Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038207554.1 PREDICTED: Patiria miniata tyrosine-protein kinase ABL1-like (LOC119734200), transcript variant X1, mRNA TTCCAGTTGCATGTACTTTACCACCAACCAGCCCCTCTTGTGTTGTGTGTACACAGGGTGTCTGAGTATT TGGAGTGTTAAATTATTTCTTGATACAGCGGTACTACAAGCAGGGGATACAGTGTTACTTATGAATGAAG ATTTGGAGGGATTGGACTTCCTGGGTGTGTGTGTGACGTTTTTTTCACTGTGCATTGTTTTGGAAGGATG TTGGTTATTTGCTTGAGGGGCATTTTCTCCACTAGGACTCGGAGTGTACATTTACACCGGCATGACCGGG CTGGCTGATTTCACACCACTGTCTTGCTACAAGCAGTGAAGTATGATATATGGGGTGAATTTCTTATGAA TCGGCTGTCTGCATAATTCATTGCCTCTGAAAGACTGGAACTTCTTCTGCACACACAGTATCCAATGGGA TGTTAATGATATTCTCACCGCAGAGTCTGTCTCGCTGTGTCAATCTCTGATTCATTTTTCGGGACGAAAC ACCCCAGAGGCATACATTAGCATCGGGCGGAACCCCAGACACAGTCAAGGGCTTTGTTGCACAATGGCTG CTCATAATATTCATAATTTCCACGTCTTCGGAAACAATGATGCTACTCCTGCATGACGGTAGACTCTTGT GTCAAAACAATAGCCTCTGGTTTGAGAGGAGTTGAAGACATTCTGGGGGTGGGGAAAGAATAGAAAATTG GACGCCGATGGAATTACATGTGGAAACACCAATTCAGCAGCCGGGATCCAAGATAATTTCTGGGAGCGCC GTCTTCCCGATGAAGGGGGAGAACAAGATCAAGACCAAGAAATCGCGGCTGATGCCGTCGCGGCTGCAGA TTTTGCCGCGGCCCGAGGATGGGGGCGCTCTTCCACTGGACGTTGTGGTGCTGCGCGACAGGGCCAACCG AGCGCCGCGCAAGAACCGGGCGGCGGTGTGCGAACGCTGCCGTCTGGAAAGAATGGGCAGACAGCAACAG CAGCAGCAGCAACAACAGCAGCGAGAACCCTGCCCAGACTGTCTGTCACACTGTTTGCTACCATCTTTGT CAGTGTCACTGCTCCAGAGTATGTATCATGCTGAGAATTTTCCAGACAGCATCCAGTCACGGCCCCTCCC CAGCACCCCGTCGCACGGCCCGGTGGACCTCCCGCGATGGAACTCAAGCGAGGAGCTGAATGCCCAGGAT GACCCCGAGCTCTTCGTGGTGCTCTACGACTTCAGTGGAAGCGGGGAGAACCAACTCAATGTTCGCAAAG ATGAGAATGTGCGCATCATCTCCTACAACAAGAACGGCGAATGGTGCGAAGCCAAGAAGACGTCCAACGG CAAGTCAGGCTGGGTGCCTTCCAGCTACGTCACCCCCGTCAGCAGTCTAGAGAAGCACTCGTGGTACCAC GGCCCCATCTCCCGCACCGCGGCCGAGTACTTGCTCAGCAGCGGCATAGACGGCAGCTTCCTGGTCCGTG ACAGCGAGAGCAGCCCAGGCCAGCTGTCCATCTCGCTGCGCTTCGCTGGGAGGGTGTACCACTATCGGAT CAACCACTCCCCAGATCTGACCAAGTTCTTTGTCACTAACGAGAGCCAGTTCCCGACCGTAGCCGAGCTG GTCCACCACCATTCCAAGGACGCCGACGGCCTGATCACCACGCTACGGTTCCCTGCGGCCAAGACCAACA AGCCAACGATCTACGGCGTCTCACCGCAGCCAGACGAGTGGGAGATTGAGCGGACAGACATCTCCATGAG GAACAAGCTGGGCGGGGGGCAGTACGGGGAGGTGTACGAGGCTGTCTGGAAGAAGCACAGCAAGATCGTG GCAGTCAAGACAGTCAGGGAAGAGAATATGAGAGTGGACGAGTTTTTGCGAGAGGCAGCGGTCATGAAGA CGATCAAGCATCCCAATTTGGTCCAGCTACTAGGCGTATGCACCCGTGAGCCCCCCTTCTACATCATCAC TGAGTTCATGCAGCACGGCAATCTCTTGGAGTACCTCAGGGAGAATGATGACACCACACTGCCGGCCGTC ACGCTGCTCTACATGGCCTCCCAGGTGGCCTCCGCCATGTGCTACTTGGAGTCCAAGAGCTTCATTCACA GGGATCTGGCAGCGAGGAACTGCCTGCTGGGCGACAACCACCTGGTCAAGGTGGCTGATTTTGGCCTGGC CAGGATCGTGAGCGGTGACATCTACACGGCCCAGGCCGGGGCCAAGTTCCCCATCAAGTGGACAGCCCCG GAGAGCCTGGCTTACAACAAGTTCTCCAACAAGTCGGACATATGGGCCTTCGGTATCTTACTTTGGGAGA TTGCCACTTATGGCAGCTCTCCGTACCCTGGCGTGGAGCTCCAGCACGTCTACGAGAAGCTAGAGCGAGG CTACCGGATGGAGCGGCCCGAGGGCTGCCCGGCAGACGTCTACAAACTCATGCTCAAGTGCTGGGAGTGG AGCGCAGCTGAGCGGCCAGACTTCATCGGCATCCAGGAGGAGATGAACAACATGTTTCAGAACTCCAGCA TCAGCGAGGAGGTGGAGAAGTCCTTACACCGGCGACGGGAGCCACCGTTGCTTCCAACGAAGAACAGGAG CAGCAGGAAGGGGAGCGGAGGAGGAGGCGGGGGAGGGTCTGAGGGGGCGGAGCATCATGGCAGAGGAGGG GGCAAGGAGGCCCCTGGCGATAGCACCAAACAAAGACAAAGCCCTCAAAACTCCCCCGAACATAATCGGA AGAAGCTTCCCTTCAAGCTCCCTAACCTTCCCCGCAAGAAGACCGACCGACCCAAACAGCAAGACCAAGG CACCCACCACCACCAGCAGCAGCAGCAGCATCACCCCCATCACCACCATCCCCCAGACAGGCAGATCAGC TCAACTGAGGAGGATGCCTCCACAAGAGGCCATCACATCAACCACCAGGAGGTCCCCGAGAAGCCCCGTC GTGGCTCGCCGATTCATCGGCAGGAGAATGGAACCACCCGTCTCCACGATACTGTACACCAGGAGCTGAA CTCGTGCTTGCACAACTCCTCCCAGTCCCACGGCCAGACTAGCTCCGAGAGTGGCGGGGACAATAGCGGA GGCTCGGGCCAGAATGTGCGCGTTGCGCTCAGGCCTCCCATCAATGGGCGCAAGAAACCTCGCAAGGAGA GGAAGAAGAGTGCTGATGAAGCCCTGATAGAGGAGCAAGACGGACCCTTTCCAATCCCGCGATCCTCCTC GTCAAGCCCAACCTGCGAGCGCAAACCCAGGAAGACCGAAGCACTGCCAGAGGTGACAGAGGAACATACC ATGAGGCGCAAGGCTCTCAAACCTCCCCCAAAATTGGACATCAGGCACCGAGATCTCACCCAGGAGACAG ACAATGCCAAAGAGCAGCTGGCTAAGACCAAATCGCTACCCTACTCCAAGAAAAACACCCTGCCGCCTCC CCCGACAAGCCCAGTGTTGAGCCCCGAACCGGAGAGCCCCAGGGGAACTCTGCCCAATTATGGAACAAGG ACCCGGGATAAGGGTAAGCTTTCCCGCCCGACTGTGCCACCCCCTGCGCCCCCTGCCGACGCGGTGACAT CACCTTCGTCAGAATCCAGTCCAAGTCCCCACGGCTCTCCTAGCAAATCCTCCCAAGTGACATCCTCCTC CTCATCAAACAAACCAACCCCGTTATCCCCCAAACCCCAAATCATAGGACCTAAGCCCATTCTCAGTCCT AAACCCGACCTGACCAGCCCGAAATACCAGCAGCAGACGGCTCTGGTGCCCCCAAAGCCCCAGAAGCGGA CCTCCATCCAAACAAAGCCCCTGTCTGGACAGACGGAAAATTCTACCAAGGTAGGACCGATCTCCAAATC ATTCATCCTCCAGCTCTCCGATTCCCTCAGCTTCAAAGCGGACTCCATCCAGGACCACCGGGAATTTGGC CGGTGTAGTGATCTCTGCGCGGACCTGGAGATCTTTTACAGTACATGCATCAAGTACCTGGAATCGCTGC CCGTCCGGATGCGCTTCTCGGTCCGGGAACACTTGAGTGCGCTAGACACGCACGTGCAAAACTTGAAAAT GAAGACGACGACGGGCTCCGACAGCCAGCTGGGGTCAATCCTCAGCGACGTCCAAAAACAGATGGAGGAG ATAAGGTCCCTGATTCAACGATAGCTCCCTCTTGGGAGATTGTATAGTATATCATTAATATCTTATAGCT CTTTACAATGTGCTCTTTCGTATTTCAGGCATTGTTGATGATGTCTGTGTATAAACACTTCGAAGTATTT CATTCCCTACACATGCCTTCTACAATGAATTTTAAAAAAAATGGCACCTCACATGGAAAAACATGATTAT TTCTCAATTTCAAAATATCAGTGTTAAGCCTCGCTAAATGTCCTTCAAAAACTTGCAAGTGAGAGAGTTT AGTCTACCTAAGCTCCAACTTGTCTGAGTACCTCAGTTATTTTAAGTCCTTAATCCTTGCATGAGCTGGG AATGCTATCGTCCAGAAAGGGTTTTGCCATCTGCAAGATGTTTGGTGGGATATGCTGGTAAGCTTAACAG CTTATTGTACCACCTTGGGTCAAAATAGCAAGAGTTTGCTGTCACAGGAGCAGCAAAAATTCCTAATAAT TGTTTTCATTTTGAAGTGTAAATTGTGGTGACTCTGTATTAAAGACAAGACAACAAAATGGATTTGATAT ATGAGGCTACTTTTTAAATTGCGTGTGGGGAGGCACATGCCCTCTGTACTCAAGAGGCTGATGTATTACG CATGTATATGAATAGCTTTAAACGTTCAGAACATTGTTATCAAACAATCAGCAATTTGAATGTGGTTCAC TTTATCCTGTGATACATTCTAAGGAAACTATGGTGACTGCGGTTTGTTAGAAAAGGAACTTAAAGTTGCA ACCAGACGTCTTGCAGATGGGAAACCCTTGCATAAATTGACTGTTTCTTGACCTAGAGTTAACCGTGATC TCTTAGATCCTTCGAAATGCACCAAGAGGTTTTCCAGGAGTTTGCAGGATTTAGGAAGTTAGTCCACTTG CAACTTCAATCCCAAATGGTAAACCTTTGGTTTCCTGCATAATGGTGGGTTTTGTAGGATTGAGGAAGGT TTCTAGCAAAAACATTTAAAGATTTTGTTAATTTCTTTTCCACCCAGGGGATTAGTTATCGTTCAAATCT GTGACCTCTTGGTCAAAGGTTATCATCGTCATACCAATCTGATGGTGGCATGGGTGGCTAGTGCGTAAAG CGCTTGCCTCTCATCACTGTGGCCTGGGTTCGATTCCCGGTTCGGACCATTTGTGAGTAGAGTTGTGCGT TGGTTCTCTCCTGTGCCACAAGGGTTTTTCTCCGGGCTCTCCGGTTTTCCTCCCTCCGCAAAAATCAAAC ACTTTTGATCTCTGGTTGTGCTCCTCGGTCAGACATAAGTCGTATGGCGGCTGCCAAAGGCGCCTTTACA TGCGTTCAGCTCGTCCATGTTGTAGCCGTGTCCTTCATAATTCAGCTTCTCAGCTGCGAGTAAGGATGAT TAGCCCCCTAAATTATTAGTATAATCTAGTCAGTGACCTGCCCCCCGATTGGACCAGATTACCCCAAGGA CTACATGCAATCCCCGCAGAATGTGCACTGGGTACCAGACAAACCTTTGAGGGGGGTTTCTCTGATTTTT AGACCAATGTGTGTAGGAGGGCACAAGTTTCTTAGATTTCAAGCTTAATTCTGAGAATGGGATGGCTTTC TTCTAAACCCTTTGCGAGACCAAAATGCTCTTTCTTACACACTCCGACTTGAAAAGAAACCTCTAAACAA CCTGCCTTAATTAGATCTAAGAAAACCCTTTAAAATGTTAAGATGCCTCTTTGAAGTGTTCTTTGTATTA AGGAACGTGCGAGGTAAAGACGTATTTCGATAAAAACAAATTCTATGATTATATATGTATATGTCACGTG TTGTATTTGTATATGTATTGTAACATTGGGTTATTGCCTGCCTTGTATGATATTAAAAAAAAGTTTTTAA AAATCAAGTCAGCATACCAAATCTATAATGAATACCCATGCAGTAGGGAGTATTTCAGAACTTGAGTATT TTGGTTCCTTATGGAACAATCAGTGTAAAATCTGAAAAGAAATTCCCATATGGGCAAAAATTCCCATATG GGTGTGCATGTACCGGTACCTTATATACCTCAAATGGGCAAGGATTCCCACATGGGTGTACTGGTTTTCT CTCCCATGGGCAAACTTTCCCATATGGGTAAACCTTCCCAAATAGGCAAGCTTTACCAACTTCCTTCCAT AATTAGTTTCATCAATGTGTAGCCCCCCTCCCCCCAAAAAACCTCTTCGTATTAAAACTTATAAAGTAAA ATTTAAAAAAAAAATTGGAATATCAGTCCAGTGTTAAGACACATCTTCCCAAACCTGACCTTTTGTCATT TGTTTTGATCTTTCATTTTTATTGATTTTTTAGTTATATTTGTTTTAATGTCTTTTTAGATTATTATCAA TTAACAATAGCAGTTGTTATATACAACGCCTGAATAAATCCCTGTAGTTTGATTGATGGGTTGTTGATCA TGGCATCACATATCATGGAATTATTCGTCCGAACCCACGGCCCGGCCTCCCTGCATATTAGAAGTCCCAT TCCACGATAAATAGAAGTTACCTTGCACGGACATACTGTTACCAATCAGGTGGTGGGAATTTATTCAGGC ATTGTAGCGAATAAATAATTAATGTTTCACATTTTTGTAATGAAAGTAATAATTTTGTTCAGTGACGGAT GGAATGTTCTACTCCACGAGGTGCATGGATCATTCCATGTCACTGCGTGAACTTATTCTAACAATTGCAC TCCAAACATTAATTATTTGTATATTGAAACGGAAATATACGAAGTAACCAAATTTGGTGAATTGTGACAA TATCTTCAGCAGTGTACTTAAAGACTTTGCAGTCCGTAAGAGAATTTACACAGATCCGACAATAACTGAT ACGCACATAAATTAACTTTCCATTGTCCGGTTTTGCTGATGCGCCATAGTGTTATGTGATCGCACTGATG TAGTTTACTGTTTCGCTTTATTTCTGGCTTTTCAACAAAACTGGATGTTTGTAGTCCGGTACCTTCATGT GAGGCAAAATTCTTCAGACTTCCAATCATTGCAGCGTTACGCATTTCATACGAGTGTGGCATTTGTCACA CTTTCAAGCAAGTGGGCCAACGCACTTTTGATATTTGACTCTGACATCAGATCCTGCATATCCAATCAGA GAGCTCCTTGTCATCACATGATCAGAGCATTGGCCAGTCAGATTGAACTGAACATCAAGTTATGTCGTTG TTTTTTTTCATGTCTTTCCTTAAGTCTGTATTTTTTATTCAGGAGATTTAAGCTGTTGTTATTTTGTTTA ATCTTCATAGTTTGGAGATATATTTTCGGATGTTGTCTTTGAGATTCCCAAGTAATTATGCAATGATTTT GAGATTGTTTTTTTTTAAGCGACAAAACGGTTGGGAATGCAATTGAAGTTGTTCACATTTAAGAACTGCT GCTGTTCACTATGCTGGACGCTATGTGTCTGTTAATGAAACATGTGCCGAGATGACAAAGAAATTAAAAC ATTTTGCTGTATGCTGTAATATTTGTAATAAAAAGTGATTATCTTGAAGCATATAATTCAACAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds