Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038209330.1 PREDICTED: Patiria miniata PR domain zinc finger protein 10-like (LOC119735571), transcript variant X3, mRNA TCCACTGTACCGTGGGGCCAGGAGTGAATGGAGTGTGCCAAAATGGGCTTTACCACTTTGGATTCGGAGC CCGGATCCATATACATCACATTGCATTGCATAGCTAATCCTTTCAATTTCAAAAGTACCGGGCAGGCGGG TTGTGGGAAAAGTTACAATGAGATGCAAGAAAAAATGGCCTAAGCGCATCATGGAACAAGATGGCCGCCA ACCTGTTTGGCCGCCACACTATGTAGTGGACAGCGGGAATAATGTGGAGAACTACCGACAAGCTAGGCAG GATGACGAAATGCAGCACAATGGCGTCTCCAGCTCGGAGGGAGTGGGCGAGAGGCCACGTGAGTTCCGCC CCTACATGGCAGGCTACGAACCTGAACCTAGTGGACAAGCCTTCAGCGACAACGAACCCCAATCCACTGT CAGGGAGAGCGACATTGCCGTGGTCAGTTACCAGGATCAACCCTTGCCTGCCACTCCAGACAATGAAGCA GTCCCAGTGCAGCACCCCCTCACGCCGGACTCCAGCTTACCACCGGATTCCCCCGTTCTCCATCAAATGG AACCTCCCGCCCAGTCGGCGAGCCAATCCCTGCCGCAAGTGGTCCAGGTGTACAATCTGCCCGCACCACT GGAGACCAGGATAAGGGGTGCAGATGACACAGTGGATCATGCAAGTGGAGGGGATGTCCTGGCGATGATG GCTGAAGGAGGTCGTGGGTTGGCAGAGCAAGTGGGCCCAGGACCGTCAGGTGCTTCTACATCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGAGCAAAACTTTGAAGGGAGGCGATCGACTAGGCTGTCGCAGCTGTCTCA ACTCCCGAGCACTTCGGGGAAGTACTTTGGGGATGAAGATGAGTCATTGGACGATGTCGGCAATCTGTTG GATGAGGAGGAATTCCTGAAGCAAGGAGCTCTCCAGACCATCTCTGATAACCCTGTCATCTCCAGGGCCA GGGCCAGCCTCCCGAGTCAGCTGCAGATCTTCAAGGTGGACAACAACCAAGTTGGAGTATTTGCCAAGCG ATCCATCCCCAAGCGAACCCAGTTTGGGCCTTTGGAAGGCAAGCATATCCGGGCAGAGTTTCTGCCTAAA GGGTCCATGAAGTGGCTGGTCAAGCAAGATGGCATGGATGCCTACTTGGACTGCAGCGACGAACAGGAGA GCAACTGGATGGGCTTCATCCGGCCAGCCAAGCGCTACAGCGAGCAGAACCTGATTGCTTTCCAGATGGA GAACGCCATGTACTTTGCTACCATCAAGACAGTGGAAGCCAAGTCGGAGCTGAAGGTGTGGTACGCCAAG TCTTACGCCGAGCTGATTGGGGAGAAGGTGCTGGAGATCACAGCAGAGGAGGCAGCAGCAGAGCTCCAAG ACAAAGAAAATTCCTGGCCCTGCTTTGAGTGCAGCCGCAAATTCCGCACATCGGACCTCCTTCAGAAACA TTTGGCAACCCACGATGCTGTGCACAGTCGGCCATCCCGGGGCCGGACCAGGGGCCGGCGAGGCCGCCCT CGCAAGTACCCCGAGGGATACCAGCGGAAGCAGATGGTGGCCCAGGCTAAGCTGCGGCAGTCCCGTCGCA TCCAGCGCAAAAAGCCTGAGCAGTACCACTGCAACATGTGCCCCAAGGCCTTTCCACGGCTGTACAGTCT CCAACGCCACATGGTCATGCACTCAGGTGAAAAGAACTTTACCTGCAATGTTTGCAACAAGACCTTTGCC CACATCTATAACCGCACGCGTCACTTGCGGCGTCACGAAGAGAAGGGTGAGTACCCTGGCATGCCGCTGA GCAAGCAGTCGGTACAGTCAAGCTGGGGCTGTGACAGCTGCGATTTGGAGTTTGAGAGTGAAGAGCTCTT GAACCTGCATGAGCTAACACACTCGCCATTGCTGACTGACCCAGAGTGGGACGAAGGGGAAGAAGGTCCC ATGGCAGTGGCAGCGCGTCTTTTGGTAGATGCCTCTGCGATAGTTGGAAACAACCCATCAGGAGAAGGTA CCTCTGCACAGCCATTTGATCTCCAGGCCCCATCAGCTGTGCCTGTCCACATCCATATTTCAGGGCAGCC ATCAGCCAGTCCGAATTCCCAAGCACCTGGTGGAATTACCCCCATAGTCCAACCTCCTGCTCAGGCATCC AACCAACCGAGATCAACAGCTCAGCAGACTCTCCAGCTGCCGACATCTGCTCAACAGACGACTATGTCTG TGTCCTATCCTCAAGCCCCCAACCAGCCAACTATTCAGGGACTAGCCCCACAGGTTTCGGCGCCACCTCA GTATCCATCACATAATCAGGTTGCTACTATGCCTCAGGCACCCACACAGCCCCAGACCCAGTCCAGGTCC CAAGCCCAACAACTGGCATCAGGAAATCTCCCCGGGTCCGGTGGGATTTTTCAAGGTGATGGCTCTGCAG GATCCAACCAAGCTGGACAAAGTCAGGAAGTAAACCTGGTCCCTGAGAGCCCTCTGTGCTGCCCAGAGTG CAATGAAACCTTCCAAAGTAGAAAATTCCTGGCTCTCCATGCATCTGGTCATGGAAAGAATCGCCCTAAT GTGGAGAAGCAACCACCTATTCACCGGTGTGGGCAGTGCAGCAAGGTCTTCAAGGACAAGGCAAAATTTG AGCGACATCTCAACGTCCACTCTAGTGATGCTGTCAAGCCACTGCAGTGTAATATCTGCTTTAAGCGCTT CATGAGCAACTCGGCCATTGCCTGCCACATGAAGGTCCACACAGTGCAGAAGTACTACAAGTGTCCCTTC TGTGAAGAGGGCTTTGACAGAATGGAGTTGCTGCGCAGCCATGTGCCCTACCACACTGTCAACGGCCTCT ACACTTGCCCTCATTGTAACAAGCAGTTCAGAGATTACCCCCAGATCCGGAAGCATATCCGGGGCTTCCA CTCCCAGAAGGAGTTCCCCTGCCCACACTGCGAACGGATCTTTCCCAGGCCTGATAAGCTCAAGCTTCAC ATGCTACGCCACTCAGATCACAAGGACTTTTTGTGTGCCAATTGTGGCAAGCAGTTCAAGCGCAAGGACA AACTGAAGGAACATATGCATCGGATGCACAACCCAAAGCGGGAGGCGGCAAACCTGACCATGGGCAAGCA GCCTAAGAAGACACCCTTCAAGCCTAAGTTTGCCCCAACAGACATCAACGCTTTCACCTTTAAATGCCGC TTGTGTTCCATAGGGTTCAAGAGGCGTGGGATGCTGGTCAACCACCTCGCCAAACAGCATCCTGAGACAC CACCAGAGTCTGTGCCCGAGCTAAACCTGCCCATTGTGAAGCCCAACCGCAACTATTTCTGTGCTTACTG CGAGAAGATTTACAAGAGCAGCAGTAAACGGAAGATCCACATCTTGAAGAATCACCCAGGGGCAACAGTT CCACCGAGTCTGCGGAAGACCAAGGGTGATCCCAACAGTCCCCTAGGGGACCCCCACACAGCACCTGCGG GTACAACCACGACCCACTACTTTGCTTGTGCCCACTGTCCACGTCAGTACAGCACCAAAGCCAAGATGAT GGATCATGTACGGAAAAAGCACATGGATCCGGTGCCGCAGACCATGACATCCACTACTCCTGCCACAGTG ACTGTCCTACAGCAGCCAGATGGTCAGTTGTATCAGGACGGTCAGCAGGTTACCCAGATAGCTGTTGTGG CCCATGTCCAGGATGGCATGCCTGATACAGTCTACATCCAAGAAGCTCCAGACTTCCCGCACAGTAGCGA GGTCCAAACCATCACGCCAGTTGCACTCACCAATAACATCACGGGACAAACCAACCAGCCAATCCTATCT TCACTTCATGGCCAAGCTGCCCAGGTCATTGCAACGATTGCTGCAGCAGCTCAAGAAGCCGCCCAGCAAC AACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGACCAATCAGGATCCGCAGATCATTCGTCAGCCAGA GCAACTGATCCGTTACATTGACACCAGCAATGCCACCCCTGTCCAGACAGAGCCAGTCCAAGCAGCTGAT CTCCTGACTCAAGCCATGTCTGAGCTATCTCAGTCCATCGAGTTCCGTCAGCAGCCAGTTGGTGACTATC AGCAGCTTACCCAGCGCATTATCCAGCAAGTTCAACCTGGCGGGATCCAGCTTCAGCCCCAGACCATCCA AGTCTCCCAGATCCCCGTCTCTCAGATACCCGTTTCTCAGATCTCAGCCACACAGATTCCTGTCACCCAG ATCCCTGTCTCCCACATAACGCAGGCAGGCATCGCTGTGACGCAGATACCCATCACATACGTCACACAGA CCACGACATCGAGTGGCGGTATCACAACGACACAGCCCGTGGTTGATGTCAGCCAGCTACGCCAGACGGA CTCTCCATACCAACCCCAGCTTCTAAGTTTGCAGAATAGCACACAGCCAATGAGTTCTCCTACCACAATA CAGAGCCAGCCGCAAGACCAACAACAGCAGCAGCAGCAGCAACAACAGCAACAACAGCAACAACAGCAAC AACAGCAGCAAACAGTATTCATTCCTCGCTCTTGGGCAAATTATACCCCTCAGTATCGTTAAACTACAGT TTTGATTCATTCATAGAAATGAAGGAAGCAGTAGGGCTGTATTAACTTGTAAAGCAAATTGTTTTCGTAG TTGGCAGTTGATAAATCTCAGCCTTAACCCTAAAACCCTCCCAGACACTTCAAAAGTCTCACGCCCTCGA TGAGGGTTTGCGTAGTGTATACGCACAGCATTTTGTGAACAGTTTTGAAAGCCAATGTCGAGTCTAGGTT TTATTTCATCTCTATACCCGTTGTTTTACAAAAAACATGGCATCAAACTTGACCAATCAACAGCTTTACA CATTTCTGATCGAAATGATGTCACAGTTTTGTAAAGTTGACTCCGATTGGCTGGCGCGCGGGGTCGCATA AATTTGCATGCTTAGATTCATAAGATGTTGGACCCGAAACAGAGGGAGCTCCGTTGGACAACGGGTGATG CTCAGAAAGTTTCTGAAAGGTTCACTGAACCTGCCAGACACTTTTGTTTAAAATCATGTGCTAGGTTTGG AGGATTTTGATGATTAACCCTGACCATTCCAGACACTTGATACCCCAAAAGATGTCATTTGATTACTTTA TTATTTATTGGTAGCTTTTCTCGGTGCCAGGAGGGTCTGTGTGCGCTTATCCTAGCAGAATTTTAGAGTT TGGGTAACATTTTTAATTCACCTTGAAGCCACTTCACTTGAAATGGAAATCAATTTTTAATTTTCTTTTT ATTTTGTACATTGTATTTTGAAATGTGCTTTTTTGGGGAATGTCAGTGTCAAAAAAAAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds