Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038202727.1 PREDICTED: Patiria miniata protein bicaudal C homolog 1-B-like (LOC119729938), transcript variant X2, mRNA TTTATCCTGAGGTGCCCGAAGTGAACAAGTCATCAGTGTCAGTCGCTCTTCCATTCTTAATGCCCATTAT CAATTTTCCAGTCTTTACCACAGGCCTCCAAATCCTGTCCTATTGTTAGGCTGACAACAACCCTGCGCCA GAGCCTGCTTTTTATATTTCCTGCAGTTCACTTACCTGCTCACCAAACAAACTCCCCTAAAAAAGAATCG GCCTCTAACCACAAAAAAAAGTCAGGATGAATGGAGACAGTAAGCGCTGATTTAATACCACGACCAGGGC GCACAAAAGCAAGGAGTCAACGCTTGGTGAATTCAGTGCGCAGTGAATGGCGGTAGCTAGAGGAACGCAT GTGTGTGTGCTGAACACTTCTTGTGTGGTTTGGGGATCGGAACTTTGGTACTGTTTGCTGTTTGTGTACA TGTACTCTTTTATGCACACAGTGGTGTTTAGCTAGTACGACAGAAGGAAATCTTTGTCAACGAATGGACA TGTCTGTGTTGTGTTACAATGTTTGGACTTGAGAAACTTGTAGTTGAGGAATCTGCTGTTTTTGAAACTT TCTGATGACTTTGTAAAGTTAAATGAACTTGTGCATATGCTGTCTGCATGCATGTATTTGTTCAGATCAT CTGTCAGCATACGTTGAAGCACCGCCACAGATTATTAACACTGGAGAGGATCTCTGTCCACATTTGGAAT CTTCAGCAGACATCACTTGCAATGGTTGGAAAACACATAGTCAAACTTTTCTCTGAGTCTATCAACGAGC TGTGCTGCCTTGATGGAATAAAGTATTAGAGACAAAACCTGTCTGAAATATGTGTCAGCCAGTAATAAGG ATGCCACTATGTGAGAGTGAAGATCCCCACATCAAAGTGACAGGAAGAATCGAGAACATAGCAGCAGCCA AAGATAAAATCATGTCAGTTCTAGATACAAAAAGCAATAGAGTCACCTTAAAAATGGACGTCTCCTACAC GGAGCACTCACACGTGATCGGCAAAGGAGGAAACATCATCAAGAAGGTCATGCACGACACAGGCTGCCAC ATCCACTTCCCTGATTCCAACCGGGGCTCTCAACAAGAGAAGAGTAACCAGGTCTCCATAGCTGGACAGA TTGGCGGAGTGGAGCAGGCTCGGGCTAAAGTTAGGGAGCTTCTCCCGCTGGTCTTGGTCTTTGAGCTTCC CATCAGCAACAACCCAGCTCCAGACATCAACTCACCCACCATCCAACAGATCGTCCAGCTCTACAACGTT GGGGTGAATATGAAGCAGCGTGCTCGGGGCTACTCCACCACGGTCACTGTCAGGGGGTCTAGCAGCAATG CCGCGGGGGTGAAGGAAGGCACGCTACGCTTGATGGAGCACCTCGTTGGGAACTTAGGGGTAACTTGTCC CGTGAGTACGCAGATAGAGATTGCACCACAGCATCACCAGTTCATGAGCGGCCGTGGAGGTCTGAACATC AAACAGATCATGCAGGGTACCGGTGCAACCATCCACTTCCCTGACCCTAACAGTGCACAGCGCAAGAGCA CCGTCTTCATCTCGGGACCGGTGGACTCCGTCATCGTAGCTAGGCAACTACTCATGGGATGTCTCCCCCT AGTTCTGATGTTTGATGTCAAGGATGAGGTGGAGGTAGATACCACTAAACTAGCTCAGTTGATGGAGCAA CTTGATGTGTTCATCAGTGTCAAACCTAAGCCTAGGCAACCCAGCAAGTCTGTCATAGTGAAGAGTATCG AGAGGAATGCACCCAGCATGTACCGAGCCAGGCAGGCGTTACTGGGCCAGGAATGCGAGAGTTGTGCAGC TAGTTGTACCAGCACCAGCGTGCGGGGATTGAATGGTACGTCGCTGCCTCTGTCTGGGGTCAACGTGGCA AACCTCAGTCTCCTCAACTCCAACCTCATCAATGTCAACACCACCAGTCTTCTGTCTGTGAACGGTCTGC CTGTCTCTAGGGTCAGTCCTCGGTCGTCCATCAGCGGTCCCAGCGGCCTCTCCTGGCCTGCTGTATCCCA GCAGTCAACTGCACTCACTCACAGAGTGACTCCCGTCCTTTTAGTACAGCAGGGTCACAGCGCCCTCCAG GGTCAAAACACTCTCCAGGGTCACAGGGCCCTCCAGAGTCAGAAATCTCTCCAGGATCACAGTGCCCTCC TGAGTCAGAACACTCTCCAGAGTCACAGCGCCCTCCAGAGTCAGAACACTGTCCAGTCTGTCTCTAACCA AGTCCAGAACCCAACTCCTGTTCCAGCCCGGAACCTTGTTTCCAACCCCACCCAGGCCCCTGTTCCAAAT CCTACGCTGAACCCCAATATGAGCCCCCCTCTTCACCCTGCCCCCAACCCTCGTCTCGCCCCGACAGCCT CCCCTACCTCATCCCCTTCCCATGCAAATCCACTGTCAGCCCCTGTCCAACGATCCCAAACCGTGGCCAC CAATCTTCAGGTTGCAATGCGTCCAGCAGCTGAGTCGACGCGAGCCTACATGTTACCAACGGCTGGCGCA CAAGCAATAAACACTGTGATGAACACCCTGCCACAAGGGGTCCCGCACAGGGTAATACTCCCATCAGCAT TGAGTGCAAACCCACAACCAGAAGCCCTAAAGGCATCACCACAAAACACCATTATGGCAGAACAGCTGGT ATTCATGCCCAAACCCAACATATCACAACCTGAGCCACACAGGGTGATACACCCTATCCCGCACCAGCCA GAGACACAGAGGGTGATACACAGCCCCCCACAGAGAGGAGTACACCCGACGTCACCACCCCCCGGATTGA CCAAGGCAGATCCCATCCTGCTCTCAACGGAGCTGCAGAGGTTAGACATGGCAGCCAAGGCAGCGAGGCT GATCAGCTGCTGCGGAGGTGAAGAGTTGACTGAACACATTGCACGAGCCTCTCAGATTGATAGACACCTG TCGACCCACACCAAAGACAGAGTGATGAGCAGTAACCATAGCAACACAAGTAGCAGCACCAGCCCCGCCC AGAGCCCTTGCAACAGCCCCATTGACCTCATCACCATGCCGATGACCTCTCCCATCAACGCTTTGCAAGG AAGCAGCAGTAGTATTAGCAGCAGCGGCAGTAGCATCAGCAGCAACAACAACAACAATCCTAAGCTGGTG GATCTAGGCTACCTGCAGAGCAACGTCTCACCTAGCAACAGCAATGGCAACTTGTCTGGGGTGCTGATGG GGTCAGGGGGTAGGGGGTCGTTGACCTTGTTGCCAGATGGAACCCTGGGATTGACGGGATCGGGACTCGC ATATCATGCCAACAGCAGGAGGTCGTCAGAGTCGGGCGGTGACTCGGACAGTTCCGACAAGCGAGCCCCT GGGTGCGAGCGACGGGACTGGGAGCGTGAGCGAGGGGAGTGGGAGAGGGGGCGAGAGCAGGAACGACAGG AGGAACTGGACAGGCTGGCCCTGCAGTCCACATCAACGTCTTATAATGGCGTGGATTATGATCAGAAGAA ACTAATGGCAAATAAAGCCATGAAGAAGAAACCAATCGTGAGTGAAGTCCGGAGGCCCACCGATCAGTGG AGTGGTTTAGGGTTCTCCAAGTCCATGCCAGAATCTGCGATTAGAGAACAACGCAAACCTAACGGATTCT CACTGTTCCATACAGAAAAGCTGCCCACTACTTACGAGAATGCTTTGAAAGAAGAAAGCGAGAGTAACAC CAATGAGAGCAGCTGGCCACCGGATCGTTCGAGTCCGTTAGATGATTTGATGACATCACAGACGTCGGAA CAGCAACAGACGTCAGCTGCACCCGGGGAATACCCGGCGAACAGGAAAAAGAAAGTCACCTACACTAATC TGAGTTGCAGTAACTACATCGAGGGTTCTTCCTTGCCCAGACAATCTAAAGGTCTGTGGTCCAGCAATGA GTGCAGTAGTAACTCCCAGTCTCCTGCTAGTATTAAACCAGACCTAGGCGATCTCTTCATCAATCTAGGC CTGGGCAAATACGCTGACGTCTTTCAACAGCAAGAGATTGACCTTTCAACTTTCCTGACCCTGACTGACA ATGACCTGAAGGAGCTGGGGATTACGACCTTCGGTGCTAGACGGAAGATGCGTCTGGCCATCTCAGACAT GAACAAGAGTAAGACCACACCCTTCCTCTTCAATGCTACCAATACCTCTGGTCTCCTTCACGAGGGCTCC AACGGATCCAACGGCCTGATCCACTCCACCCACGGTCACGAAAGCCCGACCAGCGTCTGGTAAACCACAC AAAATACACTTACCACCACACCAAATCACAGGTACCATTGTGTAAGTAAAGTAATGGCTTCGCAAGCCTT TGCATTAACAGCACTGCCGGGTTTTAAATCAATTCTGATTCCATCCAGATAACTTTCTGTTCAGAATACA GCAAAAAGGTTGTCGTGAAGTACAAATATACACCCTTTACATGTAGGTTTTATGAGGCAAATTTTGCCAC CGTGAATGGGTTTGACTTGATACCATAGAAAGCGACAAAACAGCATGAATTAGTCGTAGTTTTGCAACAG ACTCCGTGCACAAGTACCCCCTCACTCTGCCACATAGAGAGAGTTGGAGGGGCCACTGGGAGGGTTTCTT GAACGCATTGGCGCTGTACGCCTGGGGCTCGCACTAGACGATACGAGTTTGTGTACATAAATCGTGCGTA CTTTGCCCCCTACATGCACGCACCACGGAGCTTCTACAAGTGTCAACATCAGTGTTTTTAAAGAGCACTC CGTCAGCTCAAAAAAGCTTGCGTACATGACAAATCATGATCACATCAACAATTGACCCTCGGTATCAAAA AAAAAGTTTGTAAATTCTGTATATTTCAAATAGTTTTCACAATACCAGACAACTTCGTTGATACAGTTTT GTAGGGTTTGTAGAGGAATAAATGAATAAATGTCGAGGTCATTTTACTTTGACCTGTACTGTGTTGGGTC ATTTCGGGGTCATGTTGGGGTCAAGTTGAGGTCAAGTTGAGGTCATTGATGAAGGATGTTCATGCAGAAA AAAATCAAAGTTTGAAATTCCATCAATATTGATTTGCACAAAACAATATCATTCCAAAACAATACAGTCC TGATGCGTCAGTTTTGTTGAAAAAATTGTTTACAAAAGCAGCTTTTTGTGAGAGTTTATGTTAGAAAATT TCAACATTTGACTGATCGATTCTTGTCGACCCTCATTTGCAAGCAAAGGTCCGAAATTGGAGTGGGCGAC ATTTAAACTATCAGACAATTTAAAAAAGTAAAGAAATTTACTTGACAAGGGTATTGGAATTATATTGGAA GGGGAATTTCCTTGACGAAATTGTTATTAATTTTTAATGTTAATTTTTCGTTTATATTTTTATTATTATT CTTGTGGGGGGGGGGTGGAGCAGGGTTCATTTATTGCATCTGGTTTTCAACCATTAATTCCTTTGTTTGT TTGCACATGACAATGGTCACTGTAAAAATGGCCGCCGCTTACTTTTTGCAACAGGAACGGCAAAACAGAC TGCTCCTTAAATACACCACGTGTCTTTCAAATTAGATGGGGATGATTTGAATGAATGAATGAATGAATCA TCGACAGTTGCTTGTTTGCAGAATGAAAATTTAAAACAAAAATGTGATTATGTCACATTTACGAGACAAA TAGTGCAGAGCAAATGCCTCCATTGTGGAAAATATATGCAACACTATTGACCTTATTTTGAAACAAAAGT AGACATTTAAGAAGACTTTGAAATACTTGCAGCAGTTTAAGAATGTTCGAATAGTCTCAGACTATTGTAC TTCACTGAACACTTTTTTAATTAAAAAATAATATATTTTCAGCTGAAGCTAAAGTCATATATTTTTGAAA CAGCATGCATTTTGTAGAACTATTTTTCACCAACGTAAACCATTTTGCCTTATTAAAGTGTTGAAACAGA AGTGCTTCCGAATATTAAAATAAAAAAATCATTTTTAGAAAACATGCAATTCATGTCCATTTCCATGAAC ACCGATTTTTCATCACTTACAGAAGTAGTGTATGAATCGAACCAAACTTTGAAAAGATTGCCTTGGGTTT GTTCTTGCAGACGGTGACTTTTCACTTTTTGATTGAGTTGACTTACAAATACTTGGAAAACATTTTTTAT AGAGGGGACAAACATTTAAGAAGACTATTTGAGTAGCATCAACATGCATCACATTTTTTTAGTAACTCCA TATTTAAATTTAAATATTCAAAGCCCAACTCGGAAAACCATTCCCCCTGCTTTAAAACTGGGAAGTTCTT AGTGTTACAGTTGAAGCAGAGTATGTATTTTATTTATGGAAATGTAATTATTCATAGGAGATATAAAAAA ATGCCTAGCACTGATGTATTATGGGACATACTTGTAAAAGGTGAATATAGTCTTGAAATTAGTTCAAGTC CGTTCTCCGTCCTCTGTACACATTCTTTGTACACCCTTGTCAATGTGTCGTCCACACTCAGTAGAATTAG TTAGTAAATACACAGAAATTCCTGTTTATATCTGAAATTGTAGAAAAGAATTTCTACAGAAAAGTTTCAG GCGCTTCCATACTGTAAATGAAATGCCGTTTTCTCTGCAGGATGCAGAGTAAAACAGTTTTATAAGTAAA CATTTATGAAATATTCTTTAAAAATAGATGGAACCGTGGCACAATTTTTGAATAATTTACCCAAATCCTT CAATTTTAATAGGATTTTTCATGCACCCTAAGGGGACTAAGGAAAAAGTGGAATAAAATATGGGAAAAAC CCAAGGGCAAGACAGCAGTTTTAGCTATTTTGTGTTAGTAAAAGTGCATGGAATGGACCTAAAACGCGGC AACGGCAACGCGGCTCTACAGTACGAATTAAACATGTGTGTAGATTTTGGACAGCGGCCCGGTGTCGAAT GATGCTAGCACCCCAAGTTTGTTTTTAGTTTTCACGGCTGGCCGTGGTCCAGACAATATCGTCCCCCCCC CCCC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds