Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038211538.1 PREDICTED: Patiria miniata ATP-binding cassette sub-family A member 3-like (LOC119737304), transcript variant X2, mRNA ATTACGTGTCCCAATCCTTTGCATTGCTGTCTGTTTATAGACCTGAACATTCCTGTGTGGTTGCGATGAC GGCAAGTTCTTAAGAAAATGTAGCTACATGTAACTCATAATTTGAAAACGGCAAGTTAGAGTGTGACATA AGGCTGTGTTTGCACCAAACAAACTGCATTGCCGCCTTGTCAAGGAGAGATCCTTCTTGCCTTTGAACAG TCCGTGGCGTTAGCCCGAGAAAGACGAGATGCGACGCAAACTGAACCAGCTGCTCCTCCTGACCTGGAAG AACTACGTCCTCCAGAAGCGCCACTGGATCCGAACCCTCTTCGAAATCGGGGTTCCCATCCTGGTGTCCC TCCTGCTGATATGGCTCCGTACCATAGTGGACTACACAAACTTCACCAAGCCTGATGTCTACGCTGGTTA TCCTATCGACTCGCTGCCTTCAAACCTGACAAGGGTGAATTTCCCTGGGCCTTTTCCCACCGCTTGGAGG ATGGCGTATACGCCCAACGGGACTGCCGAGAACCGCGTCATGGGGTTTGTGGTGGACAACTTGCAGTACT CTTTTTTTGCGAGACTAGAAACAGGCCGTGGTTTTGAAACCGAAGAAGACATGCTGGACTTCTTGACTGA TGCCAACGCCACGAATCAGAAGGAGTTTCTTGGGGGCGTGACCTTTCACAACCCCTTCCCCTCTGCCTAC GAGCTACCCTCCAACATAACCTACAGCATCCGCCTGAAGGCCAGCCAGCGCAACTACCCAGACGCCAAGT TCAACAACATCACAGGGGATTCTGGAAGGTGGCACACGGACACCCTCTTTGAGTTGATCAGCAGGCCTGG GCCACGGGAGAAGGGCAAAACCTGGGGAGGAAAACCTGGTTACATGAGAGAAGGCTTTCTCCCGCTGCAG TATGCCATCGACCGAGCCTTTCTACAGTTCCAGAACGTCAGCCTGGAGGACGTCTCGGTAGAGATGCGTC GCTATCCTTACCCGCCTTACTTTGACGATGATTTCATCCTGGTCATACAGATGCAGCTTCCGTTCTTACT CCTGATAAGCTTTGTCATCACGGCGATCACCATCACCAAGGGCGTGGTGTTAGAGAAGGAGCAAAAACTC AAGGAATCCATGAAGATCATGGGTTTGAGTAACTGGCTCCATTGGACAGCCTGGTACCTGAAGTACGCGT TATTTCTCCTCATATCTGTGGCCATCGTCACTGCCTTGTACAAGATTCCCGTTGCGGGCCACGGAGCTGT TATCAACAACTCCTCGTTTACCGTGCTGTTCCTGTTCTTCTTTATGTACTCCCTTGTAGTCATCGCCCAG TGTTTTGCCGTCAGCGTGCTGTTTTCAACAGCAAATACCGGTGCAGTGTTTATGGGACTGATCTGGTTCT TCTCCTACGTTCCCTACTTCTTCATCGTGCAGTACTATGAGACCATGTCCCGCAGCCTTAAGATGACGTC TTGCCTATTGGCCAACACAGGGATGGCCATGGGCGCCTATCTCATTGGCTTGTACGAAGGAACAGGTGAA GGGATCCAGTGGAACAATATCAATCGCCCCGTTTCCGTGGACGACAACTTGTCGTTCCTCGACGTCCTTC TGATGTTCCTTGTAGACATAGTCTGGTACCTCGTCTTCATGTGGTACGTGGAGGCAGTCTTTCCCGGCAG TTACGGGGTACCACGGAAATGGTACTTCCCTTTCCAGATATCTTATTGGTGCGGTCCTAAGGTGAAGCAT GTTGACGACCAGTGGGATGAGCGACCTCTGACCTCTGGCGGCCGTAGCCAGTCTCCGTCCTTCTTTGAGC CCGACCCAAAGGGCTTACATGCTGGGATCAAGATACAGAGCTTGACGAAGGTCTTTGGCAAAGACAAAGT AGCGGTCAATAAACTGACCCTCAACATGTACGAGGGTCAGATCACAGCCTTACTCGGCCACAACGGAGCC GGCAAGACCACCACCCTCTCCATGCTGACCGGGATGTTCCCTCCGTCCGACGGAACGGCCCTGGTCAATG ATTTTGACATCCGGACCGAGATTGATGGAGTCCGCCAGAGTTTGGGGTTGTGCCCCCAGCACGATGTACT GTTTGAAAGGTTGACCGTTAGAGAACACCTCTACTTTTTTGCAAAGTTGAAGGGTTGTCCATCTTCAAAG GTTAAGGAAGAAGTTGAGAATTACATCACTGCCTTAGAGTTGGAGGATAAGAGAGACGCACAGGCTAGGC AGCTGTCGGGAGGTATGAAGCGCAAGCTGTGTGTCGGAATCGCACTCATCTATGACTCCAAGGTGGTCAT GTTAGATGAGCCCACCTCAGGTATGGACCCCTCAGCACGTCGCTTCACCTGGGACCTGCTACAGCGCCAC CGTCAGGGCCGTACCATCCTACTAACTACCCATCACATGGATGAAGCAGACCTGCTGGGAGATCGCATTG CCATCATGGCCAAGGGGGAGCTGCAATGCGTGGGGACATCACTCTTCTTGAAGAAGAAATATGGTGTTGG TTATCACATGACCATCGCCAAGGCTCCGTCTTGTGACGTAGCGACCGTCTCGGCCCTGATCGCATCGCAC GTCCCCGGCATGCAGGAAGAGAGTAACGTAGGCACGGAGCTGTCGTATATCCTACCGGAGGAATCCGTGG GTCAGTTTGAGCAGCTCTTCACTGATCTTGAGACACGGAGAGTGGAACTGGGCATCAACAGTTACGGAGC ATCTGTCACCACAATGGAAGAGGTGTTTCTCAAAGTTGACAAGGAAGAGGGCGACGAAGTTGCTACTGAA AACGGCAAATTGGAGCCCAACGGTGGCACTAAAGCACATAGCCCTATCAACGGTGACGGTGCCACTAGCG TTGCACATGAGGCCAACAACACTGCATTTGGAGCTAAAAATGGTTTGGACATCGAGCAGGGTCCATCAGA TACACAACCCCTGATACTCATAGCCCAGCGCAACAGCGGTGTGACGCTGTACCTTCAACAATTCCGCGCC ATGTTCCAGAAGCGCATGTACCACACCTGGCGCAACTTCTTAGTCATGGCTGTCCAGCTGCTGATCCCGC TCTTCATGACCGCCGTCGCGCTTATCGCCATCAAGACATTCCCTGCAATCGGCGAGTCCCCTCCCTTACC TGTGAACATCAGAACCTACGGAAAGACCGAGGTCCCCTACTTCCTGCCCGACAATACGTCAGAGCTCATG CAGTCGGTCTCCGGCAGTTACGTCAGTTACTTGAAGCATCTAGATCAGAAACCCATCTACGTCAACAATG TCACGGATGCCAACACTACGAGCCTGGTGGACTACTTAATCGACATCGGCGGCAAAAGGCTGGTGACCTT CAACCGTGAAAACCTCGCCGCGGCCGTTTTCAGCGAGGACCAGCAGAAAATAGTTGCTACTGCATTCTTC AATGACCAGCCGTACCACACGCCACCGGCCTCACTCAGTGCTATCGACAACGCCCTGATGAAGCACTACC TGAAAGGGGAGCACATGGTGACGACGATTAACTACCCCTTACCCCGCACCGTCCACGAGAAGGCCAACGA TGATTTGGAGAGCCAGACCTTTACTGGGTTCAGCATCGCTTTCAATATGCTGTTTGGAATGTCCTTTCTG GCCAGCAGCTTTGTTCTCTTCTTGGTCAAGGAGGACGCCACCAAGGCAAAACACGTGCAGTTCGTGAGCG GCGTCCACTCATTAAACTTCTGGCTGTCCACACTCCTCTGGGATCTCATCAACTACACGGTGCCCTGTGT TCTGATCGTAGTCGCCTTTGCTGCTTTTGGCGTCGAAGCCTACACCGGTGACTCCCGCTTCTTGGCAATA TTCCTTCTACTCTTTCTCCACGGCTGGTCCATCATTCCTTTGATGTATCTCCTCTCTTTCCTCTTCACCG TGCCATCCACAGCCTTCGTCCGCCTCACCATGTTCAACATCATCTTTGGCATCGCCGCCTTCATGGCCGT CAACATCCTTGAGTTACCCTCGCTAAAACTTCAAAACGTCGCGGATGTTCTGTCCTGGGTCTTTTCTTTC TCTCCATCTTACTGCCTCGGCCAAGGCCTGTCGGATTTCTACGAGAACTACAACGTTCTGAAGATCTGCA GCTCCATTGAAAGTGAAGTCGGGCTGAATTGTAGCGACCCCAGAATATCAGCCAATAGTACCCTCTACAC GTTCAACAACAACTACCTTGGCTTCAAGGCACCGGGCATCGGCAAAGAGCTCACCTTCATGGCCGGCACC GGCATCTTGTACTTTCTCTTGGTCATTCTGGCAGAGGAGGGCCTCCTTCGCTCCTTGCGGTACTACCTGA GAGACCTGATCTGTGGTCAGTCCGGCCGAGACCCTCAAATGTCGCTGCTGCCTGAAAACGTCCTGGATGA GGATGTAAGGGCTGAGCAGTCCCGCATCCTTGACGGCCAGTACTTGCCAGACGCCCTGATTCTGAGGGAC TTGCGTAAAGTCTACTCCAGCCCCGGTAAGCCCGCCCTGGTAGCTGTCGAGGGTACCTCCTTAGGCATCC CGGCTGGGGAGTGCTTCGGCCTGCTTGGGGTCAACGGCGCGGGGAAGACAACAACTTTTAAGATGCTTAC GGGAGATGAGGCAGTGACAAGCGGTGATGCGCTAGTGGACGGGTTCAACATTAAGAACAACATCAAGCAG GTCCAGCAACGCATTGGCTACTGTCCTCAGTTTGATGCCTTGATCGATCAGCTGACGGGGCGTGAAACGC TTCGTCTGTACGCCCGGCTACGCGGCATGAAGGAAGCTGTCATTGAGAGCAAAGTTCAGGAGCTTCTTGT CTTGTTTAGTTTGACAGAGTACGCAGAAAAACAGACTAAAACCTACAGTGGAGGCAATAAGCGTAAGCTG AGTACCACCATAGCCCTAATTGGTGACCCGCCCATAGTCTTTCTGGATGAGCCTTCGACCGGCATGGATC CGGTAACCAAGCGACTGCTGTGGAAAACATTGTGCCAAGTTCGCAACGAGGGACGCTGCATTGTACTTAC GTCTCACAGCATGGAGGAGTGCGAAGCTCTATGCACCCGCCTAGCCATCATGGTCAACGGCCAGATCAAA TGTCTGGGTAGCACCCAACATCTTAAGAGCCGCTTCGGTAAAGGTTTCACCGTACTGGCCAAGGTGTCTT CATTGGAGGGTGTGCCCGACATGACGGAACTCAAACAGTTCATGGAGACTCAGTTCCCAGACAGCAAACT GAAGGACGAGCACCAAGGCATGGTGCACTACCACATCACTAACACCCAGCTGACATGGGCACAGATCTTC GGCACTATGGAGAGAGCCAAGTCACGCTATGACATCGAAGACTACTCCGTCAGTCAGACTACCCTGGAGC AGGTCTTCATTAACTTTGCTCGCATGCAGAGGGCAGACGAACTACAAAGTTAAGCCTAGAGTCAATAGTT TGAAAGGTTGATTGTGAATTTTGGTTCAAGTTGTGTTCCCCATGCTCTTCAACAAATTCCATTTGTTTTA TTAATAAATTTTCAACTTTGAATGTTTTATACATGACTTATTCCAATCAAAAAATGCTCCCTCCAAATTT GTTGTATGTCGGCAACCCTCTGAAAAGTTTTTTTTGTTTTGAGCACGAAAAGATCATTATCGATACTGAA TGTTGGGTGAGAAGCACTCTACCCCGTGAGAACGGATTCATTGTCTGGCAGCCAATAATTTGAAATTGCA AAGTAATAATTCAATTACTAAACATGGGCAGATTGTTTTTCGGTCGATGTCCCATTAAAAAATGCTAGAA AAATAGCAATTTAGAAAAGGAATCTATTTTTTCAAGATGAAAATAGCACGGGGACACAACTTTAATGCTA ATGATAGGTTTCATTTTTCAATTGGAAACCGAAATTCATGTTGTTTTGATTGGCAGTAAATCCTAGCACA GCAAAATGGCCTTGGAGATAGTTCAAGGTGTAACACTAGCATTTGCAAAAACAGCTTGAGCTGAAATTCG GAAAATACTAAGATGATATTAGTGTTCAACTACTCGTAAAATAACAACTTGTAAGGATTCCTACAAATTG AGATAAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds