTGGATGTGGGCG GAGTCCTGGGTATGGACTCGGAGGAGTTGTTTGATGATGAGGACCTGCTGGTGAAGAAGGAGACGCCGTC CGGAGCAGACAATAATACTCTCAAACTTCCCACCTCTGCTGCTGACATTGTCGCCCAGGAGATGGCACAG ATGGGTGCTGGCCTGAGCTCACGGGAGAAAAACCGAGCCAAGCGTAAGGCCAAACTACTCCTGAAACAAC GCTCCAAGGAAAACAGTGACGCAATGGGTTCAAGTATGGAGAGTGTTGGTGATGAGCCAGCTAATAAAAA GTCCAAGATTGTCAAGATAGCCAGCCAGTCCTCATTCTCAGACAAGCAACAGTCAGACCAACTGACAGAC AGCAATGTTTTTTATGAAGAGCCTGGTGAGTGGCCCTTTGCCTCATTCTGTGAGCAGCTGAGCACCGATC TCTTCCACCAGTCTTGGGAGGTGCGGCACGGAGCAGCTACCGGCATCAGGGAAGTCATCAAGGTGCACGG CCAGAGCGCTGGCAAGTCTGTGGACCAGCCTTGGGACCAGCAAGAGAGTTTGAATCAGATGTGGATGGAG GACATGGCACTGCGACTACTCTGTGTTCTGACATTGGACCGTTTCGGGGACTTTGTCTCAGATGAGGTTG TTGCCCCAGTAAGAGAAACCTGTGCCCAAGCCCTAGGGGTTGTATTACACCATATGACCACCGTTGGTGT GCAGGGTGTGTTAGGGGTCTTGCTTCAGCTACTGTCCCAGGACCAATGGGAGGTCAGGCACGGCGGCCTG CTGGGGATGAAATATCTGCTGGCTGTCAGGAAGGAGATGACAGATGAGTTACTGCCAGCAGTGCTACCCT CCATCGTACGTGGTCTGCAAGACGTAGATGATGATGTCAGGGCAGTAGCTGCAGCAGCGCTCAACCCAGT AGCTGGAGCTCTAGTTAGAGTGTGTCATGCCCAGGTCCCAACAATCCTCAGCACCCTCTGGGATACCCTC TTAGACCTCGATGACCTGACAGCATCCACTAACAGCATCATGACCCTGCTAGCCTCCTTGAACTCCTACC CAGCAGCCTTGGCATGCCTTAGCCAGACGACTACCAGTCTGGTACCTAGACTCTGGCCTTTCCTGAGGCA TAATATCACGTCGGTCAGGAGAGCAGTGTTGGAGACGCTCTGCACATTGCTACTTGCAGATAATCAACAG GTTCCTACGGATGTCTGGCTGCCTCCAATCCTGCAGGATGCCTTGAGACACATCTTCCAGCGTTGTATCT TGGAATCAAACCCTGACATACTGGCTCTCATTGAAAAGGTATGGGATGCATTGCTAGAGAAGTCCCCACT AGACACCCTAGTGGGTGCATCATGTCCTTACATCAGTGCATGGATGTGCCTGGCCATGCAGCCTTCCAGA GTCCCCATCGATATGCATATGATGATTGAGGCCAAGCACAAAGTCAAGGAAAGCAAAGGTCTTAACAAGA GCTGGAAGAGCCAACAGACCATCAAAGAGGATGACAGAGAGTACATTGGCGGGGATGCCGCGCTGGGTGC ATCGGTGACAGACAGGGAGGCAGTAGTCCTGCAGGCTAGGACAAGGACTGCCAGGTTACTTGGTCGCATT GCACCGTACATCACCAGCAGCAAACTGGCTGCCGAGCTTAACGCGTCGGAGTCCTTCGGTCAGATTCTCA TCTTCCACATCAAGAGCAAGTCAGCGATACAGAGGATGGTGATCGGTCTCATCATTGAAGAATGGGCACG GACTGGCAAGGAATTCCAGTGTCCAGAAGCAGTCAAGACCAAACTACTAGAGGTCTTATCCTGCACGATG TATTTTGACGAAGTGTCGACAGCTTTCATGAAAATGCAGTCAGAATGTAAGATGCTTGTAAGTGCATGGT GCGATGTAAGAAGAGAAGTTCAGCCCGGGCAGTTTCCTAGTGCTTTCACAGTAGAGCAGGCCAACGCCTT GTCAGAGTCCATCCAGGGTCAGCTATTCCAGGCAGGCCTTGGAGCTAGGATCACCCAGGACCTCCAACAG AAATGCAGACAGATACAGGGGAGCATTGAGGAGATCAACACAGAACAGCAGATACTGAGCACAAGGACCC ATGCCTGTGTGGCCTCAGCCGTGATTGCCTTGAAAACCCTGCCAGACAAACTGAACCCGATCATCAAGCC TCTCATGGACAGCATGAAGAAAGAACAGATAACAATCATGCAGAGCCATGCAGCCAACAGCCTGGCCAGC CTCCTGGAGCAGTGCAGTCACCGCACCCCTTGCCCCTCCCCGAAGATCCTCAAGAACCTCTGCAACAGTC TCTGCTGTGACCCCAACATCACCCCAAACGCCGCCCGGCCCTTGGGCTCCTTAGACCTGTCAGCCAGGCC GCCGTCATTCAGCAAAGGGTCTATAACAGGGTCTGCCACTGGGTCTGCCACGGGGTCTAGACCATCGTCC CCACTCCCTGGGACTGTGACCACCGTGCAGTGTGACAAGAGGGTCGGGATTCTCACATTAGCCAAACAGC AGCAGATAGCAGCCATTACCGCGGCCAGCCGACGTGCCGCCTACGCCCGATCACGCAGCAAAGAATCCAG TAGCTTCTCCGAGACTGGCCTCTTCCTGGACCCATCCATTCTCACTGACGGGGGTAGCCCCCAGCTCCAT CTCCAGCACCGAGGGGCCAAGTTTGCACTGACCACCGTGGCGCGGCACTTTGGTGCCGATCTGATCACCG GCGCTGGCAAGCTGTGGGAGCTGATGGCAGCCCCGCTGCAAGAGCATCTGCACCCATCCAAATTTGATGC CATTTTAGTGGATGACAAGGATGATCTTGCTCAGGAGCTTATTAACACACTGCAGGTGTTTGAGGTTCTA TGCCCAGCAGTGCATCAGAGTCTACACCCAAAGCTGACAGCCCTTCTGCCCAACCTGATCCAGTGCCTGC AGTACCCTTACACCGCCGTCCGCCACATGGCAGCCACCAGCCTGGGAGCCCTGGGCCAGGTCTCCATGGC CGAGACCATGAATCGCGTGCTGGAGGACGTCCTGCCACTCCTGGAGGCCGGGGACGGCGAGACGCAGCGC CGGGAGGGAGCCGTCGAGGCCCTGATGTGTCTCATCGAGAGGCTAGGGATGTCCGTGGTGCCATACATCG TGTTGCTGGTGGTGCCACTGCTGGGGCGGATGAGCGACCAAGCAGAGAGCGTGCGACTGACTGCTACGCA CTGCTTTGCCACGCTGATACGACTCATGCCACTGGAGGCAGGGATCCCGGACCCACCGGCCATGGCAGCC TCCTTGGTCAAGCAGAAGGCTAGGGAACGGCGCTTCCTGGAACAACTCCTAGACAGTAAAAAGCTGGATA ACTACGAAGTGCCTGTCACCATCAAAGCAGAGCTCAGGAAATACCAACAGGATGGTGTGAACTGGTTGGC GTTTCTCAACAAGTACAAGTTGCATGGGATTCTGTGCGACGACATGGGATTGGGCAAGACACTGCAGTCC ATCTGCATCATGGCTGGTGACCACTACCTTAGGGATAAAGCTTATAAAAAAACCCACCATGCAGACGCTG CCCCCGTGACATCCATTGTCATCTGTCCGCCCACCCTGACCGGTCACTGGGTCTTTGAGATTGAGAAATT CTGCTCAAGACAGTTCCTCAACCCCCTGCATTACACGGGTCCACCCACCGAACGGCAGATGTTGCGTAGT AGGGTGAAAAAGCACAACTTGGTTGTAGTGTCCTACGATATAGCTAGGAATGACATCGACTTCTTCAAGA CAATCCAGTGGAATTACTGTATACTTGATGAGGGCCACATCATCAAGAATGGCAAGACCAAGCTGGCTAA GGCTATCAAGCAGCTGAGTGCAGCACACAGGCTCATCCTATCAGGGACACCTATACAGAATAATGTGCTA GAGCTGTGGTCTCTGTTTGACTTCCTGATGCCTGGCTACCTGGGCACTGAGAAGCAGTTCACAGCCAGAT ACGCCAAGCCCATCATCCAGAGCAGGGACGCCAAGAGCTCCTCCAAGGAACAAGAAGCTGGTGCCTTGGC CATGGAGTCCCTACACAGGCAGGTCCTACCGTTCCTACTCCGACGTCTCAAGGAGGACGTGCTGGACGAT CTGCCTCCCAAGATTATACAGGACTATTACTGTGAGCTCAGTCCTCTACAGGTGCAACTGTATGAAGACT TTGCCAGGTCGAGAGCCAAGAAGGGTGTAGAGGCAAGCATCGGTAGCCCAGAGGATGAGAGGGAAACTGA GGCCAAGCCCCTGGCACCGGCTACAAGTCACATATTCCAGGCCCTTCAGTACTTACGCAAGGTCTGCAAT CATCCACTTCTGGTGTTAAACAAGAAACATCCCCAGTATGATAATGTCACCGCTCAACTAAGTGATCAGA ACACCTCCCTGCATGATATCGCACACGCACCCAAATTGACTGCACTCAAGCAGTTACTCCAAGACTGTGG CATCGGCGTGGAGGTCATGGGTAGTGAGCAGGAGGGATTGACTGAAGCCGTGGTGGGCCAGCACAGGGTA CTGCTGTTCTGTCAACTCAAGAGCATGCTGGATATTGTGGAGAAAGACTTACTAAGAAAGCACCTTCCCA ATGTAACCTACCTCAGGCTGGACGGCAGCGTACCGGCCGGCCAAAGACATGACATAGTCCACAGATTCAA CAATGATCCCTCTATTGACATCTTGCTGCTCACCACACACGTCGGAGGCTTAGGTCTCAATCTGACGGGA GCAGACACTGTGGTATTTGTGGAGCATGATTGGAACCCTACCAGGGATTTGCAGGCAATGGACAGAGCCC ACCGCATCGGTCAGAAGCGAGTGGTCAACGTGTACCGCCTCATCACAAGGGGAACTCTGGAAGAGAAAAT TATGGGATTGCAGAAGTTTAAGATGAACATCGCCAACACAGTCATCACCCAGGATAACTCCAGCCTTCAA TCCATGGGGACAGATCAGCTTCTGGACTTGTTTTCTCTTGACCAGAATCGTCCAGGAGGGTTGGAGGAAT CAAAGCAGGAGGCCTCAGCATCGTCGTTGTCATCTGGGGGAGGCAAGGGCAAGCAGACGGCCGGCAGCGT GCTGCAAGGATTGAGTCAACTCTGGGACGAGAAGCAATACGAGACAGAGTACAATCTGGACAGCTTCATG CAGTCACTGTCTAGTTGATGTTATAACTAGCGTAGTTGCGTAGACCCTCTATCTGCGGCTAGACTGAAGA GGGCGCTGTCTGCTGTGTCGCCTGACAGTGAGGGCAAGTGAAGAGCACGAGCATTGCACTGGGTGACACG CAATGTCCGTGACACACAATTGTTAGACTGAGTGTCACCTGGACAGCTTCATGCAGATTTAGACTACTTG GTGTTCTTACTAGCGTTGTCTGTTGGTTCTGTGGCTAGACTGAAGAGGGCGCTGTCTGCTGCGTCGCCTG ACTATGAGTGCGACAATGAAACGACACCAGGAGCTGTACAACCTGAACAGCCTCATGGAGATGTTACGGC CCAACTATGGCATTGTCCCAACTATAGGTTGGACGATTACAACTTTAGACCGTGTCTGTGGCTGGGAATC ATACACGAGTCTATGGTAGCGGCTGCGGCCACTTCCTATTGACCCGTGTGTAATTTCAAACCATAGCCAA TTAAATTGGACACAGTTACAATTAGGATCAACCCAAGTATAGTTTGGAATTCCCCAACTATTTGTTTGGA CTGTCCCAACAACCGTCCCAACTATGGTTGACACCATTGCCATAGTTGGGCTTACCTATATAGTTCTATG GAAGTTGTCTTTAAATTAGTTAATTCAAACCTGACACATGTAGGACATTTTCTGTGAATCTAACACAGGT TTTCATTAATTATTATCAAGGAACAGATGTCATTTAGCCCTGCTTTCAAAGTATTTTTTTTAAGATTAAC AATGTGGTTATATTTTTCTATAATATTGAACCTGCTGTGTTACATTGAAACTTGCATCTTTATGTGTAGA AGGTTTTGTACAGTCATAAAAAAAACTTTATTTTTGTTCAGTTGCAGATAAAATGAAGATGTTACAAAAG AAAGTGATTATCAAAAACTTTTGACATTAAAATACAAGTTATTGTTTCAATTGATTGTTGTAATGTGAAG TTACACACAAAAGTGATTACATGTAAATAAACCTTCGATATTCGCATTGCATATTGGGTATATGACAAAC AAAACCAGGCAATTTGTGCACAATTACCTATGGGGCTGTAAACCAGTTAAAACTTTCAACTGATTCCTCC TCAAATATACATCATTAAGAATTTAGTGATCATTTTTTTTTTTAAACATTGTTGTATTGATCATTTGAAA TACACTTATTTTAAAAGTTAGTTTTTTAAAGCGTGTCAGGATTCAGATTTTTTCGGGGAATCCCTTCTTA TTACTCATTAATATGAATATTATGACCCTGCAAAAATATTAGCCAATCACAGTCAAGCTTTCATGATCAC ACCTCCAACTCTGACCAATCACAATCGCTCGCCTCTGGGATTGTTGACTGGTACCCAGAAAGAAATTTCA AGTTAGTTCATCTTTTATTTCAAAAGTTTAAAAACTGAAACTTTGTCAATTATATTTCCTTTTATTTCAG AAGTTTAAAAACTGGATCTTTGTATTTGCAAATGAATTTTTCATATTCTCTATGCATAAGTAGGTGAATT GATCGATTTTGGAAAAATACTGAAGCAAAACATAACTTGAAGGGAATATACAACATTTGCAAACATC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds