Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038204174.1 PREDICTED: Patiria miniata zinc finger CCHC domain-containing protein 24-like (LOC119731144), transcript variant X1, mRNA CTTTCAGGTCTGTGGAGAATTGATGAGCTGTTCGTGGTTTTCATTGGCTGTTTGGCCTGATTGGCGTCCC GTGCTAGGAATTTGATGTCCGTGTCACAGGGGGTCGAGTTGATGTCGACATAATAATTCCCCATACCCGG ACCCGAGAGAGTCTGCGGCCATTACGGAATAGTATACACCAGGGTTTTTTCCCTTCTGAAGTAATCTACA AGCTGGTATATGAAGCATTAGTTCAGCAGTTTTTGAGGCAGTGAAGTTTTGTCCAAGGGGCTAGCGAAGC GATTTGCCGATTGTGCCATTTTGGGTAATCGCGCTTGAATGAGGCACACGGACTCGACAGGTTTGACTGG CAACATGGCGGAGATTTCCTCCATGAGCACAGTAGACATGAACGCGACAAATATGGCCAATTCGGCGGTG TTTCCACCCGGCTCCACACAGCAGATTTTCAACAACTGGATGGCTTACTGGCCGCAGATACAGCAGCAGC AACAGCAACAGCATCAGCAAGATCAGCAAGGAAACACCGTGCCGACTGGATCTAAAGGCGGGCATCATCA CGGGCTTCCTAACGGGCTGAACTCGGCAGCCGACCAACTCGGTTTGTCCGGAACCTGGTCCGAGAAATAC ATCCAAGAGAATCCAGATCTCTCAAGTCAGTTGTCAGACTTCTTGATGATGCAGAATGGGGAGCATCCAT ACATCCAGAACAACACGGCAAGACACTCACAGAGACTGGAGGAGGTGGCTAACTTCGCCTTCAGAAACAA TAAGAATCAAATCACAAGCCCACTGCAATCTATGAAGACGATGATGACCTCCCCATACGGCAGTATCGGT GACATAGCTGACCAGTTCAGCGATCTGTCCCTCTCGCCAATTGATCGTAAGATGGGAAGAAGACCGCCCC CAACCTATCTCTGCCACCTGTGCTTCAACAAAGGACACTACATCAAAGACTGCCCACAGGTATGCATTGA TGCTCGTCCAAAGGGTGAAGGACTGACACCCTACCAGGGCAAGAAGAGATGCTTCGGAGAGTACAAGTGC CCCAAGTGCAAGAGAAAATGGATGAGCGGCAACAGCTGGGCCAACATGGGCCAGGAGTGCATCAAGTGCC ATATCAATGTCTACCCACACAAGCAGCGCCCTCTGGAGAAACCAGACGGCTTGGACGTCTCTGACCAAAG CAAGGAGCACCCTCAGCATCTGTGTGAGAAGTGCAAGGCACTGGGATACTACTGCCGTCGTGTCCAGTAG GTTTGAACCTACCCCCACCCCAACCCACCCGACACCACTCCTATGTTGTAGTCGAATCTATCACAAGTCC AATCAAAAGTCAATCACAAAGTCCTTTCAGTTTCACAAGTCCAGTCACAAGTAAAGGGATGAACAATAAC AAAGGAATGTGCTTTTGGTCACAGTTCATTTGAGTAGCTTGTAACTTGATATGATATCGGATGGCTTCGT TATGGACTTGTGATGGAATCAACTACACCACTGCCCATCCCCCACCAAGACCGAAGTTATGATAGTCGCT TATCCTTAGTTGTAGAGAAAGAAGACCTCAAATGTCAATCATAATTCATCAAGTCTCCAGCTGATCAAAT GAACTGTGATGGTGGCTTTTGATCCTGCCTCATTGTTAATCCGGCCACTTGAGACCCAAGGATTTGACTT CCGATGGACTGATACAATTGAAATCCACTTCAATTAAAACTGAGAGTATTTTTGTGTGACGATATCCACG AAGAGAGTCATATTGGTCTCAGAATCATGATTGTACTGCCCTAATTGATTCCAAGATAAAAAAAAAACAC ATTGCCCAAACAGATCATGGTCAGTAATTGAAAGGTTTTCAAGCTTTTTTTACGGAATTCATATAGACTA GCTGGAGAAAGAGGATTTGGAGCATGGTTTTTGATGGTAGAAGTTTCTGTTGCATTGTATCTTGAAGGTT CTGGGTGTTGGAATTTGGAAATTGGATATTTGGATTTTTCTCTACGTCAATTGTCATTTCTTTTCTTCAA AGAAACTTAATTCTACTAAAGTCTTACGAAATGTGAAAAGTTCGGATTAACGGCTTTCAGAATTGTGCCG AACGAAATTGGGGTTAATCTTCTGAAAATGCTGTCTTCCAAAATCCAGATCGATTAAGGGAAACAATGCT TTGTTCCTTTTGAGTTTGGCAGTTGGAATTAACACCTATTGCTCATAAATCATTAATTAAAAAATACCAG CAGATGATCACTACCGGTAGAAATATATTTTAAAAGCATTAACTCATCTTACAGTAGCTCATACTTAATT TAAAAAAAATTGAATTAACCAGGCAATATTTGTTTTAAAAAAGATATAACGAGAAACATCTTTTTCTTTC TTTTTTGTTGTGTGGTGCTGCCTTGCGTCTTGCCTTGTGTATATAGGTGTGTATATATTGCCCCTTGCAT TAGACCGATGCTAGACATTTCTCAAAATATGCTCATTCTCACAATGGTGGCAACATGTGTGCTGTCCCAT TAACGAAAAAACAATTAATATGTCGATTAAACAGTGCTACTTTTTTTTATGATTTGGCAAACTTGATTTA ATGATTAGATTTTTTTTTAAGATTTGAATTTACATTTGTATGTTGGTAGTTGTAGATTAGATGATGTTTC TTAACACTGTACTCTTATACCCTTTTTTTTTTCTCCGAGAGAGTTATGTTCAGATGAGCTTTTAATCTTA TATTTTTAAGATGTAACAGGGACAATGACGGGAAAAATTATGAAACGTTTAGAAGTATTGAACAATTGTA TCCCCACGCACCTGTCAAGTAACAAAATTGAACTTATTACGAAATTGCTGATCACAAATGTCTGGTTAGC TCAAAAAATTATTGTTACATGTACCATCATTGACATAACTTGATAAAAGTTCATGTAAAACCTGTAGAAG TTCAAAAAAAATCTATCAAAATTGAAAAGGGGGTGGCTAGTGCGTAATGTGTTCGCCTCTCACCACTGTG TCCCGGGTTCGAATCTCGGCTAGGGACCACATGTGAGTAGAGTTGTACGCTGGTTCTCTCCTGTGCCATG AGTGCTTTTCTCCGGACTCTCCAATTTTCCTCCTGCAAAAAGCAACACTTTTAATCCAGCTGTTCTCCGT GGTCATATATGAGTGGTATGTCACAAAAAGTACATTGTCCCTGTCGTCATTGTACAAATTAAATAATTTT GTGCATTTTTTATTTAATATTCATGCTATTTGTATTCGCTTTTAATTTTAAGTTGTATCGGTTGAAGTAA GCATAGCGTAGCAGAGCCTGTTATTTAACGTTGTCTTAAATATTTTCAATTTGTATGCATATATTTGTTC AAGAAAAAGGTACATGTATTTCTTAATTAATGCAAGACGCACCAACATTTCTTTCCTAATTCTTTCCTGT GTAAGCCGTACTGAACTTAAAATTTTTAAAAGGAATTTTATTGATCGAGATTTTGTTTTCCTGTGGAATT TGTTATTTGAGCTCCTTTTATTTTTTAACGAGTTTGGAGAATTGGTTTCTTATCTATATACAGTTGGAAT TTTCCACTAATATTTAATACGTTGGGTTATGTGTGTATATTATATGAGTGTTACAAGTTTCTTCCATCTC ATTTCTGTAGGATATACAATAATGTGTGTATTTTAGCTCTTAGTTCTGATATTACTAAGAAAAAAAGAGA CAAGATTTATGGATAATTTTTTTGTTCCTGTTGAAGGAAACAAGGCTATGGGATATATGTATAAATAGGT AGTGTTAGTGGCTTTTTTTCTTCAAAGATGATAAAGTGTTTTCAGTGATAATGTTGCCATTTTTCGGATG TAACTTAAAGTTGATGGTTCTCATGACAAGGTTTGACGTCTTGGATTTTATTACCTACGTTAGAATCGTT AGCATGCATTGTTCAATTCAGTAGCCAGAGATTTTCCCAAGTGTTGGAATATTTTGTGATATAAAAAATT GGAAATTTTGCTTTTCATAATGAGGATGGATGATGGTGTAACATATCTTATTATGAGAACAGAATTTAAA GTGGCACTCATGTGCTAGAACATGTGTATGTTACTAATAGATAATTATGTGCACATATACTGTGGCGCTT CTGTTTTAGGAATTGCTACAGTTTTCAGTCAGGATTTAGAAGGACCTATCTTTGTCTGTTTTGCCTGTTC ATTGGAAAAAAATTCTTTAAGACGAACATGCAAAAGAATTATTCTTCACTTGCAGAAGAGTAGGTTTATC TAACATTTGTTGTTAGTCCAGACCTTTGCCTTTTCAAGGAATCCAAATTATCAATATTAAGTTGCTCAAT ACTTTAATGTACTGGTGGTAGGAAGATTTCAACCCTTGATGTAACTTTTTAAATTGTGTTATTAGTCCTT GATAAAATCTCCGCATTCGTTTGGTATGGTTTCACTTAATTCATCAGGACCCAATCGAAAAGAACCTCTA TACAAGCATGTAATGTGCAGACGTCAAACACTGATTATACCGCCTAAAGCATCATTGTTGTCATTTTTTT TTATTAAACCTCCCCTTTCCCAATTCATTTAGTTTGAATTGGTAAACATGAATCATAATTGGTTCTAAAC TGCCTTTTTAATTTCCTTATTGGACTGTATTTCCTTTAAAATGCCTGCCATATCTTGAAGTTGTTTACAG GGTTTAAGCAGGTCGACCCATATTTTGTTATTTTCTAATTTTTTTTGCTGATGGAATTTCTGCTTGTATT TTCTTTCTATGGATGTTGTACTGCGATGTAATAATTTGCACCATATTTGATTCCGAGTTAATTTAGATGT AGTGGAGACTTAAATAGAGCATTTGCATCTTGCAATATTGGTTTGACATCATGTAATTGCCAGCTTTTTG CCACTAATTTGCCAATAATGGGATCAGGTTGAAATACAGAGTTTCTTAATAACAACAATCAAGTGAACAT TTGTAATTCGTACAAATTCTCAAATAGATGTAGTTTTGTGTCATGTAGTTCATCCAAGTAATTTTAGTAA ATTTCAACAATAAAAGTTTACCGTATGTACATTTAGTAAGAACGTTTGATAAAAGAATGTTGTTAATATT TTTCTGTAACTAATTAAACGTAGCGTTTATGTGAGACACATAAATGGTATGTGTTTGTATTCTTACAAAA ACAAGTCAACCCAACCGTAGAATTGGGGATGGAAAAAAAACACCCCTACTTCCAGATAGTCTGTCTTGAA ACAGTGATTGTATCTTAATGTTTTGGGATGTACTATTTGTGTTCAGTAGGCGTTTAGAGGGGTGTTTTTT TTCTCTTTTCTCCGGAAGAGTTCAAGTAGTTCTACTGCCGTGTGTTATAAGCAGGGTATATATGCTGTTC ATAATTATATTATAGCCAACACAATGATGGAAATAATTATTCATGATTGTTAGTACATTGTTATGCAAAA CGAATCATGCTACGAATTGGGAGTTATATTATGCCGTAAGGACAGTTCTGAACGGCCATGTTTTTAACAC AATATTTGGAGTATAATGTCTTGCCATGTGCATATTATTGAAGGATTGCGGTGTTACTATATATATTTTG TTGCGTCACTAATAACTTTGCACTTATGGGAAGTTTTTTACTGGTTTGTAAGTCAAATTCTCTAAAAGTA CACGTATTACTATTTTTCGCATGGACGTTTACAGGTGTATTACTGGTTAATATGAATAGTTTGGACTATT TTCACATGTTGAATTATTCGTTAGGTATTTTGTGACGGTCAAATGTGGTAGAATTGTAATACAAGAGTTT TTCATGCTCTAAAGGATAATCGTGAGCATTTTTAGAATTCTGAAGGTAATTAGGTCTTCCAAAACAAGCT ACCGGTAATGATGTTGCACTTGTCAGAAGAAAATTGCATTGTATCGTATGTCATGTACTCGAAAAACAAA TACTGTACATGGTCACACGGTTCTCTGTACGTTCCACGCATTTTAGTATAGAGCATTGCTGTATTGAATC CATTTAACAGAATCTGAATGTCGCATTACTTCTACTACTAGCACAGTAAATAATCGCCTAGGTGACAGTT TAATTGAACTGCTCACGAGTTGGGAAATATCTCTTTACATCAAGACGAGAAACATTACATAAATTTTGCC AGGCCAAATTTATGAACTTGGTGACTGATGCCCGCCAACGGTTGTTCAGTGCATGCGAGGTACATGTACA TGTAGTTATTGATAATAATATCGTGTAGGGTGTATATAACTGTGTGCTACCAAACTGTTAATCATATCCT ACCAATGATGTGCTGTATCCGTATGTAATGATATGTCATTAAATACATTGTGTATATGAAGCCGAGCTGT AGGGAACCATGCGAATTATCCAATAAAGTTGAAAGCTTCGCCTTAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds