Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038211746.1 PREDICTED: Patiria miniata TOX high mobility group box family member 4-B-like (LOC119737409), transcript variant X1, mRNA CATTGGCTACGCACCAAGGTCAGCGCCAGTGTAGCATCTCCGTCCCGCATCGTCGTTGTATCTCTCCGTC TCCTTTTCTCCTCCTACTAGTCCCTGATTGATTGTTATACACATGGTGTTGTGGCAAGAGGTTTTAATGT ACACGGCAAGCTCCCGATTGTGTCGTATATATATCCAACCTGTGGCTGTATCACGGGGGCTCAGGCACAT GTACGTACGCATGCCACCAGAGAACCACTCTAAAATCTTTCAACTCGTCAATCCGCATCCCAGATTTGCA AAACTCTACAACTGACGACAACCAAGGTAGGAGTTTCATATTAACAAGGACTCATCGGGACGTTTGTGTC GAGACCGGTGTGCCAGTTTTGAAGGGCCGAATATTTTTTACCAGTGGCCCGTTTTTTGGTTTTGTTCCGG AGTCGGGGATGAAGTGCCAAACGGAGGAGTCTAATGCTTGGATCCTACGCGGTGGTAGCTCCTCTATCGG AAACCACGCTAGAATGCCCACGGGATATTGGAGGGGCCAAGGACCAGCAGTCAGTTTTGTCAACGGATTT AACTTCAGCAGTCCTTCCGGTGTCCCCCATAACAACAACTTTGTGGCCGGCACCAATATGTCTTCACAAA CGTTTCACACTCCTAGTTTTGGGGATGATGAGTTTGATATTCCACCCATATCCCAGGGAATGGGGGAGAG CAACATCACAACCATGACAGACCACGCCTTCACAGCCCAGCCCGTCAGCGAGCAAGTAGGCAGCCAGGGG ATGCCCCAATACCACACGGACTCCATGCACGACCGTCGGGTCATGTCAAGCCCCTCCTCCATGAGTAATC AGACCCCGCCCCCCATGCAGCACCAACAGATGCTGACATCACCCGTCAATCACTCCAATCCCCCTATGTC GTGCTCGCCGTCGATGTCACAGTCCCTGACACAAGCCCTGACGCTGCCTTCCCCTACCCACGGTCACACC ATGACCGACCCCGCAAATCACTTCCCCAACACCATGTCCAACGTGGCCTTTACGGAACCGTTGAGTCACA TGACCGAGAGTCTACCCAATCCGGCCACCACGTCCATGTTGGTCAATCCGCAGTTCCCGCCTCATAATCT CGACATTCCCCCGATCACGGAGTCTACCGGTAGCCTGGGTACCATGAGCGCTATGATGCAGCCGTCCCAA GTGTCTTCATTCAGCCATTCGGGTCCGACGACCACCCAGATCTACAGCCCCTCGTATCACATGCCGCACA TGTCACACGGCATGGACTTGTTCTCTATGGACTCACATTCCAACCAGCACATGGGTCAGCTGTCCACAAT CAACCAGTCAGCGATCAGCTCTCAGCTCGGCATGCACGGCGGTCTGCAACCGGGGCAAGGCATGATGGGA AGGCATCCAACGTTAGGTAAAAATCTGGGTCCGGGGAATACGAGATCACCACACCAGGAAAGCAGCGAGG ATAGTGATGATAACACGCCATTGGCACAGTTTGCAGCCAAGAGGCCTGAAATCAAAGAAACGAAGAAGAA GCCCCCCAAGAGAAAACGCAAGAAGGATCCTAACGAGCCCCAGAAGCCCGTCTCGGCCTACGCGCTGTTC TTCAGGGACACCCAGGCCGCTATCAAGGGTCAGAATCCCAACGCTAGCTTTGGGGAGGTCTCCAAGATCG TAGCGTCAATGTGGGACAGTCTCGGCACCGAACAAAAACAGGCTTACAAACAACGAACAGAAACTGCCAA GAAAGAATACCTGAAAAAGCTGGCAGCGTACAGAGCAAGTTTAGTTTCAAAGGCTGCAATTGACACGACA CAGATCGAAGAGCAATCACCCAGCAAACAGAAGAAAACGACAGCAGCGCCGGTCAGCACCGTGGCGCCCC CTACCCCAGCCGGCCACACACACATCGCACCGCGCATCATCGCGCCCAAGCCCATAGTAACCGGCGTGCC TATTACAGTAACCATGGCATCCGCAGCTAAGCCCATGATGCAGCCTGGCTTGAACCAGATGCCGTCAGCA CAGCGGGTCATCAAGACGCACCCAATGATGGGCATGGACGGAATGCCGCCCCACAATCACCAGATCTGCA CCCGCAACGGTTGCAACAAGCCCAGTATAGAAAGCCCAGATTGGGACAACGAGTACTGCAGCAATGAATG CGTCGTGGACCACTGCAGAATACAGAAATATAGACACGAGTGGACACCTTACGCATTGCCGGGGTCGAGG TATACAGATGGGGAGGGTCTTCCCCCATATGCGTGGGTCAAAGGTCAAACTGAGCGCTGACCCGACCCAA AAGATGGCGTATCACTCTAACAAAACTTGAGATGTATTCACAGCTTGGGTTGCGTCAAACGGCCCAAACG GAGGCATGCTGCCGTCTGTCAAATGAGAGCACAGGGAACCAACGCGCAATGGATACCGGTGTGAAATATT TCCCACGATGCACCTTGGCTTCGACTGTCTCAATTTTTTTATTAAGTGTCATCGACAAATGTGGCTTTGT TTCTGGAGTCAGTATGAACTGGGCGGCACTAACGAGACACTTATTGGTGATTTCACAAAACGCTGGAGTA TTTCTGCTGGGTCACGTGATTGGTTTTTGACCAATCAGATGTCAGTTTACCGAACGGTTGAGCCAAGATA TTACAAAGGGCATTTTAGCCTTATATATGCTTGTTGAGTTTGCTAAACTATGTTCGTGCCTTTGCTTTGC CGAAAACTACTAAAACTGAATTCGAGACTGTGACAAAGGGTTGTTATAAAGTTTGTATTTAGAAACTCGA TTCTGATTGGGCGACTTCATTTCATGATTCATACCAGAAACCTGATTGGCTAATATTACAGCTTAGGAGA ATAAAGCGAATCGCGGAGATTCCTTGGTAAAAAAGGAACAGTCGCTGTGAAATCATCAATAAGGAAATAA ACTGGAATTTGAGGCAACGCTCACAAAAACTTTGTGTAAATGACTAGCAATAATCATGTAGTTATCTTTG CTAGAAAGTGTCAGAAATTCTTTTTTTCTGGAGTCAGTGACTCATGTATTAATATTCCTTCATAAATTAT TTATTATTTATGATCGCAAACAATGATGGCTATATTTTATCATACTATTTAATTTTTACAGTCTACGTGT TGTTATTTGAAACTCTACAACTTTGTTTTGTAATTGAAGGCAGTTTGCCTTTTTGTGTAAAGGGCTCCCT CTATTGAGGAAATGTCACAGGGACTCCGCTTTGTCAGTGGAAAATTAAGAAACTCAACATGCTTATTCTA TCAGCTGAGTAGCAGACGGCTTTCTTGTCAATTGTAGCAAACATCTTGTTCATTGCTTAACCCTTTCAGT ATCGTACACATCCTGGAAATACTTGCACTACTTATAATCTTGTCACTCATTTTCTTAAGTTAAAGATTCC CCCTCCCATCAAAGCATGTGTCTCTTTCAAATCCATCCATGATAAGAAGTGTGTTAGAAATCGTTTTCAC GAAAGGGCTTTGAAAATGCCTCCTTTTGAAACATAGAAATGGTCACCAGAACATGTCAGATAATACATAT TGTTCTCTAGTGAGCCTCAGATATTTTTTTCCACAACTCATTTTGTCCCTGTTGAACAAGAACTGAATGC AATAGTCGATTTCTCATGCAGAAGTTTTCAAACTGTACTGCATTTAATAATACCATGTCCTATTTGCATC AAACCCTCCATTGGTAGATGTCGAAAAGTGGCAGGAAAAAGCATGTTTATTCAGTTGCCAATATTGACCT GAAAAGCCACACTTCTAATCAGTTTCTATCATTTGTTTTTGAGAAAAATATGCATGTACTATTCTGGCGA TTAACAAATCCCTAAAATTCCTCTCGTGAAAAATGCTTCTTACAACTTTCTGTCAGCAGAGGGCGCTATT GCTTTTTAGTGGCGTTATCACATTATTAGGCTTGACCAGAGAAAAGCCTGTTACTTAGTGTACTTTATTT TGAAACCTGTAGAAAATCCAGCTCATAACTGTGGGGCAGAATCTTTTAGGACAAAATTACGGACACTTCC CTGAAAAGTGGGTATTGATTTTCTTCAGTGTGTTCAAGAACAGTTCAAATTCTACACAAAAAACAGTGGC GCACCCAGGATTTGGTTGGGGGGGGGGGGGGCTCAAATTTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds